mRNA_P-wetherbeei_contig11841.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11841.2.1
Unique NamemRNA_P-wetherbeei_contig11841.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11841.2.1 vs. uniprot
Match: A0A7S4D8M6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8M6_HETAK)

HSP 1 Score: 169 bits (428), Expect = 3.260e-50
Identity = 89/149 (59.73%), Postives = 112/149 (75.17%), Query Frame = 1
Query:    7 IPPVFKKLTSYIRRAEELDRDTTRGECRLVAYYCRTFAMEQGIKM--ADQSPAGKQFLLQLMDQLENEKKAISGFTEEEGKMVVTSFANDVFSRADDEDRAGLADKGTASSFFAAATFYDILEQFPGGIPEETVQKRKYARWKTAQILK 447
            IPPV K +TSYIRRAEELDRDT+R E  LVAY+CR++AME GI +  A +      FL  L+ QLE  KK +  FT+EEG+ ++T FA+ VF+RAD+EDRAGLADKGTA +F+AAA FYD L QF G +  E +QK+KYA+WK A+ILK
Sbjct:    4 IPPVLKPITSYIRRAEELDRDTSRPESVLVAYFCRSYAMELGIPLVQASRDQGATAFLNALIQQLEAAKKGLPAFTQEEGQTLMTEFAHAVFARADEEDRAGLADKGTARTFYAAANFYDALAQF-GDLAPEPLQKKKYAKWKAAEILK 151          
BLAST of mRNA_P-wetherbeei_contig11841.2.1 vs. uniprot
Match: A0A0W8AZU1_PHYNI (Vacuolar protein sorting-associated protein VTA1 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8AZU1_PHYNI)

HSP 1 Score: 169 bits (428), Expect = 9.670e-50
Identity = 86/149 (57.72%), Postives = 112/149 (75.17%), Query Frame = 1
Query:    7 IPPVFKKLTSYIRRAEELDRDTTRGECRLVAYYCRTFAMEQGIKMA--DQSPAGKQFLLQLMDQLENEKKAISGFTEEEGKMVVTSFANDVFSRADDEDRAGLADKGTASSFFAAATFYDILEQFPGGIPEETVQKRKYARWKTAQILK 447
            +PP FK L  +IRRAEELDRDT+R E +L+AY+CR +AME GIK+   D S     +LL LMD+LE+EK  +  FT+EEGK +   FA ++FS+ADDEDRAGLA+KGTA +F+AA TF+DIL QF G I E+ V+KR+Y ++K A ILK
Sbjct:    9 VPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDASNEATDYLLSLMDRLEDEKNKLPDFTQEEGKEICEDFAMEIFSKADDEDRAGLANKGTARTFYAAGTFFDILNQF-GDISEDVVEKRRYCKYKAATILK 156          
BLAST of mRNA_P-wetherbeei_contig11841.2.1 vs. uniprot
Match: A0A8J5JH99_9STRA (Vta1 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JH99_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.260e-49
Identity = 83/149 (55.70%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    7 IPPVFKKLTSYIRRAEELDRDTTRGECRLVAYYCRTFAMEQGIKMA--DQSPAGKQFLLQLMDQLENEKKAISGFTEEEGKMVVTSFANDVFSRADDEDRAGLADKGTASSFFAAATFYDILEQFPGGIPEETVQKRKYARWKTAQILK 447
            +PP FK L  +IRRAEELDRDT+R E +L+AY+CR +AME GIK+   D S     +LL LMD+LE+EK  +  FT+EEGK +   FA ++FS+ADDEDRAG+A+K TA +F+AA TF+DIL QF G I E+  +KR+Y ++K A ILK
Sbjct:    7 VPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMEMGIKLRENDASNESTDYLLSLMDRLEDEKNKLPDFTQEEGKEICEDFALEIFSKADDEDRAGMANKSTARTFYAAGTFFDILSQF-GDISEDVAEKRRYCKYKAATILK 154          
BLAST of mRNA_P-wetherbeei_contig11841.2.1 vs. uniprot
Match: A0A0P1AG58_PLAHL (Hydroxyproline-rich glycoprotein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AG58_PLAHL)

