mRNA_P-wetherbeei_contig11724.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11724.1.1
Unique NamemRNA_P-wetherbeei_contig11724.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11724.1.1 vs. uniprot
Match: A0A836C8H1_9STRA (Surface protein Sur1 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8H1_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.110e-34
Identity = 56/98 (57.14%), Postives = 69/98 (70.41%), Query Frame = 1
Query:    1 QVWLGSNLPERFQVLRESWMRCMPAWEVRLWSDADVAALGLENQAAFDAAPNWGEKSDICRYEILWRLGGFYADVDFICLRSFEALHSEADFCAGTVD 294
            QVWLG ++P +F+ LRESW +    WE+RLW   DV   GLEN+AAFDAA N+GEKSDI RYEIL R GG Y DVDF+CL+S + +    DF AG  +
Sbjct:   68 QVWLGGSMPSKFRDLRESWAKLHDGWELRLWGGGDVEDFGLENRAAFDAATNYGEKSDIFRYEILHRHGGIYVDVDFLCLQSLQVMADNLDFFAGLAN 165          
BLAST of mRNA_P-wetherbeei_contig11724.1.1 vs. uniprot
Match: D7FIJ5_ECTSI (Surface protein Sur1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ5_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.510e-31
Identity = 59/111 (53.15%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    4 VWLGSNLPERFQVLRESWMRCMPA-----------------WEVRLWSDADVAALGLENQAAFDAAPNWGEKSDICRYEILWRLGGFYADVDFICLRSFEALHSEADFCAG 285
            +WLGS LPE F  LRESW+                      WEVRLW+DADV A GLEN+ A+DAA N+G+KSDI RYE+L R GG Y DVDF+CL SF+ LH   +F AG
Sbjct:   46 IWLGSPLPEAFARLRESWLARHSGLSSQGRGPERSNGGSTPWEVRLWTDADVDAFGLENRGAYDAAQNFGQKSDILRYEVLLRHGGLYVDVDFLCLGSFDDLHKRYEFYAG 156          
BLAST of mRNA_P-wetherbeei_contig11724.1.1 vs. uniprot
Match: A0A6H5JQP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQP8_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.460e-27
Identity = 57/111 (51.35%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    4 VWLGSNLPERFQVLRESWMR-----------------CMPAWEVRLWSDADVAALGLENQAAFDAAPNWGEKSDICRYEILWRLGGFYADVDFICLRSFEALHSEADFCAG 285
            +WLGS LP  F  L ESW+                      WEVRLW+DAD+ A GLEN+ A+DAA N+G+KSDI RYEIL R GG Y DVDF+CL SF+ LH   +F AG
Sbjct:  101 IWLGSPLPAAFARLCESWLARHSGPSSQGLGHEMSKSSSTPWEVRLWTDADINAFGLENRGAYDAAQNFGQKSDILRYEILLRHGGLYVDVDFLCLSSFDDLHRRYEFYAG 211          
BLAST of mRNA_P-wetherbeei_contig11724.1.1 vs. uniprot
Match: A0A7S1CD16_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CD16_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.690e-26
Identity = 52/97 (53.61%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    4 VWLGSNLPERFQVLRESWMRCMP---AWEVRLWSDADVAALGLENQAAFDAAPNWGEKSDICRYEILWRLGGFYADVDFICLRSFEALHSEADFCAG 285
            VWLG  LP RF  LR +W    P    W+  LW DA+VAAL L N+AAFDAA N+GEKSDI RYE+LW  GG Y DVD   +R    LH   D   G
Sbjct:   37 VWLGGRLPRRFARLRATWTTTHPPSRGWQHVLWGDAEVAALTLRNRAAFDAAGNYGEKSDILRYELLWAFGGVYVDVDMQAVRPLTPLHRVCDLYVG 133          
BLAST of mRNA_P-wetherbeei_contig11724.1.1 vs. uniprot
Match: X1Q535_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1Q535_9ZZZZ)

HSP 1 Score: 104 bits (260), Expect = 3.230e-26
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    1 QVWLGSNLPERFQVLRESWMRCMPAWEVRLWSDADVAALGLENQAAFDAAPNWGEKSDICRYEILWRLGGFYADVDFICLRSFEALH 261
            Q+WLGS  PE++   + +W    P WE +LW++ ++   GL N+AA+D + N+G+KSDI RYEIL+R+GG Y D DF C  +F+  H
Sbjct:   93 QIWLGSPFPEKYAYFQSTWQLHHPDWEYKLWTEKEIEEFGLTNKAAYDESTNYGQKSDIARYEILYRIGGLYVDTDFECFNNFDLFH 179          
BLAST of mRNA_P-wetherbeei_contig11724.1.1 vs. uniprot
Match: A0A7V1MPV4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Dependentiae bacterium TaxID=2030827 RepID=A0A7V1MPV4_9BACT)

