mRNA_P-wetherbeei_contig11752.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11752.1.1
Unique NamemRNA_P-wetherbeei_contig11752.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11752.1.1 vs. uniprot
Match: D8LTK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK2_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.720e-23
Identity = 69/177 (38.98%), Postives = 89/177 (50.28%), Query Frame = 1 
Query:    1 GLSKAQAVLLRQSWQEGAVAAKAARMTRRRRDGLAQHREKGPDMVWRTVESECYVRECISALPEKEARLLTYGPFVEGKNCTHRPRTRG------RRXXXXXXXXPGSGTDEEKKVGAVEDKDAFFYTMDAKRREHETAMELRRGQQAYAAMLDKKVCPKCGAVQSYDEVGCRRSRC 513
            GLS+AQ +LLR+S + G        ++ RR + LAQ +E  P    R   +E  V E    + +KE R   +    + K CTHRP TR        R         G G + +   G     DAF Y M A+ R    AME RRG+ AY A+LDK+VCP CGA QSYDEV  +R  C
Sbjct:  214 GLSQAQVLLLRRSRKLGREGDAPRTVSERRTEQLAQPKEHRPATRTRNSATEALVEELTKTMTDKEKRAFLHACLADAKECTHRPYTRSAAAAARHRKGGAGDGATGGGEEAKDGSGPGASIDAFLYRMGAQERAKNAAMEHRRGELAYKAVLDKRVCPGCGAEQSYDEVEEKRKIC 390
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BLAST of mRNA_P-wetherbeei_contig11752.1.1 vs. uniprot
Match: A0A6H5JHI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI1_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.830e-17
Identity = 58/152 (38.16%), Postives = 73/152 (48.03%), Query Frame = 1 
Query:   55 VAAKAARMTRRRRDGLAQHREKGPDMVWRTVESECYVRECISALPEKEARLLTYGPFVEGKNCTHRPRTRG------RRXXXXXXXXPGSGTDEEKKVGAVEDKDAFFYTMDAKRREHETAMELRRGQQAYAAMLDKKVCPKCGAVQSYDEV 492
            VAA AAR  + +       R +    V R   ++  V E    + +KE R   +    + K CTHRP TR        R         G G + +   G     DAF Y MDA+ R    AME RRG+ AY A+LDK+VCP CGA QSYDEV
Sbjct:  293 VAALAAREVQMKTRWYLVVRRQLASKVSRNPATDALVEELTKTMTDKEKRAFLHACLADAKECTHRPYTRSAAAVARHRRGGAGDGATGGGEEAKDGSGPGASIDAFLYRMDAQERAKNAAMEHRRGELAYKAVLDKRVCPDCGAEQSYDEV 444
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BLAST of mRNA_P-wetherbeei_contig11752.1.1 vs. uniprot
Match: F0Y7E4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7E4_AURAN)

HSP 1 Score: 67.4 bits (163), Expect = 6.450e-10
Identity = 41/104 (39.42%), Postives = 50/104 (48.08%), Query Frame = 1 
Query:  202 RLLTYGPFVEGKNCTHRPRTRGRRXXXXXXXXPGSGTDEEKKVGAVEDKDAFFYTMDAKRREHETAMELRRGQQAYAAMLDKKVCPKCGAVQSYDEVGCRRSRC 513
            RL  +G + + ++C  RP+TR            G G D E K       D F    DA  R+     E   G+  Y   LDKKVCP CGAVQSYDEV  +R RC
Sbjct: 1307 RLARHGSYGDARHCVFRPKTRKDPNSEVKESSDGEGPDAEAKT------DNFIQRQDAWTRKVRREKEAAIGKANYDVKLDKKVCPSCGAVQSYDEVEEKRDRC 1404
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BLAST of mRNA_P-wetherbeei_contig11752.1.1 vs. uniprot
Match: A0A482S3J2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3J2_9ARCH)

HSP 1 Score: 63.5 bits (153), Expect = 1.180e-8
Identity = 39/121 (32.23%), Postives = 57/121 (47.11%), Query Frame = 1 
Query:  175 ISALPEKEA--------RLLTYGPFVEGKNCTHRPRTRGRRXXXXXXXXPGSGTDEEKKVGAVEDKDAFFYTMDAKRREHETAMELRRGQQAYAAMLDKKVCPKCGAVQSYDEVGCRRSRC 513
