mRNA_P-wetherbeei_contig11819.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11819.2.1
Unique NamemRNA_P-wetherbeei_contig11819.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11819.2.1 vs. uniprot
Match: D7FVP9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP9_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 6.190e-57
Identity = 88/150 (58.67%), Postives = 114/150 (76.00%), Query Frame = 1 
Query:    4 LKGVGQLTGRTMKGMVHLLQPKAVALPEILTAWKLEQQLGRPPGRVQRSAATVGFRRDGTVAVHYDGVEMLTEFKFYPRRWPRACSIEFDARAWQGPRDGAPVLKHYRGEFVRNLMDPRVITIEGVIYDVRGNALWKKRIKSGTFVAKRR 453
            +K VG+ TG++MK MVH LQPK+V L EIL  WK+EQ +G+PPGRV + AATV FRRDGTVA  +DG E +++F F    WPRAC+IEF+A+A+QGP D  PV K Y+G F R L+DP++I +EG IYDV G  +WK+R+KSG F A+RR
Sbjct:  251 MKSVGKATGKSMKAMVHALQPKSVGLGEILDTWKIEQVVGKPPGRVTKCAATVEFRRDGTVATSFDGRETVSDFTFRAHAWPRACTIEFEAKAFQGPWDEEPVWKVYKGSFSRKLLDPKIIMLEGTIYDVTGKMMWKRRVKSGKFTARRR 400
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BLAST of mRNA_P-wetherbeei_contig11819.2.1 vs. uniprot
Match: A0A4D9DH60_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DH60_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.460e-35
Identity = 65/152 (42.76%), Postives = 100/152 (65.79%), Query Frame = 1 
Query:    1 MLKGVGQLTGRTMKGMVHLLQP-KAVALPEILTAWKLEQQLGRPPGRVQRSAATVGFRRDGTVAVHYDGVEMLTEFKFYPRRWPRACSIEFDARAWQGPRDGAPVLKHYRGEFVRNLMDPRVITIEGVIYDVRGNALWKKRIKSGTFVAKRR 453
            + KG  ++T  ++  +  LLQP K V+L E+L  WK++Q++  P G V+R  AT+  R+DGTV   ++G E++T+F F  R+WPR+C IEF+ARA+QGP D  P  K Y+G   R+LM+   + +EG IYDV+G   W+++ + G F A +R
Sbjct:  167 LFKGAAKITSSSVGKVAGLLQPNKYVSLREVLGVWKVKQKITEPGGEVERCEATLEIRKDGTVVTFFEGKELVTDFLFKERQWPRSCIIEFEARAFQGPYDREPQPKFYKGYVRRSLMNAGSVRLEGKIYDVQGTFFWRQKRQVGKFRAVKR 318
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BLAST of mRNA_P-wetherbeei_contig11819.2.1 vs. uniprot
Match: A0A7S2S4V2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S4V2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.850e-16
Identity = 54/149 (36.24%), Postives = 73/149 (48.99%), Query Frame = 1 
Query:   34 TMKGMVHLLQPKAVALPEILTAWKLEQQLGRPPGRVQRSAATVGFRRDGTVAVHYDGVEMLTEFKFYPRRWPRACSIEFDARAWQGPRDGAPVLKHYRGEFVRNLMDPRVITIEGVIYDV---------RGNALWKKRIKSGTFVAKRR 453
            T K   +L  PK V+  +I+  W+L+Q            AA V     G V V Y   E  T + F  R WPR+C+I+F+ARA+QGPRD  PV   Y   F R + D  VI + G IY +         RG+   K  +  GTF A++R
Sbjct:  152 TGKAAYYLASPKHVSRQDIVGVWRLDQT-----ALSASCAANVELTMRGDVLVTYQAEEFRTPYYFSERSWPRSCTIQFEARAFQGPRDEQPVNMLYVASFRRKIADRNVIKMVGKIYQITHSKGKFPFRGSKSQKTLV--GTFTARKR 293
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BLAST of mRNA_P-wetherbeei_contig11819.2.1 vs. uniprot
Match: A0A7S4MEB1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MEB1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 9.150e-12
Identity = 34/71 (47.89%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:  208 EMLTEFKFYPRRWPRACSIEFDARAWQGPRDGAPVLKHYRGEFVRNLMDPRVITIEGVIYDVR--GNALWK 414
            E  T +KF  R WPR+C++EF+ARA+QGP D  PV  +YRG F R + D  V+ I G IY     G   WK
Sbjct:  330 EFRTPYKFRERSWPRSCTVEFEARAFQGPDDDEPVTMYYRGYFRRKIADRSVVKIVGNIYLASRGGRGFWK 400
