mRNA_P-wetherbeei_contig1174.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1174.3.1
Unique NamemRNA_P-wetherbeei_contig1174.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A836CM85_9STRA (RNA polymerase sigma-70 factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM85_9STRA)

HSP 1 Score: 273 bits (698), Expect = 1.500e-78
Identity = 148/318 (46.54%), Postives = 209/318 (65.72%), Query Frame = 3
Query: 1215 HFDETPDLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGA---EGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSK-LPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLSTTVGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGR-AMTLKQVGERFNVTRERIRQIEARALHKLR 2153
            HF + P+LLT ++E+ L +LVQ+RI W+  R +L +  G+ P+L EW+ A G  GG    E   ++VA  D+AK  M+SANLRLV+S+AR++K S  S+ LPL DL+QEG  GLVKAVE++DP++GFRFSTYA+WW+RQT+ RA+ +  RTIRLP+H+HD L  ++R GR L  ELGR A+  ELA R+ +  E+L +      +EP+SLS   G                   + T+G+ V D   +P+++     +++DV+ LL  L+PRE+ VLRMRYGLD G  + TL+ +G    VTRER+RQIE RAL +LR
Sbjct:   88 HFRQAPELLTKEEEVSLARLVQRRIQWEAVRNRLASEFGKEPTLSEWAVAVGFRGGYPLDEEFSQQVAEGDSAKAAMISANLRLVLSLARKHKASQGSRCLPLSDLVQEGILGLVKAVEKYDPERGFRFSTYATWWIRQTIARAVCDIGRTIRLPAHIHDSLRSVQRVGRSLSEELGRTASEEELAQRLGLTVEKLRWLHSCKYSEPISLSLQPGNGSGLRPDKQSL-------TSTVGDSVHDTNPTPEEYHNTMAIREDVDNLLSILTPREQTVLRMRYGLDSGGISETLEAIGVSIGVTRERVRQIERRALDRLR 398          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 274 bits (700), Expect = 7.160e-78
Identity = 150/344 (43.60%), Postives = 224/344 (65.12%), Query Frame = 3
Query: 1167 PTSQGRKAARMAGKQGHFDET---PDLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLSTTVGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHS 2189
            P++    A   + + G F ++     LL A++E+ L + VQ  IGW+  R  L+  LGRPP+LEEW+ + G+    + +RR++ R  +AK+ M+S+NLRLV+SIA+RY+   +  L L DLIQEG+ GLV+AVE+FDP+KGF+FSTY++WW++Q ++RAIA+QSRTIRLP H+HDLL+ +++  REL   LGR  T  ELA RM++  E+L +  E  R         V                     + +G+ + D G  P   TE  +L++D+E+L+  LSPRE+ V+RMR+GLD  +  TL+++G  F+VTRER+RQIEARALHKLRQP+ +  +R+++
Sbjct:  146 PSTAASAAGSSSNELGWFFKSIGQHSLLRAEEEVLLARKVQAMIGWEDVRDGLKDQLGRPPTLEEWASSVGMQ--PDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQ---KRGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAIADQSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLRFLQECSRP-------AVSMDAQRRAMTKKSSSAGKGGEVQLGDSIKDDGPCPTQVTEANMLKEDIEKLVCTLSPREQDVIRMRFGLDADKPKTLEEIGNVFSVTRERVRQIEARALHKLRQPYRNHKLREYA 477          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA)

HSP 1 Score: 273 bits (698), Expect = 1.560e-77