HSP 1 Score: 172 bits (435), Expect = 4.180e-49
Identity = 88/149 (59.06%), Postives = 113/149 (75.84%), Query Frame = 1
Query:    7 IPPVFKKLTSYIRRAEELDRDTTRGECRLVAYYCRTFAMEQGIKMA--DQSPAGKQFLLQLMDQLENEKKAISGFTEEEGKMVVTSFANDVFSRADDEDRAGLADKGTASSFFAAATFYDILEQFPGGIPEETVQKRKYARWKTAQILK 447
            IPP FK L  +IRRAEELDRDT+R E +L+AY+CR +AME GIK+   D S     +LL LMD+LENEKK++  FT+EEGK +   FA ++FS+ADDEDRAG A+K TA +F+AA TF+DIL QF G IPE+ V+KR+Y ++K A ILK
Sbjct:   12 IPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDVSNESTDYLLSLMDRLENEKKSLPEFTQEEGKEICEDFATEIFSKADDEDRAGKANKSTARTFYAAGTFFDILTQF-GDIPEDIVEKRRYCKYKAATILK 159          
BLAST of mRNA_P-wetherbeei_contig11841.2.1 vs. uniprot
Match: W2LDM5_PHYPR (Vta1 domain-containing protein n=20 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LDM5_PHYPR)

HSP 1 Score: 169 bits (428), Expect = 1.870e-48
Identity = 86/149 (57.72%), Postives = 112/149 (75.17%), Query Frame = 1
Query:    7 IPPVFKKLTSYIRRAEELDRDTTRGECRLVAYYCRTFAMEQGIKMA--DQSPAGKQFLLQLMDQLENEKKAISGFTEEEGKMVVTSFANDVFSRADDEDRAGLADKGTASSFFAAATFYDILEQFPGGIPEETVQKRKYARWKTAQILK 447
            +PP FK L  +IRRAEELDRDT+R E +L+AY+CR +AME GIK+   D S     +LL LMD+LE+EK  +  FT+EEGK +   FA ++FS+ADDEDRAGLA+KGTA +F+AA TF+DIL QF G I E+ V+KR+Y ++K A ILK
Sbjct:    9 VPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDASNEATDYLLSLMDRLEDEKNKLPDFTQEEGKEICEDFAMEIFSKADDEDRAGLANKGTARTFYAAGTFFDILNQF-GDISEDVVEKRRYCKYKAATILK 156          
BLAST of mRNA_P-wetherbeei_contig11841.2.1 vs. uniprot
Match: A0A3R7IJD0_9STRA (Vta1 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IJD0_9STRA)

HSP 1 Score: 162 bits (411), Expect = 2.650e-48
Identity = 82/149 (55.03%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    7 IPPVFKKLTSYIRRAEELDRDTTRGECRLVAYYCRTFAMEQGIKMA--DQSPAGKQFLLQLMDQLENEKKAISGFTEEEGKMVVTSFANDVFSRADDEDRAGLADKGTASSFFAAATFYDILEQFPGGIPEETVQKRKYARWKTAQILK 447
            +PP FK L  ++RRAEELDRDT+R E +L+AY+CR +AME GIK+   D S     +LL LMD+LE+EK  +  FT+EEGK +   FA ++FS+ADDEDRAG+A K TA +F+AA TF+DIL QF G I ++ V+KR+Y ++K A ILK
Sbjct:    9 VPPTFKALLPFVRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDASNDTTDYLLSLMDRLEDEKNKLPDFTQEEGKEICEDFAMEIFSKADDEDRAGMASKSTARTFYAAGTFFDILNQF-GDISDDIVEKRRYCKYKAATILK 156          
BLAST of mRNA_P-wetherbeei_contig11841.2.1 vs. uniprot
Match: H3HDB6_PHYRM (Vta1 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HDB6_PHYRM)

