mRNA_P-wetherbeei_contig11761.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11761.1.1
Unique NamemRNA_P-wetherbeei_contig11761.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11761.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11761contigP-wetherbeei_contig11761:924..2098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1176
Hectar predicted targeting categoryother localisation
Exons1
Cds size1170
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185925.378487-UTR-P-wetherbeei_contig11761:923..9281683185925.378487-UTR-P-wetherbeei_contig11761:923..928Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11761 924..928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185925.3862767-CDS-P-wetherbeei_contig11761:928..20981683185925.3862767-CDS-P-wetherbeei_contig11761:928..2098Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11761 929..2098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11761.1.1prot_P-wetherbeei_contig11761.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11761 929..2098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11761.1.1

>prot_P-wetherbeei_contig11761.1.1 ID=prot_P-wetherbeei_contig11761.1.1|Name=mRNA_P-wetherbeei_contig11761.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=390bp
MAFLRRATGRDSERAERDLADRDRLRSDPGWRSVSPLRPPSPPVSLGSPQ
LVPPSTKSPLQSAAAAATATARPPGGKFFNFAECTVADRGIEGTAPTPMR
VTVSTGSLVSPPLSSPSLIASLSSPHQQQQAEMPLPSPGARAVLCIKARP
AAVAVAAAAAARGKSRSPMVGGGGRTGNGGGGSRGGDQQQVPTFTPRAGC
GDARRSSDEDRMQELTDICDKLCQFHVQRLLARSPQPPQPQTPQQQPQQL
LPQKVLHGRGHVSGFGSAFGSGALLLPPPESADAEASAARGSEGVEGVAE
PVLTMGAFTPLVAANGNSSGGLRVAVSGASSVPAPAPALAPMSGPAAAAA
ALPESLGSQLSGDAYELLAVQLGLSAVMVEGAAEETWQRA
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mRNA from alignment at P-wetherbeei_contig11761:924..2098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11761.1.1 ID=mRNA_P-wetherbeei_contig11761.1.1|Name=mRNA_P-wetherbeei_contig11761.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1175bp|location=Sequence derived from alignment at P-wetherbeei_contig11761:924..2098+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCGATGGCCTTCCTGCGGCGGGCGACCGGCCGGGATTCGGAGCGCGCC
GAGCGGGATCTGGCGGACCGGGATCGGTTGCGGTCAGACCCCGGATGGCG
ATCGGTGTCGCCGCTGCGTCCGCCGTCGCCACCAGTGTCGCTGGGGTCGC
CGCAGCTCGTGCCGCCGTCGACAAAGTCTCCTTTGCAATCGGCGGCGGCC
GCCGCAACCGCGACGGCGCGCCCTCCAGGCGGCAAATTCTTCAACTTTGC
TGAGTGTACCGTCGCCGACCGCGGCATCGAAGGCACCGCGCCGACGCCGA
TGCGCGTAACAGTGTCCACGGGTTCGCTTGTATCTCCGCCGCTCAGCTCG