Identity = 160/324 (49.38%), Postives = 227/324 (70.06%), Query Frame = 3
Query: 1233 DLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLSTT--VGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHSVEV 2198
            DLLTAQ+E+ L + VQ  + W+  R +LE  L RPP+  EW+ A G+D   + ++R++ R+  AK  M+ +NLRLV+SIA+RY  S  + L + DL QEG+ GLVKAVE+FDP++GFRFSTYA+WW++Q+VMRAIA+QSRTIRLP H+HD L+ +R+  REL  +LGR  T  E+A    +  ++L +  +  R E +S      VGG  XXXXXXXXX       ++ + + +TD    P++     L++DD++RLL  LS RE+ V+RMR+GLDDG+A TL+++G+RF VTRERIRQIEARALHKLRQP+ +  ++Q+  E+
Sbjct:  185 DLLTAQEEVLLARHVQLLLKWEEVRERLEIELARPPTYAEWAAAVGVD--TKKLKRQIRRSQRAKAAMIESNLRLVISIAKRYT-SRTNTLSVQDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEEIAEAAGITVDKLQFLWKSSR-ETMSFEQEIRVGGAGXXXXXXXXX-------TVILSDSITDKEHMPEEKAALSLMKDDIDRLLGTLSVREQDVIRMRFGLDDGKAKTLEEIGKRFRVTRERIRQIEARALHKLRQPYRNHQIKQYVNEM 497          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A7S2KJI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJI8_9STRA)

HSP 1 Score: 270 bits (690), Expect = 1.890e-77
Identity = 155/374 (41.44%), Postives = 229/374 (61.23%), Query Frame = 3
Query: 1098 AQQRKQPVLGNAAIPSTSWDSERPTSQGRKAARMAGKQG-----HFDETP---DLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLSTTVGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHSVE 2195
            A   K+ ++    +     D+++  +  R       + G     H+ +T    DLL  ++E+ L + +Q  I W+  R +LE+ L RPP+  EW+ A  LD    G++R++ R+  AK  ++ +NLRLV+SIA+RY   V   +   DL QEGT GL +A E+FDP++GFRFSTYA+WW++Q +MRAIA+QSR IRLP HVHD L+ +RR  +EL   LGR  T  E+A +  +  ++L++ + K +   +S+ T +                      T+G+ + D+G +P D     +L+DDV R+L  LSPRE+AV+RMR+GLDDG+A TL+++G RF+VTRERIRQIEARALHKLRQP+     R HSV+
Sbjct:   48 ADANKEKMISERQLGGAKKDAKQMNNYARSVRATINESGEESISHYLKTMGNHDLLRREEEVILARHIQILIKWEEVREELESKLIRPPTYAEWAVAVNLD--VPGLKRQIRRSQRAKAALIESNLRLVVSIAKRY---VNRGMNFQDLCQEGTLGLTRATEKFDPERGFRFSTYATWWIKQGIMRAIADQSREIRLPVHVHDQLNGVRRVTKELSELLGRDPTDEEIAEKAKITVQKLTF-LRKAQQGTISIETPMN--MGAGKGSSSGGGSMGQNDKTMGDLLRDSGPAPVDLASNEMLKDDVSRMLCTLSPREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPY-----RNHSVK 408          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A835ZES3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA)

HSP 1 Score: 267 bits (682), Expect = 1.440e-76
Identity = 145/321 (45.17%), Postives = 217/321 (67.60%), Query Frame = 3
Query: 1233 DLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLSTTVGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHSVE 2195
