mRNA_P-wetherbeei_contig1177.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1177.2.1
Unique NamemRNA_P-wetherbeei_contig1177.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1177.2.1 vs. uniprot
Match: A0A6H5KGP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP0_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.660e-14
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    4 KRVRTENTRFKQLAEEFMNVEGEATIDEDLMRELREMKEKMAGPGDKYANDTRKY 168
            KRV+ E+ +F    +EFMNV+GEA  D D+M+ELR+MKEKMAGPGDKYA DTR Y
Sbjct:  339 KRVKVESAKFDAEKDEFMNVDGEAEFDVDIMKELRDMKEKMAGPGDKYAKDTRAY 393
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BLAST of mRNA_P-wetherbeei_contig1177.2.1 vs. uniprot
Match: A0A835YR84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR84_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.460e-13
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    4 KRVRTENTRFKQLAEEFMNVEGEATIDEDLMRELREMKEKMAGPGDKYANDTRKY 168
            KR+R ENT+F+Q AEE M VEGE   +EDLMRELR MKE+  GPGDKYA +TR+Y
Sbjct:  102 KRIREENTKFQQNAEEHM-VEGEVAYNEDLMRELRRMKEENVGPGDKYAKETRRY 155
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BLAST of mRNA_P-wetherbeei_contig1177.2.1 vs. uniprot
Match: D8LDI5_ECTSI (MscS Mechanosensitive ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDI5_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 6.440e-13
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    4 KRVRTENTRFKQLAEEFMNVEGEATIDEDLMRELREMKEKMAGPGDKYANDTRKY 168
            KRV+ E+ +F    +EFM+V+GEA  D D+M+ELR+MKEKMAGPGD YA DTR Y
Sbjct:  172 KRVKVESAKFDAEKDEFMDVDGEAEFDVDIMKELRDMKEKMAGPGDSYAKDTRAY 226
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1177.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KGP0_9PHAE3.660e-1465.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YR84_9STRA2.460e-1367.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LDI5_ECTSI6.440e-1361.82MscS Mechanosensitive ion channel n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1177contigP-wetherbeei_contig1177:31..553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionMscS Mechanosensitive ion channel
Ec32 orthologEc-15_000470.1
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185925.521966-CDS-P-wetherbeei_contig1177:30..541683185925.521966-CDS-P-wetherbeei_contig1177:30..54Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1177 31..54 -
1683185925.532267-CDS-P-wetherbeei_contig1177:409..5531683185925.532267-CDS-P-wetherbeei_contig1177:409..553Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1177 410..553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1177.2.1prot_P-wetherbeei_contig1177.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1177 31..553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1177.2.1

>prot_P-wetherbeei_contig1177.2.1 ID=prot_P-wetherbeei_contig1177.2.1|Name=mRNA_P-wetherbeei_contig1177.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=56bp
QKRVRTENTRFKQLAEEFMNVEGEATIDEDLMRELREMKEKMAGPGDKYA
NDTRKY
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mRNA from alignment at P-wetherbeei_contig1177:31..553-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1177.2.1 ID=mRNA_P-wetherbeei_contig1177.2.1|Name=mRNA_P-wetherbeei_contig1177.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=523bp|location=Sequence derived from alignment at P-wetherbeei_contig1177:31..553- (Phaeothamnion wetherbeei SAG_119_79)
CAGAAACGAGTGCGGACGGAGAACACGCGGTTCAAGCAGCTGGCGGAGGA
GTTCATGAACGTGGAGGGGGAGGCAACCATCGACGAGGATCTAATGCGAG
AGCTGCGGGAGATGAAGGAAAAGATGGCCGGCCCTGGAGACAAGGTATGT
CGCTTAGTTTGTTGATCTGCCGTTCGGCCGTTCGGTGGGTTAAATCTAGT
CTGAGGGGCCAGCCGCCCCGCTTCTGATTCCGGCTCATTTCAGCTATTCA
ATTCGAGCGGTCTTCTGTTTGTTCCGGGGAAGGCCGTGGATTTCTGCGGG
CGTGGGGTTGTGCGCCTCCGTTGAGTTTGAGTTGACGTGGCGCGAGCGTT
GCCGAGCGAGGGTGTTATGCCAGGCGCCCGCCTACTGGCCGATGTTTTAC
TGCCAAAGTCGCTTTCTGCCGTAGCGTCCGGTTGTTATTCATCGGTGTGC
AATCTGATGCTGCAATCGCTCCTCCCGCCTTTCTTCCTTACTCTCGCAGT
ACGCCAATGACACGCGGAAGTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1177:31..553-

>mRNA_P-wetherbeei_contig1177.2.1 ID=mRNA_P-wetherbeei_contig1177.2.1|Name=mRNA_P-wetherbeei_contig1177.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig1177:31..553- (Phaeothamnion wetherbeei SAG_119_79)
CAGAAACGAGTGCGGACGGAGAACACGCGGTTCAAGCAGCTGGCGGAGGA
GTTCATGAACGTGGAGGGGGAGGCAACCATCGACGAGGATCTAATGCGAG
AGCTGCGGGAGATGAAGGAAAAGATGGCCGGCCCTGGAGACAAGTACGCC
AATGACACGCGGAAGTAC
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