mRNA_P-wetherbeei_contig11720.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11720.2.1
Unique NamemRNA_P-wetherbeei_contig11720.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11720.2.1 vs. uniprot
Match: UPI001BAA0D15 (transglycosylase SLT domain-containing protein n=1 Tax=Saccharopolyspora erythraea TaxID=1836 RepID=UPI001BAA0D15)

HSP 1 Score: 62.4 bits (150), Expect = 3.610e-10
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    4 VAEVARQKGVDPATAVASMLAESGGDARKLGDYNKHHQATSFGLFQLHKGGELGSLSPQQAFNPHTNA 207
            +  VA+Q GVDP  A+A+   ES  + R +GD       TSFGL+QLH+GG+LG+ +P+ AFNP  NA
Sbjct:    8 ITSVAQQHGVDPILALATAYQESKLNPRAVGD-----NGTSFGLYQLHRGGQLGNHTPEWAFNPANNA 70
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BLAST of mRNA_P-wetherbeei_contig11720.2.1 vs. uniprot
Match: A0A3S0CYM9_9BACT (SLT domain-containing protein n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A3S0CYM9_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 5.670e-10
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 IVAEVARQKGVDPATAVASMLAESGGDARKLGDYNKHHQATSFGLFQLHKGGELGSLSPQQAFNPHTNAE 210
            +VAE+A++ GVDPATAVA ML ESGG+ + +GD N H    S GLFQL+  GE   +S  +  +P  NAE
Sbjct:    1 MVAEIAKKDGVDPATAVADMLVESGGNNKAIGD-NGH----SVGLFQLNDQGEGAGMSVAERQDPTRNAE 65
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BLAST of mRNA_P-wetherbeei_contig11720.2.1 vs. uniprot
Match: A0A3S0EZ64_9BACT (Uncharacterized protein n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A3S0EZ64_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 9.460e-9
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:    4 VAEVARQKGVDPATAVASMLAESGGDARKLGDYNKHHQATSFGLFQLHKGGELGSLSPQQAFNPHTNAE 210
            V EVA++KG+DP  AVA+ML ESGGD + +GD        S GLFQL+  GE   +S  Q  +P  NAE
Sbjct:  273 VMEVAKEKGIDPTLAVATMLVESGGDNKAVGDGGH-----SIGLFQLNDNGEGSGMSVAQREDPRLNAE 336
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BLAST of mRNA_P-wetherbeei_contig11720.2.1 vs. uniprot
Match: UPI00082D4071 (transglycosylase SLT domain-containing protein n=1 Tax=Alicyclobacillus shizuokensis TaxID=392014 RepID=UPI00082D4071)

HSP 1 Score: 53.5 bits (127), Expect = 1.010e-6
Identity = 34/71 (47.89%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:    1 IVAEVARQKGVDPATAVASMLAESGGDARKLGDYNKHHQATSFGLFQLHKGGELGS-LSPQQAFNPHTNAE 210
            IV++VA   G+ P  A+  M  ESGG+   +GD       TSFGLFQLHKGG  G   S  Q  +P TNAE
Sbjct:    8 IVSQVALANGLPPWVALDIMAVESGGNPNAVGD-----NGTSFGLFQLHKGGGQGDGYSVSQLLDPLTNAE 73
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BLAST of mRNA_P-wetherbeei_contig11720.2.1 vs. uniprot
Match: UPI000834460F (transglycosylase SLT domain-containing protein n=1 Tax=Alicyclobacillus kakegawensis TaxID=392012 RepID=UPI000834460F)

HSP 1 Score: 51.6 bits (122), Expect = 5.070e-6
Identity = 33/71 (46.48%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:    1 IVAEVARQKGVDPATAVASMLAESGGDARKLGDYNKHHQATSFGLFQLHKGGELGS-LSPQQAFNPHTNAE 210
            IV++VA   G+ P  A+  M  ESGG+   +GD       TSFGLFQLHKGG  G   S  Q  +P TNA+
Sbjct:    8 IVSQVALAYGLPPWVALDIMAVESGGNPNAVGD-----NGTSFGLFQLHKGGGQGDGYSVSQLLDPLTNAQ 73
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11720.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001BAA0D153.610e-1048.53transglycosylase SLT domain-containing protein n=1... [more]
A0A3S0CYM9_9BACT5.670e-1051.43SLT domain-containing protein n=1 Tax=Candidatus M... [more]
A0A3S0EZ64_9BACT9.460e-949.28Uncharacterized protein n=1 Tax=Candidatus Melaina... [more]
UPI00082D40711.010e-647.89transglycosylase SLT domain-containing protein n=1... [more]
UPI000834460F5.070e-646.48transglycosylase SLT domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11720contigP-wetherbeei_contig11720:1894..2103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size210
Hectar predicted targeting categoryother localisation
Exons1
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185923.9620507-CDS-P-wetherbeei_contig11720:1893..21031683185923.9620507-CDS-P-wetherbeei_contig11720:1893..2103Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11720 1894..2103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11720.2.1prot_P-wetherbeei_contig11720.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11720 1894..2103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11720.2.1

>prot_P-wetherbeei_contig11720.2.1 ID=prot_P-wetherbeei_contig11720.2.1|Name=mRNA_P-wetherbeei_contig11720.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=70bp
IVAEVARQKGVDPATAVASMLAESGGDARKLGDYNKHHQATSFGLFQLHK
GGELGSLSPQQAFNPHTNAE
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mRNA from alignment at P-wetherbeei_contig11720:1894..2103+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11720.2.1 ID=mRNA_P-wetherbeei_contig11720.2.1|Name=mRNA_P-wetherbeei_contig11720.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig11720:1894..2103+ (Phaeothamnion wetherbeei SAG_119_79)
ATAGTCGCCGAGGTAGCTCGCCAAAAAGGCGTGGATCCCGCCACTGCTGT
GGCCTCGATGCTCGCCGAAAGCGGTGGTGACGCCCGGAAACTAGGGGACT
ACAACAAACACCATCAGGCCACGAGCTTTGGGCTCTTCCAACTCCATAAG
GGAGGGGAGCTCGGCTCCCTTTCTCCCCAGCAGGCTTTCAATCCACATAC
GAATGCCGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11720:1894..2103+

>mRNA_P-wetherbeei_contig11720.2.1 ID=mRNA_P-wetherbeei_contig11720.2.1|Name=mRNA_P-wetherbeei_contig11720.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig11720:1894..2103+ (Phaeothamnion wetherbeei SAG_119_79)
ATAGTCGCCGAGGTAGCTCGCCAAAAAGGCGTGGATCCCGCCACTGCTGT
GGCCTCGATGCTCGCCGAAAGCGGTGGTGACGCCCGGAAACTAGGGGACT
ACAACAAACACCATCAGGCCACGAGCTTTGGGCTCTTCCAACTCCATAAG
GGAGGGGAGCTCGGCTCCCTTTCTCCCCAGCAGGCTTTCAATCCACATAC
GAATGCCGAA
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