HSP 1 Score: 105 bits (261), Expect = 4.160e-25
Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 1
Query:    1 QVWLGSN-LPERFQVLRESWMRCMPAWEVRLWSDADVAALGLENQAAFDAAPNWGEKSDICRYEILWRLGGFYADVDFICLRSFEALHSEADFCAG 285
            Q+W+G +  P + +VL+++W +  P W+ +LW+DADV  L L N+AA++ A N+G+KSDI RYEIL++ GG Y D DF C R+F+  H   DF  G
Sbjct:   83 QIWVGPHPFPNKCKVLQKTWKKHHPDWKYKLWTDADVKELDLINEAAYEKAKNYGQKSDILRYEILYKYGGLYVDTDFECFRAFDIFHHCLDFYTG 178          
BLAST of mRNA_P-wetherbeei_contig11724.1.1 vs. uniprot
Match: A0A2D4BPS1_PYTIN (Putative endo-1,3-1,4-beta glucanase (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPS1_PYTIN)

HSP 1 Score: 107 bits (267), Expect = 4.640e-25
Identity = 53/95 (55.79%), Postives = 62/95 (65.26%), Query Frame = 1
Query:    4 VWLGSN-LPERFQVLRESWMRCMPAWEVRLWSDADVAALGLENQAAFDAAPNWGEKSDICRYEILWRLGGFYADVDFICLRSFEALHSEADFCAG 285
            +WLG   +P       ESW +  P+WE RLW D DV+ L L NQAAFDAA N+GEKSDI RYEIL R GG Y DVD  CL +F+AL +  DF  G
Sbjct:   18 IWLGPRPIPAVCLAWMESWKKMHPSWEHRLWRDTDVSELTLRNQAAFDAASNFGEKSDIARYEILERFGGVYVDVDVECLCAFDALVARFDFIVG 112          
BLAST of mRNA_P-wetherbeei_contig11724.1.1 vs. uniprot
Match: A0A4R4BPI9_9SPIR (Uncharacterized protein n=1 Tax=Treponema sp. J25 TaxID=2094121 RepID=A0A4R4BPI9_9SPIR)

HSP 1 Score: 103 bits (258), Expect = 5.640e-25
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 1
Query:    1 QVWLGSNLPERFQVLRESWMRCMPAWEVRLWSDADVAALGLENQAAFDAAPNWGEKSDICRYEILWRLGGFYADVDFICLRSFEALHSEADFCAG 285
            Q+WLGS +PE ++   +SW    P WE  LW +  +  LGL+N+ A++ +P++G KSDI RYEIL+R GG Y D DF CL++FE +     F AG
Sbjct:   51 QIWLGSPVPEAYKTFMQSWKLYHPDWEYILWDEEKIKKLGLKNKIAYNLSPSYGIKSDIARYEILYRFGGIYVDTDFECLKNFEPIIEGCGFFAG 145          
BLAST of mRNA_P-wetherbeei_contig11724.1.1 vs. uniprot
Match: A0A485KRR7_9STRA (Aste57867_10970 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KRR7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.180e-23
Identity = 48/94 (51.06%), Postives = 60/94 (63.83%), Query Frame = 1
Query:    1 QVWLGSNLPERFQVLRESWMRCMPAWEVRLWSDADVAALGLENQAAFDAAPNWGEKSDICRYEILWRLGGFYADVDFICLRSFEALHSEADFCA 282
            Q+WLG    + F+   +SW    P WE  LW++ D+    L NQ AFDAA N+GEKSDI RYEIL R GG Y D+DF CLR  +A+H E D C+
Sbjct:   29 QIWLGPAPLDAFREWMKSWGALHPDWEYTLWTERDLGQWTLTNQMAFDAATNYGEKSDIWRYEILERHGGVYVDIDFECLRPLDAMH-EHDGCS 121          
BLAST of mRNA_P-wetherbeei_contig11724.1.1 vs. uniprot
Match: A0A838E298_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Dependentiae bacterium TaxID=2030827 RepID=A0A838E298_9BACT)