            +SA+P KE         R L Y    E + CT RP  R  +           G  E+ +        +F    +A+ R     ++ + G++ Y A++DKKVCP+CGA QSYDEV  +R  C
Sbjct:  242 LSAVPRKEPADWERSADRTLRYLTLEEAQECTFRPHLRSAQKKNNREQREDDGAKEDPRF-------SFISRQEAEERNRREELQFKMGKKDYDALVDKKVCPQCGAKQSYDEVKEKRKLC 355
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BLAST of mRNA_P-wetherbeei_contig11752.1.1 vs. uniprot
Match: A0A7S3ZTV2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTV2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.830e-6
Identity = 40/124 (32.26%), Postives = 57/124 (45.97%), Query Frame = 1 
Query:  151 SECYVRECISALPEKEARLLTYGPFVEGKNCTHRPRTRGRRXXXXXXXXPGSGTDEEKKVGAVEDKDA---FFYTMDAKRREHETAMELRRGQQAYAAMLDKKVCPKCGAVQSYDEVGCRRSRC 513
            ++ Y R         + RL  +    +  NCT RPR              G    E++K    ED+D    F    DA  R+     E R+G++ Y  ++DKK+CP CGAVQ YDE+  +R RC
Sbjct:  314 TDVYGRTVKDVTNAAQKRLFKFASRDDALNCTFRPRL-----------GKGDPLGEDQK----EDEDNPNNFIQRQDAWGRKVRQDREHRKGEKEYGYVIDKKMCPSCGAVQKYDEIVNKRDRC 422
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BLAST of mRNA_P-wetherbeei_contig11752.1.1 vs. uniprot
Match: A0A835ZD53_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD53_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 6.020e-5
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:  355 FFYTMDAKRREHETAMELRRGQQAYAAMLDKKVCPKCGAVQSYDEVGCRRSRC 513
            F   MDA+       +E RR ++AY    DKK CP+CGAVQSYDE   ++++C
Sbjct:   24 FLSRMDAQTAHSRRKLEERRAEEAYNDRQDKKSCPQCGAVQSYDEYAKKKTKC 76
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11752.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LTK2_ECTSI2.720e-2338.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHI1_9PHAE1.830e-1738.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y7E4_AURAN6.450e-1039.42Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A482S3J2_9ARCH1.180e-832.23Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3ZTV2_9STRA1.830e-632.26Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835ZD53_9STRA6.020e-545.28Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11752contigP-wetherbeei_contig11752:906..2017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTK2
Model size513
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.46e-24
EggNOG OGs2AZKF@1|root,2RZZN@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-28_003770.1
Cds size513
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185925.0089257-CDS-P-wetherbeei_contig11752:905..10451683185925.0089257-CDS-P-wetherbeei_contig11752:905..1045Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11752 906..1045 +
1683185925.020173-CDS-P-wetherbeei_contig11752:1336..15351683185925.020173-CDS-P-wetherbeei_contig11752:1336..1535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11752 1337..1535 +
1683185925.0299814-CDS-P-wetherbeei_contig11752:1843..20171683185925.0299814-CDS-P-wetherbeei_contig11752:1843..2017Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11752 1844..2017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11752.1.1prot_P-wetherbeei_contig11752.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11752 906..2017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11752.1.1

