mRNA_P-wetherbeei_contig11833.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig11833.1.1
Unique Name	mRNA_P-wetherbeei_contig11833.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig11833.1.1 vs. uniprot
Match: D8LE11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE11_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.370e-17
Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = 2

Query:  437 SKEFKFAAVRAALRKQSLTFESYSEEVVVALWRVLKARHAAGERRMLRKELQQALLNELEEPLASQRMSKNKINKIFQ 670
            S+E +FAAV+AALRKQSLTFE YSEEV+ ALW  L+ RHA G   MLRK LQ ALL  L  PL   RMSKNK+NKIFQ
Sbjct:   19 SRENRFAAVKAALRKQSLTFEPYSEEVIHALWGELQDRHAQGVYCMLRKGLQNALLVRLARPLDGGRMSKNKVNKIFQ 96

[Close]

BLAST of mRNA_P-wetherbeei_contig11833.1.1 vs. uniprot
Match: A0A836C8Z0_9STRA (C3H1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Z0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.820e-7
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 2

Query:  434 TSKEFKFAAVRAALRKQSLTFESYSEEVVVALWRVLKAR-HAAGERRMLRKELQQALLNELEEPLASQRMSKNKIN 658
            + K  KFAAVRAALRKQSLT E YSE V   LW+ ++ R  A G  ++ RK+LQ  L+  L   L    MSKNK++
Sbjct:   24 SKKAHKFAAVRAALRKQSLTHEPYSEFVATELWQCVQRRVEAYGTTKVHRKQLQSELIQALAPYLDKNEMSKNKLS 99

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig11833.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig11833.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LE11_ECTSI	1.370e-17	67.95	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A836C8Z0_9STRA	6.820e-7	50.00	C3H1-type domain-containing protein n=1 Tax=Tribon...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig11833	contig	P-wetherbeei_contig11833:230..1307 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	2880.D8LE11
Model size	671
Max annot lvl	2759\|Eukaryota
Hectar predicted targeting category	other localisation
GOs	GO:0000165,GO:0000981,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002694,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006417,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009611,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010948,GO:0014070,GO:0016070,GO:0016071,GO:0016310,GO:0017091,GO:0017145,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019827,GO:0023014,GO:0023052,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031960,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032870,GO:0033077,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034612,GO:0034641,GO:0034655,GO:0035019,GO:0035556,GO:0035925,GO:0036211,GO:0042110,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044344,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0045577,GO:0045595,GO:0045596,GO:0045598,GO:0045599,GO:0045619,GO:0045786,GO:0045930,GO:0045935,GO:0046483,GO:0046649,GO:0046700,GO:0048103,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048731,GO:0048856,GO:0048869,GO:0050779,GO:0050789,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051252,GO:0051254,GO:0051301,GO:0051384,GO:0051716,GO:0051726,GO:0060216,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0065007,GO:0065008,GO:0070371,GO:0070848,GO:0070849,GO:0070887,GO:0071310,GO:0071345,GO:0071356,GO:0071363,GO:0071364,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071495,GO:0071559,GO:0071560,GO:0071704,GO:0071774,GO:0080090,GO:0090304,GO:0097011,GO:0097012,GO:0097159,GO:0098727,GO:0140110,GO:1900151,GO:1900153,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902105,GO:1903311,GO:1903313,GO:1903506,GO:1903706,GO:2000026,GO:2000112,GO:2000113,GO:2000736,GO:2000737,GO:2001141
Exons	3
Evalue	3.49e-20
EggNOG OGs	KOG1595@1\|root,KOG1595@2759\|Eukaryota
Description	DNA binding
Cds size	288
COG category	K

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683185927.8250182-CDS-P-wetherbeei_contig11833:229..265	1683185927.8250182-CDS-P-wetherbeei_contig11833:229..265	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig11833 230..265 -
1683185927.8373039-CDS-P-wetherbeei_contig11833:560..716	1683185927.8373039-CDS-P-wetherbeei_contig11833:560..716	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig11833 561..716 -
1683185927.84703-CDS-P-wetherbeei_contig11833:829..925	1683185927.84703-CDS-P-wetherbeei_contig11833:829..925	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig11833 830..925 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683185927.8583977-UTR-P-wetherbeei_contig11833:925..1307	1683185927.8583977-UTR-P-wetherbeei_contig11833:925..1307	Phaeothamnion wetherbeei SAG_119_79	UTR	P-wetherbeei_contig11833 926..1307 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig11833.1.1	prot_P-wetherbeei_contig11833.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig11833 230..925 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig11833:230..1307-
coding sequence from alignment at P-wetherbeei_contig11833:230..1307-