HSP 1 Score: 101 bits (251), Expect = 1.210e-23
Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:    1 QVWLGSNLPER-FQVLRESWMRCMPAWEVRLWSDADVAALGLENQAAFDAAPNWGEKSDICRYEILWRLGGFYADVDFICLRSFEALHSEADFCAGTVDP 297
            Q+WLG   P   F+  +ES     P WE +LW+DAD+ +L LENQ  +D + N+GEKSDI RYEIL+R GG YADVD I LR F+ L S+ D   G ++P
Sbjct:   90 QIWLGPKTPPAIFKESQESLKNYHPTWEYKLWTDADIPSLQLENQNFYDLSDNYGEKSDILRYEILYRFGGVYADVDLIALRPFDVL-SQYDLWTG-IEP 187          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11724.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8H1_9STRA2.110e-3457.14Surface protein Sur1 (Fragment) n=1 Tax=Tribonema ... [more]
D7FIJ5_ECTSI1.510e-3153.15Surface protein Sur1 n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JQP8_9PHAE1.460e-2751.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1CD16_9STRA1.690e-2653.61Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
X1Q535_9ZZZZ3.230e-2645.98Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A7V1MPV4_9BACT4.160e-2546.88Uncharacterized protein n=1 Tax=Candidatus Depende... [more]
A0A2D4BPS1_PYTIN4.640e-2555.79Putative endo-1,3-1,4-beta glucanase (Fragment) n=... [more]
A0A4R4BPI9_9SPIR5.640e-2546.32Uncharacterized protein n=1 Tax=Treponema sp. J25 ... [more]
A0A485KRR7_9STRA1.180e-2351.06Aste57867_10970 protein n=1 Tax=Aphanomyces stella... [more]
A0A838E298_9BACT1.210e-2351.00Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11724contigP-wetherbeei_contig11724:1310..1997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIJ5
PFAMsGly_transf_sug
Model size315
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.48e-32
EggNOG OGsCOG3774@1|root,2S4FC@2759|Eukaryota
DescriptionGlycosyltransferase sugar-binding region containing DXD motif
Cds size315
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185924.0669923-CDS-P-wetherbeei_contig11724:1309..14981683185924.0669923-CDS-P-wetherbeei_contig11724:1309..1498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11724 1310..1498 +
1683185924.0750954-CDS-P-wetherbeei_contig11724:1871..19971683185924.0750954-CDS-P-wetherbeei_contig11724:1871..1997Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11724 1872..1997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11724.1.1prot_P-wetherbeei_contig11724.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11724 1310..1997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11724.1.1

>prot_P-wetherbeei_contig11724.1.1 ID=prot_P-wetherbeei_contig11724.1.1|Name=mRNA_P-wetherbeei_contig11724.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
QVWLGSNLPERFQVLRESWMRCMPAWEVRLWSDADVAALGLENQAAFDAA
PNWGEKSDICRYEILWRLGGFYADVDFICLRSFEALHSEADFCAGTVDPC
GRDSE
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mRNA from alignment at P-wetherbeei_contig11724:1310..1997+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11724.1.1 ID=mRNA_P-wetherbeei_contig11724.1.1|Name=mRNA_P-wetherbeei_contig11724.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=688bp|location=Sequence derived from alignment at P-wetherbeei_contig11724:1310..1997+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTCTGGCTGGGTTCCAATTTACCTGAACGCTTCCAAGTCTTGCGCGA ATCTTGGATGCGTTGCATGCCCGCATGGGAGGTCCGCCTGTGGAGCGACG CCGACGTTGCCGCGCTCGGGTTGGAGAACCAGGCGGCCTTCGACGCGGCG CCCAACTGGGGCGAAAAATCGGACATTTGCAGATACGAGGTGCTTGATTC CGATGGTTGGTTGTGGCAACGTTTCGAGAGGAGGTTTACCGAAGTGGTAT GCATTCCGGAGCCGATGGGTTCTCTCTCTTCGAGCTCTGTTCTCTTCTTT GTTCGGGAGCTGCAAACGCTTAGAGCAGTTCCGGCTGCGTGCTCTGATAC CATATAGCATGCGTTACCGAGAATTGGACTTAATCCTGAGCAAATCATGC AAATTTCTTCACTATTAACGGTGTTCCAATGCTTCGGACCTTTTCTTGAT CCGCTTCTTTGTCTTTTCGGTATGTTGGAGGGTACGGTGTGGACGTGATT GGTTCCAAGGTTTGTTTGGTCAGCCCCTCCTTCCTCCTATCGCTTCTGGC TGCCGGCGTTAGATTCTGTGGCGCTTGGGAGGATTCTACGCGGACGTAGA CTTCATTTGCCTGCGCAGCTTCGAAGCGCTCCACTCCGAGGCCGATTTCT GCGCAGGTACAGTGGATCCGTGTGGTCGAGATAGTGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11724:1310..1997+

>mRNA_P-wetherbeei_contig11724.1.1 ID=mRNA_P-wetherbeei_contig11724.1.1|Name=mRNA_P-wetherbeei_contig11724.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig11724:1310..1997+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTCTGGCTGGGTTCCAATTTACCTGAACGCTTCCAAGTCTTGCGCGA
ATCTTGGATGCGTTGCATGCCCGCATGGGAGGTCCGCCTGTGGAGCGACG
CCGACGTTGCCGCGCTCGGGTTGGAGAACCAGGCGGCCTTCGACGCGGCG
CCCAACTGGGGCGAAAAATCGGACATTTGCAGATACGAGATTCTGTGGCG
CTTGGGAGGATTCTACGCGGACGTAGACTTCATTTGCCTGCGCAGCTTCG
AAGCGCTCCACTCCGAGGCCGATTTCTGCGCAGGTACAGTGGATCCGTGT
GGTCGAGATAGTGAG
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