mRNA_P-wetherbeei_contig11772.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11772.1.1
Unique NamemRNA_P-wetherbeei_contig11772.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11772.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11772contigP-wetherbeei_contig11772:729..1852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size745
Hectar predicted targeting categoryother localisation
Exons3
Cds size735
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185925.6086338-UTR-P-wetherbeei_contig11772:728..7361683185925.6086338-UTR-P-wetherbeei_contig11772:728..736Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11772 729..736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185925.6190927-CDS-P-wetherbeei_contig11772:736..8141683185925.6190927-CDS-P-wetherbeei_contig11772:736..814Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11772 737..814 +
1683185925.63052-CDS-P-wetherbeei_contig11772:1021..12931683185925.63052-CDS-P-wetherbeei_contig11772:1021..1293Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11772 1022..1293 +
1683185925.6420503-CDS-P-wetherbeei_contig11772:1467..18521683185925.6420503-CDS-P-wetherbeei_contig11772:1467..1852Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11772 1468..1852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11772.1.1prot_P-wetherbeei_contig11772.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11772 737..1852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11772.1.1

>prot_P-wetherbeei_contig11772.1.1 ID=prot_P-wetherbeei_contig11772.1.1|Name=mRNA_P-wetherbeei_contig11772.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=245bp
MAAAAAAQGAQGAQGAQDAVALQRLQADLQRAAAVRDRLLWARRHDRHRV
HATGGGRPASTAAGVRLWGDGADAKVVVANACFAAWRRGLEDGRRRRRAL
RRLLHTAMRGRANYAFRRWRSQAVAATTLVQRRTTALRTVFFICGQNAGG
GSRRRADRLAAAWLVWSERASKRYLERLVESEVTVKKGEEVEFLAISSAF
RQLFGGFGFSLFGYVRRTLSCCCCIFLSFRGSKRYYAPARPFPQS
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mRNA from alignment at P-wetherbeei_contig11772:729..1852+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11772.1.1 ID=mRNA_P-wetherbeei_contig11772.1.1|Name=mRNA_P-wetherbeei_contig11772.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1124bp|location=Sequence derived from alignment at P-wetherbeei_contig11772:729..1852+ (Phaeothamnion wetherbeei SAG_119_79)
GGCTGGTCATGGCGGCGGCTGCGGCGGCGCAGGGCGCGCAGGGCGCGCAG
GGCGCGCAGGACGCGGTGGCTCTTCAGCGGCTGCAGGTAAGCACCGGCGT
TGAAAGGATGCTTCACGGATGGGGAAGACAACTTGATCTATAGAATTAGT
TTTGCGGTGCAGCGATCAGAAGATGCCGTTTCTCTCGGCGGTGCTCACGT
TCCGCGGCAGTATAACAGGGAGAGAGGGAGACTGCCCCTCGCGTGACTAA
GCCGCCTTGCTGCCGCTTCCCTCCCATCATCGTTCTTCTGAAGGCCGACT
TGCAGCGGGCAGCAGCCGTGCGAGACCGCCTGCTGTGGGCTCGACGCCAC
GACAGGCATCGTGTTCATGCGACCGGCGGTGGAAGACCAGCATCAACTGC
GGCGGGGGTCCGCTTGTGGGGCGATGGAGCCGATGCCAAAGTCGTTGTTG
CTAATGCCTGTTTCGCCGCGTGGCGGCGCGGCTTGGAAGACGGGCGGCGC
CGACGACGGGCGCTGCGTCGGTTGCTTCACACAGCAATGCGGGGTCGCGC
CAATTACGCCTTTCGGTGAGTTTACGGCCAAATTTCCGCTCATGCAATGT
CCTTTTCGCCTGTTTTCCTGTGGATTCCCGGCACTGGCGCTGTTCTCAAG
TCAATTGGACCAACTGATGTCTTCGATGGGTTTGCCTGCACACGGAACCC
GTCCAGCAGCTCCTTCCTGTTTGCCATCTGACTCATCAGGCGCTGGCGGA
GTCAAGCGGTTGCCGCGACGACGCTGGTCCAGCGGCGCACTACAGCACTA
CGGACAGTGTTCTTTATTTGCGGTCAAAACGCAGGCGGCGGCAGCAGGCG
GCGAGCAGATCGGCTGGCTGCGGCGTGGCTCGTGTGGTCAGAAAGGGCGA
GTAAGCGCTACCTTGAAAGACTGGTGGAGAGCGAAGTCACTGTGAAAAAA
GGGGAGGAGGTGGAGTTTTTGGCGATTTCCTCGGCGTTTCGACAGCTTTT
CGGTGGCTTTGGCTTTTCACTGTTTGGTTACGTCAGAAGGACGCTCAGCT
GCTGCTGCTGCATTTTTTTGTCCTTCCGCGGTTCAAAACGTTACTATGCT
CCGGCTCGTCCTTTTCCACAATCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11772:729..1852+

>mRNA_P-wetherbeei_contig11772.1.1 ID=mRNA_P-wetherbeei_contig11772.1.1|Name=mRNA_P-wetherbeei_contig11772.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=735bp|location=Sequence derived from alignment at P-wetherbeei_contig11772:729..1852+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGGCTGCGGCGGCGCAGGGCGCGCAGGGCGCGCAGGGCGCGCA
GGACGCGGTGGCTCTTCAGCGGCTGCAGGCCGACTTGCAGCGGGCAGCAG
CCGTGCGAGACCGCCTGCTGTGGGCTCGACGCCACGACAGGCATCGTGTT
CATGCGACCGGCGGTGGAAGACCAGCATCAACTGCGGCGGGGGTCCGCTT
GTGGGGCGATGGAGCCGATGCCAAAGTCGTTGTTGCTAATGCCTGTTTCG
CCGCGTGGCGGCGCGGCTTGGAAGACGGGCGGCGCCGACGACGGGCGCTG
CGTCGGTTGCTTCACACAGCAATGCGGGGTCGCGCCAATTACGCCTTTCG
GCGCTGGCGGAGTCAAGCGGTTGCCGCGACGACGCTGGTCCAGCGGCGCA
CTACAGCACTACGGACAGTGTTCTTTATTTGCGGTCAAAACGCAGGCGGC
GGCAGCAGGCGGCGAGCAGATCGGCTGGCTGCGGCGTGGCTCGTGTGGTC
AGAAAGGGCGAGTAAGCGCTACCTTGAAAGACTGGTGGAGAGCGAAGTCA
CTGTGAAAAAAGGGGAGGAGGTGGAGTTTTTGGCGATTTCCTCGGCGTTT
CGACAGCTTTTCGGTGGCTTTGGCTTTTCACTGTTTGGTTACGTCAGAAG
GACGCTCAGCTGCTGCTGCTGCATTTTTTTGTCCTTCCGCGGTTCAAAAC
GTTACTATGCTCCGGCTCGTCCTTTTCCACAATCA
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