            DLL  ++E+ LG+ +Q  + W+  + +L   L R PS  EW+   G+D   + ++  + R+  AK  M+SANLRL +SIA+RYK      L L DL+QEG+FGL+KA ERFDPDKGF+FSTYA+WW++Q++MRAIA+QSRTIRLP HVHDLL+ I+RA REL  ELGR  T  EL+ R+ +  +++ +Y E  R+  +S+  ++                   + +T+ + + D    P+D T++ +L++++ +LL  LSPRE+ V+R+R+GLDDGRA TL+++G+ F VTRER+RQIE+RAL KLRQP+ +  +R ++ E
Sbjct:   69 DLLKPEEEVTLGRHIQLGLEWEAAKEELAVRLERQPSRAEWAAHMGVD--EDTLKLIMIRSSRAKTTMISANLRLAVSIAKRYK---HRGLALSDLVQEGSFGLMKAAERFDPDKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDLLNSIKRATRELSLELGRTPTDEELSLRLQVPTQKIEFYREAARSV-LSMEQSLNNARKGSAASLGGK-----SDMTLEDSLRDPEPLPEDRTQQSMLKENMSQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 378          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A7R9ZH78_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZH78_9STRA)

HSP 1 Score: 267 bits (683), Expect = 6.570e-76
Identity = 149/327 (45.57%), Postives = 211/327 (64.53%), Query Frame = 3
Query: 1233 DLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLST------TVGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHSVE 2195
            DLL   +EI L + +Q  + W+ +R  LEA L RPP+  EW++          M+R++ R+  AK  +  +NLRLV+SIA+RY+      L   DL QEGT GL +A E+FDP++GFRFSTYA+WW++Q++MRAIA+Q RTIRLP H+HD L+ IR+  R+L  ELGR  +  E+AGR+D+  E++ + ++K     +S+ T      T G                     T+G+ V D  Q+P D  E  +L+DD++RL+  L+ RE+AV+RMR+GLDDG+A TL+++G RF+VTRERIRQIEARALHKLRQP+     R HSV+
Sbjct:  136 DLLKKNEEIILAREIQILVAWEKKREDLEANLMRPPTYAEWAEDIREGMTVPEMKRQIRRSLRAKSALTESNLRLVISIAKRYQ---NRGLNFQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQGRTIRLPVHIHDQLNVIRKVERDLSNELGREPSNEEVAGRVDLKPEKVEF-LKKVSKHSLSMETQLNSSKTKGSGAGTGGSKGTGGASSSERQFTLGDTVKDPKQAPMDMAEYGMLRDDMKRLICTLNSREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPY-----RNHSVK 453          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: B8C130_THAPS (RNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C130_THAPS)

HSP 1 Score: 261 bits (667), Expect = 1.750e-75
Identity = 144/322 (44.72%), Postives = 214/322 (66.46%), Query Frame = 3
Query: 1233 DLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLSTTVGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHSVEV 2198
            DLL   +EI L + +Q  I W+  R +LE  L RPP+ +EW+ A         +++++ R+  AK  +  +NLRLV+SIA+RY+      L + DL QEGT GL +A E+FDP++GFRFSTYA+WW++Q +MRAIA+Q+RTIRLP H+HD L  +R+A R+LQ ELGR AT  E+A ++ M  +++ + +++     +S+   +G                   S TI + + D  Q P D  + R+LQDDV RL+  L+ RE+AV+RMR+GLDDG+A TL+++G++F+VTRERIRQIEARALHKLRQP+ + +V+ ++ E+