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11819.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FVP9_ECTSI6.190e-5758.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9DH60_9STRA1.460e-3542.76Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2S4V2_9STRA1.850e-1636.24Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S4MEB1_9STRA9.150e-1247.89Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11819contigP-wetherbeei_contig11819:1364..1816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FVP9
Model size453
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.01e-57
EggNOG OGs2ETV1@1|root,2SW46@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_005950.1
Cds size453
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185927.218243-CDS-P-wetherbeei_contig11819:1363..18161683185927.218243-CDS-P-wetherbeei_contig11819:1363..1816Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11819 1364..1816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11819.2.1prot_P-wetherbeei_contig11819.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11819 1364..1816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11819.2.1

>prot_P-wetherbeei_contig11819.2.1 ID=prot_P-wetherbeei_contig11819.2.1|Name=mRNA_P-wetherbeei_contig11819.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MLKGVGQLTGRTMKGMVHLLQPKAVALPEILTAWKLEQQLGRPPGRVQRS
AATVGFRRDGTVAVHYDGVEMLTEFKFYPRRWPRACSIEFDARAWQGPRD
GAPVLKHYRGEFVRNLMDPRVITIEGVIYDVRGNALWKKRIKSGTFVAKR
R
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mRNA from alignment at P-wetherbeei_contig11819:1364..1816-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11819.2.1 ID=mRNA_P-wetherbeei_contig11819.2.1|Name=mRNA_P-wetherbeei_contig11819.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig11819:1364..1816- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCAAGGGGGTCGGGCAGCTGACGGGGCGCACGATGAAGGGCATGGT
GCACCTCCTCCAGCCCAAAGCTGTCGCGCTCCCCGAAATCCTCACTGCCT
GGAAGCTAGAGCAGCAGCTAGGGCGGCCACCGGGCCGCGTCCAGCGCAGT
GCCGCCACCGTCGGGTTCCGCCGCGACGGCACCGTCGCCGTCCACTATGA
CGGCGTCGAGATGCTGACGGAATTCAAGTTCTACCCGCGCCGGTGGCCGC
GGGCCTGCTCGATTGAGTTTGACGCCCGGGCTTGGCAGGGGCCACGGGAT
GGGGCGCCGGTGCTCAAGCACTACCGCGGGGAATTCGTGCGGAACCTGAT
GGACCCGCGCGTCATCACCATTGAGGGCGTCATCTACGACGTGCGGGGAA
ACGCGCTGTGGAAGAAGCGCATCAAGTCGGGGACCTTTGTCGCCAAGCGT
CGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11819:1364..1816-

>mRNA_P-wetherbeei_contig11819.2.1 ID=mRNA_P-wetherbeei_contig11819.2.1|Name=mRNA_P-wetherbeei_contig11819.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig11819:1364..1816- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCAAGGGGGTCGGGCAGCTGACGGGGCGCACGATGAAGGGCATGGT
GCACCTCCTCCAGCCCAAAGCTGTCGCGCTCCCCGAAATCCTCACTGCCT
GGAAGCTAGAGCAGCAGCTAGGGCGGCCACCGGGCCGCGTCCAGCGCAGT
GCCGCCACCGTCGGGTTCCGCCGCGACGGCACCGTCGCCGTCCACTATGA
CGGCGTCGAGATGCTGACGGAATTCAAGTTCTACCCGCGCCGGTGGCCGC
GGGCCTGCTCGATTGAGTTTGACGCCCGGGCTTGGCAGGGGCCACGGGAT
GGGGCGCCGGTGCTCAAGCACTACCGCGGGGAATTCGTGCGGAACCTGAT
GGACCCGCGCGTCATCACCATTGAGGGCGTCATCTACGACGTGCGGGGAA
ACGCGCTGTGGAAGAAGCGCATCAAGTCGGGGACCTTTGTCGCCAAGCGT
CGG
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