HSP 1 Score: 162 bits (411), Expect = 7.380e-48
Identity = 81/149 (54.36%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    7 IPPVFKKLTSYIRRAEELDRDTTRGECRLVAYYCRTFAMEQGIKMA--DQSPAGKQFLLQLMDQLENEKKAISGFTEEEGKMVVTSFANDVFSRADDEDRAGLADKGTASSFFAAATFYDILEQFPGGIPEETVQKRKYARWKTAQILK 447
            +PP FK L  ++RRAEELDRDT+R E +L+AY+CR +AME GIK+   D S     +LL LMD+LE EK  +  FT+EEGK +   FA ++FS+ADDEDRAG+A+K TA +F+AA TF+DIL QF G I ++  +KR+Y ++K A ILK
Sbjct:    9 VPPAFKPLLPFVRRAEELDRDTSRPESKLIAYFCRQYAMEMGIKLRENDASNEATDYLLSLMDRLETEKNNLPDFTQEEGKEICEDFAIEIFSKADDEDRAGMANKSTARTFYAAGTFFDILNQF-GDISDDVAEKRRYCKYKAATILK 156          
BLAST of mRNA_P-wetherbeei_contig11841.2.1 vs. uniprot
Match: G4YHA5_PHYSP (Vta1 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YHA5_PHYSP)

HSP 1 Score: 164 bits (416), Expect = 4.540e-47
Identity = 82/149 (55.03%), Postives = 111/149 (74.50%), Query Frame = 1
Query:    7 IPPVFKKLTSYIRRAEELDRDTTRGECRLVAYYCRTFAMEQGIKMA--DQSPAGKQFLLQLMDQLENEKKAISGFTEEEGKMVVTSFANDVFSRADDEDRAGLADKGTASSFFAAATFYDILEQFPGGIPEETVQKRKYARWKTAQILK 447
            +PP FK L  +IRRAEELDRDT+R E +L+AY+CR +AME GIK+   D S     +LL LMD+LE+EK  +  FT+EEGK +   FA ++F++ADDEDRAG+A+K TA +F+AA TF+DIL QF G + E+ V+KR+Y ++K A ILK
Sbjct:    9 VPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDASNEATDYLLSLMDRLEDEKNKLPDFTQEEGKEICEDFAMEIFTKADDEDRAGMANKSTARTFYAAGTFFDILNQF-GDVSEDVVEKRRYCKYKAATILK 156          
BLAST of mRNA_P-wetherbeei_contig11841.2.1 vs. uniprot
Match: A0A329T423_9STRA (Vta1 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T423_9STRA)

HSP 1 Score: 165 bits (417), Expect = 4.700e-47
Identity = 83/149 (55.70%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    7 IPPVFKKLTSYIRRAEELDRDTTRGECRLVAYYCRTFAMEQGIKMA--DQSPAGKQFLLQLMDQLENEKKAISGFTEEEGKMVVTSFANDVFSRADDEDRAGLADKGTASSFFAAATFYDILEQFPGGIPEETVQKRKYARWKTAQILK 447
            +PP FK L  +IRRAEELDRDT+R E +L+AY+CR +AME GIK+   D S     +LL LMD+LE+EK  +  FT+EEGK +   FA ++FS+ADDEDRAG+A+K TA +F+AA TF+DIL QF G I E+  +KR+Y ++K A ILK
Sbjct:    7 VPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMEMGIKLRENDASNESTDYLLSLMDRLEDEKNKLPDFTQEEGKEICEDFALEIFSKADDEDRAGMANKSTARTFYAAGTFFDILSQF-GDISEDVAEKRRYCKYKAATILK 154          
BLAST of mRNA_P-wetherbeei_contig11841.2.1 vs. uniprot
Match: D0MXZ0_PHYIT (Vacuolar protein sorting-associated protein VTA1 n=3 Tax=Phytophthora TaxID=4783 RepID=D0MXZ0_PHYIT)