Sbjct:   14 DLLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEPGMTVTQIKKQIRRSLRAKAALTESNLRLVISIAKRYQ---GRGLNMQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQGIMRAIADQARTIRLPVHIHDQLSIVRKAERDLQNELGRDATKEEVAAKVGMKPDKIEF-LKRASVGSISMEQELG-------------TSGSERSFTIQDTLGDPDQKPVDMAQYRMLQDDVGRLICTLNAREQAVIRMRFGLDDGKAKTLEEIGKKFSVTRERIRQIEARALHKLRQPYRNHTVKCYANEL 318          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A835ZBY3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA)

HSP 1 Score: 259 bits (663), Expect = 1.430e-74
Identity = 145/321 (45.17%), Postives = 215/321 (66.98%), Query Frame = 3
Query: 1233 DLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLSTTVGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHSVE 2195
            DLL  ++EI L + ++  I W+  R +L   L R PSL EW+   G+D   + ++  + R+  AK  M+SANLRL +SIA+RY+   +  L L DLIQEG+FGL+KA ERFDP+KGF+FSTYA+WW++Q++MRAIA+QSRTIRLP HVHD L+ ++RA REL  ELGR  T  ELA R+ +  +++ +Y  +D A+ V    ++                   + +T+ + + D    P+D T+  +L++++ +LL  LSPRE+ V+R+R+GLDDGRA TL+++G+ F VTRER+RQIE+RAL KLRQP+ +  +R ++ E
Sbjct:   28 DLLKPEEEIALARQIKLGIEWEAAREELAMRLERTPSLGEWAAHMGVD--EDTLKLIMIRSARAKSTMISANLRLAVSIAKRYR---RRGLALPDLIQEGSFGLMKAAERFDPEKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDFLNSVKRATRELSLELGRHPTDEELAMRLQVTAQKIVFY--RDAAQSV---LSMEQSRNFASRKGSGASQGGKSDMTLEDSLRDPEPLPEDRTQHAMLKENLLQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 338          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A7S4VUL7_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VUL7_9STRA)

HSP 1 Score: 262 bits (669), Expect = 1.740e-73
Identity = 155/324 (47.84%), Postives = 221/324 (68.21%), Query Frame = 3
Query: 1233 DLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSL------STTVGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQH 2186
            +LL   +EI LG+ +Q  + W+ +R  LEA L RPP+  EW+ +   D     M+R++ R+  AK  +  +NLRLV+SIA+RY+      L + DL QEGT GL +A E+FDP++GFRFSTYA+WW++Q VMRAIA+Q+RTIRLP H+HD L+ IR+A R+L  ELGR  T  E++ ++    +++ + +++     +S+      S T G     XXXXXXXXXXXX    T+ + + D  Q P D    ++L+DDV RL+  L+ RE+AV+RMR+GLDDG+A TL+++G RF+VTRERIRQIEARALHKLRQP+ + SV+ +
Sbjct:  176 ELLNKNEEIILGREIQILVKWEEQRELLEAQLLRPPTYAEWAASIRSDMSVPEMKRQIRRSLRAKAALTESNLRLVISIAKRYQ---NRGLSMQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQAVMRAIADQARTIRLPVHIHDQLNQIRKAERDLHNELGREPTKEEISEKIGFKADKVEF-LKRAAMGSISMEMELRSSKTKGSGASTXXXXXXXXXXXXERGFTLEDTLKDPDQKPADIAATQMLKDDVSRLICTLNTREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPYRNHSVKSY 495          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A6S8QQK8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8QQK8_9STRA)

