mRNA_P-wetherbeei_contig1173.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1173.1.1
Unique NamemRNA_P-wetherbeei_contig1173.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1173.1.1 vs. uniprot
Match: D7FQQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ4_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.700e-33
Identity = 61/126 (48.41%), Postives = 77/126 (61.11%), Query Frame = 1 
Query:    1 LRWEHRGDELRRMIATGTPCNAPVLPGHRWYIICAKWFDGWLRFVASTRRMAPPGPVNNAWMLRPASDGCGCSGAAAAALASDQDGDYRRVTPAVWKLFMELYGGGPQIYVEGPPIDDTSRWKILY 378
            L+WEHR  EL  + A G P  +P+ PG RW+I+ A+W D WL F  S RRM+PPGP++N+WML          G   A     Q GDYRRV    W   M LYGGGP IYV+GPP++D SRW + +
Sbjct:  406 LQWEHRVQELAAVTA-GKPITSPMQPGERWFIVDARWMDHWLEFCTSKRRMSPPGPIDNSWMLHSEKRHIPYEGLTLAM--GKQAGDYRRVGMECWDQLMRLYGGGPAIYVDGPPVEDLSRWVVRF 528
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BLAST of mRNA_P-wetherbeei_contig1173.1.1 vs. uniprot
Match: A0A6H5K5V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5V0_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.810e-33
Identity = 61/126 (48.41%), Postives = 77/126 (61.11%), Query Frame = 1 
Query:    1 LRWEHRGDELRRMIATGTPCNAPVLPGHRWYIICAKWFDGWLRFVASTRRMAPPGPVNNAWMLRPASDGCGCSGAAAAALASDQDGDYRRVTPAVWKLFMELYGGGPQIYVEGPPIDDTSRWKILY 378
            L+WEHR  EL  + A G P  +P+ PG RW+I+ A+W D WL F  S RRM+PPGP++N+WML          G   A     Q GDYRRV    W   M LYGGGP IYV+GPP++D SRW + +
Sbjct:  595 LQWEHRVQELAAVTA-GKPITSPMQPGERWFIVDARWMDHWLEFCTSKRRMSPPGPIDNSWMLHSEKRHIPYEGLTLAM--GKQAGDYRRVGAECWDQLMRLYGGGPAIYVDGPPVEDLSRWVVRF 717
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1173.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQQ4_ECTSI1.700e-3348.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5V0_9PHAE1.810e-3348.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1173contigP-wetherbeei_contig1173:410..886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog112098.XP_008615555.1
PFAMsC2,DUSP
Model size378
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.34e-09
EggNOG OGs28PQW@1|root,2QWD5@2759|Eukaryota
DescriptionDUSP domain
Cds size378
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185924.3088229-CDS-P-wetherbeei_contig1173:409..6321683185924.3088229-CDS-P-wetherbeei_contig1173:409..632Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1173 410..632 +
1683185924.3177366-CDS-P-wetherbeei_contig1173:690..7101683185924.3177366-CDS-P-wetherbeei_contig1173:690..710Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1173 691..710 +
1683185924.325933-CDS-P-wetherbeei_contig1173:751..8861683185924.325933-CDS-P-wetherbeei_contig1173:751..886Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1173 752..886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1173.1.1prot_P-wetherbeei_contig1173.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1173 410..886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1173.1.1

>prot_P-wetherbeei_contig1173.1.1 ID=prot_P-wetherbeei_contig1173.1.1|Name=mRNA_P-wetherbeei_contig1173.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
LRWEHRGDELRRMIATGTPCNAPVLPGHRWYIICAKWFDGWLRFVASTRR
MAPPGPVNNAWMLRPASDGCGCSGAAAAALASDQDGDYRRVTPAVWKLFM
ELYGGGPQIYVEGPPIDDTSRWKILY
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mRNA from alignment at P-wetherbeei_contig1173:410..886+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1173.1.1 ID=mRNA_P-wetherbeei_contig1173.1.1|Name=mRNA_P-wetherbeei_contig1173.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig1173:410..886+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCGCTGGGAGCACCGCGGGGACGAACTCCGGCGGATGATTGCCACGGG
GACGCCGTGCAACGCACCAGTACTGCCTGGCCACCGCTGGTACATCATCT
GCGCCAAGTGGTTCGACGGCTGGCTGCGCTTCGTTGCCAGCACGCGCCGC
ATGGCGCCGCCGGGCCCCGTCAACAACGCCTGGATGCTGCGGCCCGCTTC
CGATGGTTGCGGATGCAGTGGCGGTGGCGGCGGCGGCGGCGACGACGGCG
GCGGCGGCAGCAACGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCACTCGC
GGTGATGGTGTCACGCCACACGCCGACCTGCGGTTCGCCGAGAGCGATCA
GGACGGGGACTACCGGCGGGTGACGCCTGCCGTCTGGAAGCTCTTCATGG
AGCTGTACGGCGGCGGGCCCCAAATCTACGTCGAAGGGCCGCCGATCGAC
GACACCAGTCGCTGGAAAATCCTTTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1173:410..886+

>mRNA_P-wetherbeei_contig1173.1.1 ID=mRNA_P-wetherbeei_contig1173.1.1|Name=mRNA_P-wetherbeei_contig1173.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig1173:410..886+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCGCTGGGAGCACCGCGGGGACGAACTCCGGCGGATGATTGCCACGGG
GACGCCGTGCAACGCACCAGTACTGCCTGGCCACCGCTGGTACATCATCT
GCGCCAAGTGGTTCGACGGCTGGCTGCGCTTCGTTGCCAGCACGCGCCGC
ATGGCGCCGCCGGGCCCCGTCAACAACGCCTGGATGCTGCGGCCCGCTTC
CGATGGTTGCGGATGCAGTGGCGCGGCGGCGGCGGCACTCGCGAGCGATC
AGGACGGGGACTACCGGCGGGTGACGCCTGCCGTCTGGAAGCTCTTCATG
GAGCTGTACGGCGGCGGGCCCCAAATCTACGTCGAAGGGCCGCCGATCGA
CGACACCAGTCGCTGGAAAATCCTTTAC
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