>prot_P-wetherbeei_contig11752.1.1 ID=prot_P-wetherbeei_contig11752.1.1|Name=mRNA_P-wetherbeei_contig11752.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
GLSKAQAVLLRQSWQEGAVAAKAARMTRRRRDGLAQHREKGPDMVWRTVE
SECYVRECISALPEKEARLLTYGPFVEGKNCTHRPRTRGRRRGGGGGGDP
GSGTDEEKKVGAVEDKDAFFYTMDAKRREHETAMELRRGQQAYAAMLDKK
VCPKCGAVQSYDEVGCRRSRC
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mRNA from alignment at P-wetherbeei_contig11752:906..2017+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11752.1.1 ID=mRNA_P-wetherbeei_contig11752.1.1|Name=mRNA_P-wetherbeei_contig11752.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1112bp|location=Sequence derived from alignment at P-wetherbeei_contig11752:906..2017+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCTGTCCAAGGCGCAGGCAGTGCTGCTGCGGCAGAGTTGGCAGGAGGG
GGCAGTGGCGGCGAAGGCGGCGCGGATGACGCGACGGCGGCGCGACGGCC
TCGCGCAGCACAGAGAAAAGGGGCCCGACATGGTGTGGAGGTATGTTTCG
AGTGTTGTGGATTCGTGCTTTCTTACGTTACGTTTTGATCTCTCCCCTTA
TATCCGCACAAGCGGGAAAGCCGGTGAAACGGAGCAAAACCACTGCTGCT
GACGCCGGCAACGCCGCCTCGCCGTTATCGTTACATCGCTCAACGCCCCC
ATGAAATTTTTTAACCCTTGCTAACGCAAATCCCCACCGAACACTACTTA
CTACCTTTACCTTGTCCACCCCGCTCACCCTCCTGCTACTTTACTGCCCA
ATCCCTCTATTTATCCCTCGTCATGTCACAGGACGGTGGAATCGGAGTGC
TACGTCCGCGAGTGCATCAGCGCGCTCCCGGAGAAGGAGGCGCGGCTGCT
CACTTACGGCCCGTTTGTCGAGGGCAAGAACTGCACCCATCGGCCCCGGA
CGAGAGGCCGCCGCCGCGGCGGGGGCGGGGGTGGCGACCCTGGCAGCGGG
ACAGACGAGGAGAAGAAGGTGGGGGCCGTTGTAAGATTGCTTGTTTATGA
TGGTTCAGGCAAAATAAGCGAAGTCAGGGTGGGCAATGGCAGTATTGCGC
TTTTGTTAGCCTTCCCGTCCGCTTTTTATATCATTTCTTGTGTCTGTAAG
AGTGCTTAGGAAGTAGCGGCTCAAATCCCGCAGACGGAAGTTTCCTGTAG
AAGTAATGGCTGCCTTGTCTATGATCTACCGTCTTACCGACACGTTTTAC
AACCGCTCCCTTTCTTCCCTTCCTCGAACGCAACCTTTACCGCCTGCGCC
GCTTTCTTGCATGCGCCGCGCCTGCCGCGCCATCGCAGGAAGACAAAGAT
GCCTTCTTCTACACGATGGATGCAAAGCGGCGGGAGCACGAGACGGCGAT
GGAGCTGCGGCGCGGCCAGCAGGCGTACGCCGCCATGCTCGACAAGAAAG
TATGCCCCAAGTGCGGCGCCGTGCAGTCCTACGACGAGGTGGGTTGTAGG
CGATCGCGGTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11752:906..2017+

>mRNA_P-wetherbeei_contig11752.1.1 ID=mRNA_P-wetherbeei_contig11752.1.1|Name=mRNA_P-wetherbeei_contig11752.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig11752:906..2017+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCTGTCCAAGGCGCAGGCAGTGCTGCTGCGGCAGAGTTGGCAGGAGGG
GGCAGTGGCGGCGAAGGCGGCGCGGATGACGCGACGGCGGCGCGACGGCC
TCGCGCAGCACAGAGAAAAGGGGCCCGACATGGTGTGGAGGACGGTGGAA
TCGGAGTGCTACGTCCGCGAGTGCATCAGCGCGCTCCCGGAGAAGGAGGC
GCGGCTGCTCACTTACGGCCCGTTTGTCGAGGGCAAGAACTGCACCCATC
GGCCCCGGACGAGAGGCCGCCGCCGCGGCGGGGGCGGGGGTGGCGACCCT
GGCAGCGGGACAGACGAGGAGAAGAAGGTGGGGGCCGTTGAAGACAAAGA
TGCCTTCTTCTACACGATGGATGCAAAGCGGCGGGAGCACGAGACGGCGA
TGGAGCTGCGGCGCGGCCAGCAGGCGTACGCCGCCATGCTCGACAAGAAA
GTATGCCCCAAGTGCGGCGCCGTGCAGTCCTACGACGAGGTGGGTTGTAG
GCGATCGCGGTGC
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