HSP 1 Score: 258 bits (658), Expect = 2.080e-72
Identity = 151/324 (46.60%), Postives = 218/324 (67.28%), Query Frame = 3
Query: 1233 DLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLSTTVGGXXXXXXXXXXXXXXXXXT---SLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHSVE 2195
            +LL   +EI L + +Q  IGW+G+R +LEA L RPP+  EW+           M++++ R+  AK  +  +NLRLV+SIA+RY+      L   DL QEGT GL +A E+FDP++GFRFSTYA+WW++Q++MRAIA+Q+RTIRLP H+HD L  + +A R+LQ  LGR  T  E+A ++++  ER+ + +++   + +S+ T +G       XXXXXXXXXXX      T+ + + D  Q P    E  +L+DD+ RL+  L+ RE+AV+RMR+GLDDG+  TL+++G +F+VTRERIRQIEARALHKLRQP+     R H V+
Sbjct:  140 ELLKKNEEIILAREIQVLIGWEGKREELEAKLLRPPTYAEWASNVQSGMTVPEMKKQIRRSLRAKTALTESNLRLVISIAKRYQ---NRGLNFQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQARTIRLPVHIHDQLALMNKAERDLQQSLGRDPTKEEIAAKIEVKPERIEF-LKRSALKAISIETELGSGKTKGSXXXXXXXXXXXXXGRQFTLQDTLKDPEQKPDFMAENNMLKDDISRLICTLNSREQAVIRMRFGLDDGKPKTLEEIGRKFSVTRERIRQIEARALHKLRQPY-----RNHGVK 454          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CM85_9STRA1.500e-7846.54RNA polymerase sigma-70 factor n=1 Tax=Tribonema m... [more]
A0A7S2WX55_9STRA7.160e-7843.60Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1B782_9STRA1.560e-7749.38Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2KJI8_9STRA1.890e-7741.44Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A835ZES3_9STRA1.440e-7645.17RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A7R9ZH78_9STRA6.570e-7645.57Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B8C130_THAPS1.750e-7544.72RNA polymerase (Fragment) n=1 Tax=Thalassiosira ps... [more]
A0A835ZBY3_9STRA1.430e-7445.17RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A7S4VUL7_9STRA1.740e-7347.84Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A6S8QQK8_9STRA2.080e-7246.60Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1174contigP-wetherbeei_contig1174:4019..7713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps33682
PFAMsSigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4
Model size3194
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorychloroplast
Exons3
Evalue1.44e-81
EggNOG OGsCOG0568@1|root,2QVXR@2759|Eukaryota,2XA8K@2836|Bacillariophyta
Ec32 ortholog descriptionRNA polymerase sigma-70 like domain
Ec32 orthologEc-10_006180.1
DescriptionSigma-70 region 3
Cds size1329
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185924.5567284-UTR-P-wetherbeei_contig1174:4018..50081683185924.5567284-UTR-P-wetherbeei_contig1174:4018..5008Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1174 4019..5008 -