protein sequence of mRNA_P-wetherbeei_contig11833.1.1

>prot_P-wetherbeei_contig11833.1.1 ID=prot_P-wetherbeei_contig11833.1.1|Name=mRNA_P-wetherbeei_contig11833.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=96bp
MSCYIRRPRQGGPPRAPTSKEFKFAAVRAALRKQSLTFESYSEEVVVALW
RVLKARHAAGERRMLRKELQQALLNELEEPLASQRMSKNKINKIFQ

mRNA from alignment at P-wetherbeei_contig11833:230..1307-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig11833.1.1 ID=mRNA_P-wetherbeei_contig11833.1.1|Name=mRNA_P-wetherbeei_contig11833.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1078bp|location=Sequence derived from alignment at P-wetherbeei_contig11833:230..1307- (Phaeothamnion wetherbeei SAG_119_79)
GTGAGGAAGGGGGCATAGGAGAGCTGAATCGTCGGACCAGCGGTTGCCCC
GCAGAGACTGCCCTCGTCGCACAGCGCTGCGGGCGCCTCTCCTCCATTCC
CATTTCAAAACTTTTTCGCTCGACGTGACAGAAGGCGAGACCGGACGGGA
ATGGGGGGCGCTAACGGACGGCCCACCTCCCTAGGCGCCCTTGTGGTGTT
GCTCGCGTCTCATCCGGCCGTAGTCGCAAGTGCTGCATCGTGTTTCTGGC
CAAGTTGCCCTTAAGCTTCGCTCAAGAGGGACGAGAGCTCGTTCAAGACC
AAGGCCTTCCTTAAAAAGGCCTTCGCGGTCTCTCCCATCCTTCAAGCTCG
CGCGGTGCGCAAGCATAGGCCGAGCGGCAGGCATGTCCTGCTACATTCGT
CGCCCAAGGCAGGGGGGACCGCCTCGCGCGCCCACCTCGAAGGAATTCAA
GTTCGCGGCTGTGCGCGCGGCACTGCGGGTAAGCTGCGGCCCTTTGCTCC
TCGAAGCCGCCCGCCACCCGGCCTGCCGCCGTGCTGACGCCTCACGTCGC
CCCGCTTTCCTCCTTCAACTTGGCCCCTTGCTCACCAACAGAAGCAGAGC
CTGACCTTCGAGTCGTACTCGGAGGAGGTGGTGGTCGCGCTGTGGCGCGT
GCTGAAGGCTCGCCATGCCGCGGGTGAGCGCCGCATGCTGCGCAAAGAAC
TGCAGCAGGCGCTCCTCAATGAACTGGAAGAACCGCTGGCATCTCAGGTG
AGTCGTATACTCTCGTGCTGCGGACGGGTCGTCATGCAGTCGACGGACGT
GACTTGCTTGCGTGTTCTTCTGACGCATCCTTCTGTTGCAGCAGCACGCG
TGTTGTCCTTTGATAGATCCTCGAGAGGTTTTTGTCGCTTGGCAAGGACA
CACGCTTTTGTAAGGGTTGCATAGAATTGATCTCCGCCACTCATCAATTA
AAAACAACTCTAATGCTCTCCGCTGCCTTGCGCTACCACCCCATTTTGTG
CCACCGCTGTCTGCGCCTGCTTCTCCCGTTCTCTCAAAACAGCGCATGAG
CAAGAACAAGATCAACAAGATATTCCAG

Coding sequence (CDS) from alignment at P-wetherbeei_contig11833:230..1307-

>mRNA_P-wetherbeei_contig11833.1.1 ID=mRNA_P-wetherbeei_contig11833.1.1|Name=mRNA_P-wetherbeei_contig11833.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig11833:230..1307- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCTGCTACATTCGTCGCCCAAGGCAGGGGGGACCGCCTCGCGCGCC
CACCTCGAAGGAATTCAAGTTCGCGGCTGTGCGCGCGGCACTGCGGAAGC
AGAGCCTGACCTTCGAGTCGTACTCGGAGGAGGTGGTGGTCGCGCTGTGG
CGCGTGCTGAAGGCTCGCCATGCCGCGGGTGAGCGCCGCATGCTGCGCAA
AGAACTGCAGCAGGCGCTCCTCAATGAACTGGAAGAACCGCTGGCATCTC
AGCGCATGAGCAAGAACAAGATCAACAAGATATTCCAG