HSP 1 Score: 164 bits (415), Expect = 7.040e-47
Identity = 83/149 (55.70%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    7 IPPVFKKLTSYIRRAEELDRDTTRGECRLVAYYCRTFAMEQGIKMA--DQSPAGKQFLLQLMDQLENEKKAISGFTEEEGKMVVTSFANDVFSRADDEDRAGLADKGTASSFFAAATFYDILEQFPGGIPEETVQKRKYARWKTAQILK 447
            +PP FK L  +IRRAEELDRDT+R E +L+AY+CR +AME GIK+   D S     +LL LMD+LE EK  +  FT+EEGK +   FA ++FS+ADDEDRAG+A K TA +F+AA TF+DIL QF G + E+ V+KR+Y ++K A ILK
Sbjct:    8 VPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDSSNEATDYLLSLMDRLEEEKNKLPDFTQEEGKEICEDFAMEIFSKADDEDRAGMATKSTARTFYAAGTFFDILSQF-GDLSEDVVEKRRYCKFKAATILK 155          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11841.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4D8M6_HETAK3.260e-5059.73Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0W8AZU1_PHYNI9.670e-5057.72Vacuolar protein sorting-associated protein VTA1 n... [more]
A0A8J5JH99_9STRA3.260e-4955.70Vta1 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A0P1AG58_PLAHL4.180e-4959.06Hydroxyproline-rich glycoprotein n=1 Tax=Plasmopar... [more]
W2LDM5_PHYPR1.870e-4857.72Vta1 domain-containing protein n=20 Tax=Phytophtho... [more]
A0A3R7IJD0_9STRA2.650e-4855.03Vta1 domain-containing protein n=3 Tax=Phytophthor... [more]
H3HDB6_PHYRM7.380e-4854.36Vta1 domain-containing protein n=1 Tax=Phytophthor... [more]
G4YHA5_PHYSP4.540e-4755.03Vta1 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A329T423_9STRA4.700e-4755.70Vta1 domain-containing protein n=1 Tax=Phytophthor... [more]
D0MXZ0_PHYIT7.040e-4755.70Vacuolar protein sorting-associated protein VTA1 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11841contigP-wetherbeei_contig11841:935..2085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4792.ETI43728
PFAMsVta1
Model size447
Max annot lvl4776|Peronosporales
KEGG koko:K12199
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.07e-49
EggNOG OGsKOG0917@1|root,KOG0917@2759|Eukaryota,3Q7C6@4776|Peronosporales
DescriptionVta1 like
Cds size447
COG categoryS
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185928.039033-CDS-P-wetherbeei_contig11841:934..10631683185928.039033-CDS-P-wetherbeei_contig11841:934..1063Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11841 935..1063 +
1683185928.0505059-CDS-P-wetherbeei_contig11841:1369..14831683185928.0505059-CDS-P-wetherbeei_contig11841:1369..1483Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11841 1370..1483 +
1683185928.061669-CDS-P-wetherbeei_contig11841:1881..20851683185928.061669-CDS-P-wetherbeei_contig11841:1881..2085Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11841 1882..2085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11841.2.1prot_P-wetherbeei_contig11841.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11841 935..2085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11841.2.1