1683185924.5864043-UTR-P-wetherbeei_contig1174:6838..77131683185924.5864043-UTR-P-wetherbeei_contig1174:6838..7713Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1174 6839..7713 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185924.5649035-CDS-P-wetherbeei_contig1174:5008..51311683185924.5649035-CDS-P-wetherbeei_contig1174:5008..5131Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1174 5009..5131 -
1683185924.5720427-CDS-P-wetherbeei_contig1174:5395..62501683185924.5720427-CDS-P-wetherbeei_contig1174:5395..6250Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1174 5396..6250 -
1683185924.57931-CDS-P-wetherbeei_contig1174:6487..68381683185924.57931-CDS-P-wetherbeei_contig1174:6487..6838Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1174 6488..6838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1174.3.1prot_P-wetherbeei_contig1174.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1174 5009..6838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1174.3.1

>prot_P-wetherbeei_contig1174.3.1 ID=prot_P-wetherbeei_contig1174.3.1|Name=mRNA_P-wetherbeei_contig1174.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=443bp
MDGAARRDHMRRRRSMHTRVLVGLGLLACGAAFAPPVSTPLAAARQRAAA
AAATTETIERRPRRTVPRRQQTDEAQQRKQPVLGNAAIPSTSWDSERPTS
QGRKAARMAGKQGHFDETPDLLTAQDEIKLGKLVQKRIGWDGERTKLEAA
LGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIAR
RYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTV
MRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDM
AEERLSYYMEKDRAEPVSLSTTVGGASASKPGGGGGSSGGGGTSLTIGER
VTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTL
KQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHSVEVL*
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mRNA from alignment at P-wetherbeei_contig1174:4019..7713-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1174.3.1 ID=mRNA_P-wetherbeei_contig1174.3.1|Name=mRNA_P-wetherbeei_contig1174.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3695bp|location=Sequence derived from alignment at P-wetherbeei_contig1174:4019..7713- (Phaeothamnion wetherbeei SAG_119_79)
GTCATCGACCCGGCCGCCACGCGTCGCCTCGTCTGCTCCGACCTCGAGGT GCTGCGGACCAAGGAACCGCGCAAGTTCGCCAAGAAGCACGGCAACATCC CACTTTAGGCTCTGGCTTTGGGCTATTCTAGATCTGGCTCTAGCTCTAGC GCAGAGCACCAATTCTAACGCTGGTGCTAGAGCTAGCCGGCGAGAGGGAG GTTCGACTTTATGCACGCAAGCTCTTGCTAGCTCCGCGTTGCCGTCGCTG CAGCACGGTCCGAGGCGGCCGGCGGCGTTCGGTTTCATCTCCTCTCGTCG GGTCATGGATCGGCGTCAGCCGATGCCGTTTCGGGCCGCGCGGCGCTTCG CTCAGGCGCCGCTGCCGGCGACCCGATATCTTCTTGTTGCTCCTCCTTGC