CCGTCTCTCATTGCATCGCTGTCATCGCCGCATCAACAGCAGCAGGCGGA
AATGCCGCTGCCTTCGCCGGGCGCGCGGGCGGTGCTGTGCATCAAGGCGC
GGCCGGCGGCAGTGGCCGTGGCGGCGGCGGCCGCCGCGCGCGGCAAGTCT
CGCTCCCCCATGGTCGGCGGAGGGGGCAGAACTGGCAACGGCGGAGGCGG
CAGCCGCGGCGGAGATCAGCAGCAGGTCCCGACGTTCACGCCGCGCGCCG
GTTGCGGCGACGCACGACGTTCGTCGGACGAGGATCGGATGCAGGAGCTG
ACGGACATTTGCGATAAGCTCTGTCAGTTCCACGTCCAGCGGCTGCTGGC
GCGCTCACCGCAGCCTCCACAGCCGCAGACTCCGCAGCAGCAGCCGCAGC
AGCTGCTGCCGCAAAAAGTTCTGCATGGACGAGGGCATGTCAGCGGGTTT
GGTAGCGCTTTTGGCTCCGGAGCGCTGCTGCTGCCGCCGCCCGAGTCGGC
CGACGCGGAAGCGAGCGCGGCTCGGGGCTCGGAAGGCGTGGAAGGCGTGG
CTGAGCCAGTGTTGACGATGGGCGCCTTTACTCCTCTTGTCGCTGCCAAT
GGCAATAGCTCTGGCGGGTTGAGAGTAGCCGTGAGCGGCGCTTCGTCGGT
GCCGGCGCCGGCGCCGGCTCTGGCGCCAATGTCGGGCCCAGCGGCGGCTG
CGGCGGCGCTCCCAGAGTCGTTGGGCTCGCAGCTATCTGGCGACGCCTAC
GAATTGCTGGCAGTGCAGCTGGGGCTGTCGGCAGTCATGGTGGAGGGCGC
CGCCGAGGAGACGTGGCAGCGGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11761:924..2098+

>mRNA_P-wetherbeei_contig11761.1.1 ID=mRNA_P-wetherbeei_contig11761.1.1|Name=mRNA_P-wetherbeei_contig11761.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1170bp|location=Sequence derived from alignment at P-wetherbeei_contig11761:924..2098+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTTCCTGCGGCGGGCGACCGGCCGGGATTCGGAGCGCGCCGAGCG
GGATCTGGCGGACCGGGATCGGTTGCGGTCAGACCCCGGATGGCGATCGG
TGTCGCCGCTGCGTCCGCCGTCGCCACCAGTGTCGCTGGGGTCGCCGCAG
CTCGTGCCGCCGTCGACAAAGTCTCCTTTGCAATCGGCGGCGGCCGCCGC
AACCGCGACGGCGCGCCCTCCAGGCGGCAAATTCTTCAACTTTGCTGAGT
GTACCGTCGCCGACCGCGGCATCGAAGGCACCGCGCCGACGCCGATGCGC
GTAACAGTGTCCACGGGTTCGCTTGTATCTCCGCCGCTCAGCTCGCCGTC
TCTCATTGCATCGCTGTCATCGCCGCATCAACAGCAGCAGGCGGAAATGC
CGCTGCCTTCGCCGGGCGCGCGGGCGGTGCTGTGCATCAAGGCGCGGCCG
GCGGCAGTGGCCGTGGCGGCGGCGGCCGCCGCGCGCGGCAAGTCTCGCTC
CCCCATGGTCGGCGGAGGGGGCAGAACTGGCAACGGCGGAGGCGGCAGCC
GCGGCGGAGATCAGCAGCAGGTCCCGACGTTCACGCCGCGCGCCGGTTGC
GGCGACGCACGACGTTCGTCGGACGAGGATCGGATGCAGGAGCTGACGGA
CATTTGCGATAAGCTCTGTCAGTTCCACGTCCAGCGGCTGCTGGCGCGCT
CACCGCAGCCTCCACAGCCGCAGACTCCGCAGCAGCAGCCGCAGCAGCTG
CTGCCGCAAAAAGTTCTGCATGGACGAGGGCATGTCAGCGGGTTTGGTAG
CGCTTTTGGCTCCGGAGCGCTGCTGCTGCCGCCGCCCGAGTCGGCCGACG
CGGAAGCGAGCGCGGCTCGGGGCTCGGAAGGCGTGGAAGGCGTGGCTGAG
CCAGTGTTGACGATGGGCGCCTTTACTCCTCTTGTCGCTGCCAATGGCAA
TAGCTCTGGCGGGTTGAGAGTAGCCGTGAGCGGCGCTTCGTCGGTGCCGG
CGCCGGCGCCGGCTCTGGCGCCAATGTCGGGCCCAGCGGCGGCTGCGGCG
GCGCTCCCAGAGTCGTTGGGCTCGCAGCTATCTGGCGACGCCTACGAATT
GCTGGCAGTGCAGCTGGGGCTGTCGGCAGTCATGGTGGAGGGCGCCGCCG
AGGAGACGTGGCAGCGGGCG
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