>prot_P-wetherbeei_contig11841.2.1 ID=prot_P-wetherbeei_contig11841.2.1|Name=mRNA_P-wetherbeei_contig11841.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MVIPPVFKKLTSYIRRAEELDRDTTRGECRLVAYYCRTFAMEQGIKMADQ
SPAGKQFLLQLMDQLENEKKAISGFTEEEGKMVVTSFANDVFSRADDEDR
AGLADKGTASSFFAAATFYDILEQFPGGIPEETVQKRKYARWKTAQILK
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mRNA from alignment at P-wetherbeei_contig11841:935..2085+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11841.2.1 ID=mRNA_P-wetherbeei_contig11841.2.1|Name=mRNA_P-wetherbeei_contig11841.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1151bp|location=Sequence derived from alignment at P-wetherbeei_contig11841:935..2085+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGATCCCACCGGTTTTCAAGAAGCTCACTTCGTATATCCGCAGAGC AGAGGAGCTCGACCGCGATACGACGAGAGGAGAGTGCCGCCTCGTGGCGT ATTACTGCCGCACCTTTGCAATGGAGCAGGTGAGCGGCTGAGGAAAGGAG CGATACTTTTTAATTGTCTCCTGCAGTAGGGAGTAACATCGCGACACGGC AAGACACAAAGCAGATTTATGAAGAAGCTTCTCACTTGGCTTCTTCATAT TCTCTTTTCCGTTCTGCCGCAGGCGCCGCATGCAATAGAAAACGCTCTGT GTGTTCGTTTCTCTTTATTCTTCCCTGCTCACCCTTTGCCAAGAAATGAA AAACGCGCTTCTAGAAGTCAAAAGTAAAAGAAATCTTTGTTTCTCATTCG CCTACTCGGGCGCTCGCCGCTCGTCGTGGCTCCAGGGCATAAAAATGGCC GACCAGAGTCCCGCGGGCAAGCAATTTCTGCTGCAGCTGATGGACCAACT CGAGAACGAGAAGAAGGCAATATCGGGCTTCACCGAGGAGGAAGGGAAGG TGCGCTGTAAGGAGGCGCTACCGTTGCTGCGTATTTTGTTTTCTCTTTCT CACCTTTGCTCACCTTTCTCTCTCCCATTTTGCCTTTGCCAGTACTTTCG ATTTGTATTTGTCTCTCTCGAAGGGTTGACCGCAAGGAAAGCTAGCGCTG AAGCCGTTCGTTTCTCGCCGAGGCTTCCTGGCTGTATCCTTCTCCTCTCT TTCTCCATCTGTACCATCGCACGGCCGTCGTCGTCGCAGCAGCCGCTCTC ACTAGCGTCCTCATATCGTTGATCAACCCTGCCGCTTCCCGCCGCCGCCA CCACTGCCAGTTTGCCCGCCGCTGCCGCCTTCTCCACTGCCATCCCGATT CTATCCCCCGCCACACGCTGACGCCGCGGCCGCCCCTGCTCCCACAGATG GTCGTAACGAGCTTCGCCAACGACGTCTTCTCCCGCGCTGACGACGAAGA CCGCGCGGGCCTCGCCGACAAGGGCACGGCCAGCAGTTTCTTCGCCGCCG CAACATTTTACGACATCCTGGAGCAGTTTCCGGGTGGCATTCCGGAGGAG ACGGTGCAGAAACGGAAGTACGCGCGGTGGAAGACGGCGCAAATACTCAA G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11841:935..2085+

>mRNA_P-wetherbeei_contig11841.2.1 ID=mRNA_P-wetherbeei_contig11841.2.1|Name=mRNA_P-wetherbeei_contig11841.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig11841:935..2085+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGATCCCACCGGTTTTCAAGAAGCTCACTTCGTATATCCGCAGAGC
AGAGGAGCTCGACCGCGATACGACGAGAGGAGAGTGCCGCCTCGTGGCGT
ATTACTGCCGCACCTTTGCAATGGAGCAGGGCATAAAAATGGCCGACCAG
AGTCCCGCGGGCAAGCAATTTCTGCTGCAGCTGATGGACCAACTCGAGAA
CGAGAAGAAGGCAATATCGGGCTTCACCGAGGAGGAAGGGAAGATGGTCG
TAACGAGCTTCGCCAACGACGTCTTCTCCCGCGCTGACGACGAAGACCGC
GCGGGCCTCGCCGACAAGGGCACGGCCAGCAGTTTCTTCGCCGCCGCAAC
ATTTTACGACATCCTGGAGCAGTTTCCGGGTGGCATTCCGGAGGAGACGG
TGCAGAAACGGAAGTACGCGCGGTGGAAGACGGCGCAAATACTCAAG
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