TGACTTTTGAACGAGGTGGTCGGCTGGCGGTGGTGTCAGCTGGCAGAATC CGCCGGCGCCGCGTCCGCCTTCCATCTGAGAGATAACGTCCAAATAACGG GTGTACATTTCTACTAGCGTATAGGTTGAGAGGGTCTTTCCGCGCGGCCG TTTTTATCCCAGTGTTTTCGTGGAGCCACAAAAAGCCACACGCCCGGCCC CACGCTTCCCCTCCTCCCGCCAGTAGTGAGCATCACCGGACACCCTCGCC GCACCCCTGCACCTGCAGCGTCGGCTGGATTGAACTAGGACGAAAATCGT CTGGTCATCCACGAAGGTTGACGCAGAGACTTAGAAAGCTACCTGGACGG CGTGCCTGCGACGGATCTAGGCTGGTGGCTCAGGAGGTGAACGCGAGAGG CAATCGCTCCTGCGGGATCCCGTTTGATTCGGACGAGCGAAGGACCTGGC CACGTGCAGTAAGAGGGGGCCAGACATGGACGGAGCAGCGAGAAGGGATC ACATGAGGAGACGACGGTCGATGCACACAAGAGTGCTCGTCGGCCTGGGG CTTTTGGCGTGTGGCGCGGCCTTCGCGCCGCCCGTGAGCACGCCTTTGGC GGCTGCGCGCCAAAGAGCCGCAGCTGCGGCGGCGACCACGGAAACGATAG AGCGGAGACCACGCAGGACAGTTCCGCGGAGGCAACAGACGGACGAGGCG CAGCAACGAAAACAACCCGTGCTCGGCAACGCCGCGATCCCGTCAACCTC ATGGGATAGCGAGCGACCAACATCACAAGGGCGGAAAGCAGCGCGGATGG CGGGCAAACAGGGCCACTTCGACGAGGTAACCAGTGTTTGGGGTTGCATT TTAGAGCACTGCTTGCGCGTGCTGCGCCATCCCGTTCTGCTAAACAAGTT TGGGCCCCTTACTTTCTCCAAGTTTTCTAGCGACTCCTTGCGAACCAAAA GCTTCCGTCGGTGGTATAACTTTGCTCTCCTGGCGCCCTTCCCGCACCTC CTTGCGTCCACCAAACTCTGTCGTTCATTTATTCTATTCTGTGATTTGCC GTTCCATCGGCAGACGCCCGACCTGCTGACGGCGCAGGATGAAATCAAGC TGGGGAAGCTCGTGCAGAAGCGCATCGGGTGGGATGGCGAGCGGACGAAG CTAGAGGCTGCGCTTGGCCGGCCGCCGTCGCTCGAGGAATGGTCGCAGGC CTGCGGCCTCGATGGTGGCGCCGAGGGCATGCGGCGGCGCGTCGCGCGCA CCGACGCAGCCAAGGAGCGCATGGTCTCGGCCAACCTGCGGCTGGTGATG AGCATCGCGCGGCGGTACAAGTTTTCCGTGCAGTCGAAGCTGCCGCTGGG TGACCTGATCCAGGAGGGAACTTTCGGGCTTGTCAAGGCCGTGGAACGGT TCGACCCGGACAAGGGCTTCCGCTTCTCGACCTACGCCAGCTGGTGGGTA CGTCAGACGGTGATGCGCGCTATCGCGGAGCAGTCGCGGACCATCCGTCT CCCGTCGCATGTCCACGACCTGCTGCACCACATCCGGCGCGCGGGCCGTG AGCTGCAGGCCGAGCTCGGCCGCCCGGCGACGCTCTCCGAGCTGGCCGGA CGCATGGACATGGCGGAGGAGCGCCTCTCCTATTACATGGAGAAGGACCG GGCCGAGCCCGTGTCGCTGTCAACGACCGTCGGCGGCGCGTCCGCCTCCA AGCCCGGCGGCGGCGGCGGAAGCTCCGGCGGCGGTGGCACGTCGCTGACG ATCGGGGAGCGAGTGACGGACGCCGGGCAGTCGCCGCAGGACTTTACAGA GAAGCGGCTGCTACAGGATGACGTCGAACGGCTGCTGTGGAAGCTGTCGC CGCGCGAGCGGGCGGTCCTGCGCATGCGGTACGGCCTCGACGACGGCCGA GCCATGACCCTCAAGCAGGTGCGCGCGCACGCGGGTCTTGGTGCTGTGTG CGGGGTTGGCGGACGTCCTCGGGGGTTGCTGCCAGGGAAAGGGATGACTT TGAGTCCGGAGCGGTGGTGACGCCGATGGTGGCGGCGGTAGCGGCGGCTA CATCGCGTGGCAGCAACTACGGCCGCGCTTGCTCTTTTTTGGAAAACCGT TTCGTGGTAGGTCCGCATTGTTGCTCAGTAACCGTGTGCCGTTTTGCCTC TCGTGCCGCTCCTTCCGACGTTCTTCGTACAGGTCGGGGAGCGGTTCAAC GTGACGCGCGAACGCATCCGGCAAATCGAGGCGCGGGCGTTGCATAAGTT GCGGCAGCCGTTCATCAGCTGCAGCGTCCGGCAGCACAGCGTCGAGGTCT TATAGCCCCCGCCAACGCAGGCGATGGCGGCGGCGCTAAAGGCGAATCTA TTTGAGGCCGGCCGTGCGTGCTGGTCGGCCGTGATTGACGGGCTGCTTAA ATGCCGGAGGCAGTACGAATCGACGGCCGCGGCGCGCTAAGCCCAGAACT CGCTCCCTGTCTTTCGAGCTCTACGGTCGGAGGAGAGGGGGGCGGGCTTT TGGCTCGGCTCATGCGTCGAGGTGGAGCCAGCAGCGGCATCGACGGCACT GCGGCTGCTCATCCTCGCTTCGAGGTAGCGGGCACAATGTCGGCCGCTTC TTGGCTGCGACGGGCAGGAAGATCGGCGGTTCGACAAAGAGACAGAGAGA GGGAGGGGGGCGGCATTGTTCAGGGGGTTAGAACAGCGGCGGCAGGCGTA GCTGCAGCAGCTGGCGGCAGCGGCAGCGGCGGCAGTTTTGTGAAGAAAGA CGGCATTGGGGGCAGGCTTACGCAGCGTCGTCCTTGGGAAAGAAAGGGGG TGCGGCCGCTTACCACGGCGGCAGCTACAGCCGACTGGGGCTGACCGTTG ACCGGTTCGGATTCAGGTTCGGTTCCAGCAGGGGAATTCCGAGGAATGCA CGAAGGGGCAAAAAAGAATATCGTCGAAATTGTATTGAGGATGGGGTGGC GAAGGGGGGTTGCGGGTTTCCGCAGCGGTGGCGACAAACTGGCGGATGCT CCACAGGTCGCTAGCAGCAGCAACTGCCGCAGGAGCATCGAAATGGTTGC GTGGCGGCGGCGGCGGCGACAACGCGGGCGGTGTCCGAGAAGTCGGATCT CTTTGAACGCCCGAACCAATGCCCAAATAATTTCGTTTGCGGCATCACAA GTGGCGGCAGCGGTTGTAGTAGAGACGAAGCATTCTTGCGAGCATGTTTC ACATAGGTTTCTTTCTTCTTCCATCCCGGAAGCACGGCCGCGGCAAAATC CTTTTGAGTGCAGGCCAAAACCGTAAACCGAACACGCATTTCCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1174:4019..7713-

>mRNA_P-wetherbeei_contig1174.3.1 ID=mRNA_P-wetherbeei_contig1174.3.1|Name=mRNA_P-wetherbeei_contig1174.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1329bp|location=Sequence derived from alignment at P-wetherbeei_contig1174:4019..7713- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGGAGCAGCGAGAAGGGATCACATGAGGAGACGACGGTCGATGCA
CACAAGAGTGCTCGTCGGCCTGGGGCTTTTGGCGTGTGGCGCGGCCTTCG
CGCCGCCCGTGAGCACGCCTTTGGCGGCTGCGCGCCAAAGAGCCGCAGCT
GCGGCGGCGACCACGGAAACGATAGAGCGGAGACCACGCAGGACAGTTCC
GCGGAGGCAACAGACGGACGAGGCGCAGCAACGAAAACAACCCGTGCTCG
GCAACGCCGCGATCCCGTCAACCTCATGGGATAGCGAGCGACCAACATCA
CAAGGGCGGAAAGCAGCGCGGATGGCGGGCAAACAGGGCCACTTCGACGA
GACGCCCGACCTGCTGACGGCGCAGGATGAAATCAAGCTGGGGAAGCTCG
TGCAGAAGCGCATCGGGTGGGATGGCGAGCGGACGAAGCTAGAGGCTGCG
CTTGGCCGGCCGCCGTCGCTCGAGGAATGGTCGCAGGCCTGCGGCCTCGA
TGGTGGCGCCGAGGGCATGCGGCGGCGCGTCGCGCGCACCGACGCAGCCA
AGGAGCGCATGGTCTCGGCCAACCTGCGGCTGGTGATGAGCATCGCGCGG
CGGTACAAGTTTTCCGTGCAGTCGAAGCTGCCGCTGGGTGACCTGATCCA
GGAGGGAACTTTCGGGCTTGTCAAGGCCGTGGAACGGTTCGACCCGGACA
AGGGCTTCCGCTTCTCGACCTACGCCAGCTGGTGGGTACGTCAGACGGTG
ATGCGCGCTATCGCGGAGCAGTCGCGGACCATCCGTCTCCCGTCGCATGT
CCACGACCTGCTGCACCACATCCGGCGCGCGGGCCGTGAGCTGCAGGCCG
AGCTCGGCCGCCCGGCGACGCTCTCCGAGCTGGCCGGACGCATGGACATG
GCGGAGGAGCGCCTCTCCTATTACATGGAGAAGGACCGGGCCGAGCCCGT
GTCGCTGTCAACGACCGTCGGCGGCGCGTCCGCCTCCAAGCCCGGCGGCG
GCGGCGGAAGCTCCGGCGGCGGTGGCACGTCGCTGACGATCGGGGAGCGA
GTGACGGACGCCGGGCAGTCGCCGCAGGACTTTACAGAGAAGCGGCTGCT
ACAGGATGACGTCGAACGGCTGCTGTGGAAGCTGTCGCCGCGCGAGCGGG
CGGTCCTGCGCATGCGGTACGGCCTCGACGACGGCCGAGCCATGACCCTC
AAGCAGGTCGGGGAGCGGTTCAACGTGACGCGCGAACGCATCCGGCAAAT
CGAGGCGCGGGCGTTGCATAAGTTGCGGCAGCCGTTCATCAGCTGCAGCG
TCCGGCAGCACAGCGTCGAGGTCTTATAG
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