mRNA_P-wetherbeei_contig11712.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11712.1.1
Unique NamemRNA_P-wetherbeei_contig11712.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig11712.1.1 vs. uniprot
Match: A0A7S3UWX7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWX7_HETAK)

HSP 1 Score: 168 bits (426), Expect = 1.350e-51
Identity = 82/105 (78.10%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:   31 MQIWVLREYLEVEFAGLRN-LPFAFDFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLQNVYKRVLPAMGGYLTQPGGRVNLRNVDIILAEVGEIEDEVFR 342
            +++W LREYL  EF  L + LPF +DFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGALDFL NVYKR LP MGGYLT PGG VNL +VD IL EVG IEDEVFR
Sbjct:   16 LELWTLREYLRAEFQCLESALPFEYDFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLFNVYKRCLPGMGGYLTNPGGEVNLAHVDQILREVGAIEDEVFR 120
[Close]
BLAST of mRNA_P-wetherbeei_contig11712.1.1 vs. uniprot
Match: A0A4D9CT15_9STRA (5'-3' exoribonuclease n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CT15_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.210e-49
Identity = 89/115 (77.39%), Postives = 96/115 (83.48%), Query Frame = 1 
Query:    1 LKP-RPSHVPTMQIWVLREYLEVEFAGLRNLPFAFDFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLQNVYKRVLPAMGGYLTQPGGRVNLRNVDIILAEVGEIEDEVFR 342
            LKP +  H+PT     LREYLE EF  LR+LPF ++FERVVDDFVFLCFFVGNDFLPHLPSLDIRDGA+DFL NVYKRVLPAMG YLT PGG VNL  VDIILAEVG +EDEVFR
Sbjct:  297 LKPFQMLHIPT-----LREYLEEEFRSLRDLPFGYNFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGAIDFLLNVYKRVLPAMGDYLTAPGGTVNLEQVDIILAEVGRVEDEVFR 406
[Close]
BLAST of mRNA_P-wetherbeei_contig11712.1.1 vs. uniprot
Match: W7TMF7_9STRA (5'-3' exoribonuclease n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMF7_9STRA)

HSP 1 Score: 176 bits (447), Expect = 5.070e-49
Identity = 89/115 (77.39%), Postives = 95/115 (82.61%), Query Frame = 1 
Query:    1 LKP-RPSHVPTMQIWVLREYLEVEFAGLRNLPFAFDFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLQNVYKRVLPAMGGYLTQPGGRVNLRNVDIILAEVGEIEDEVFR 342
            LKP +  H+PT     LREYLE EF  LR LPF ++FERVVDDFVFLCFFVGNDFLPHLPSLDIRDGA+DFL NVYKRVLPAMG YLT PGG VNL  VDIILAEVG +EDEVFR
Sbjct:  297 LKPFQMLHIPT-----LREYLEEEFRSLRGLPFGYNFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGAIDFLLNVYKRVLPAMGDYLTAPGGTVNLEQVDIILAEVGRVEDEVFR 406
[Close]
BLAST of mRNA_P-wetherbeei_contig11712.1.1 vs. uniprot
Match: A0A7S2HV30_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HV30_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.930e-45
Identity = 79/105 (75.24%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:   31 MQIWVLREYLEVEFAGLRNL-PFAFDFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLQNVYKRVLPAMGGYLTQPGGRVNLRNVDIILAEVGEIEDEVFR 342
            ++I  LREYL+ EF  L  L PF +DFERVVDDFVFLCFFVGNDFLPHLP+LDIRDGA+DFL NVYKR+LP +G YLT+PGG VNL NVD++LAEVG IEDEVFR
Sbjct:  284 LEISTLREYLQAEFGTLETLLPFEWDFERVVDDFVFLCFFVGNDFLPHLPTLDIRDGAIDFLYNVYKRILPTLGDYLTKPGGVVNLANVDVVLAEVGAIEDEVFR 388
[Close]
BLAST of mRNA_P-wetherbeei_contig11712.1.1 vs. uniprot
Match: A0A7S2V2V3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2V3_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.090e-44
Identity = 75/105 (71.43%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:   31 MQIWVLREYLEVEFAGL-RNLPFAFDFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLQNVYKRVLPAMGGYLTQPGGRVNLRNVDIILAEVGEIEDEVFR 342
            +Q+ VLR YL  EF  L   LPF ++FER +DDFVF+CFFVGNDFLPHLPSLDIRDGALD+L  VYKR LPAMGGYLT  GG V L +VD+IL EVG IEDEVFR
Sbjct:  100 LQVAVLRHYLRNEFKVLGETLPFPYEFERTIDDFVFMCFFVGNDFLPHLPSLDIRDGALDYLLAVYKRALPAMGGYLTNEGGEVVLEHVDVILKEVGSIEDEVFR 204
[Close]
BLAST of mRNA_P-wetherbeei_contig11712.1.1 vs. uniprot
Match: D7G4F2_ECTSI (5'-3' exoribonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F2_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 2.090e-44
Identity = 77/107 (71.96%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:   31 MQIWVLREYLEVEFAGLR---NLPFAFDFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLQNVYKRVLPAMGGYLTQPGGRVNLRNVDIILAEVGEIEDEVFR 342
            +Q+W LREYLE EF  L     +PF +DFERVVDDFVFLCFFVGNDFLPHLPSL IRDGALD+L NVYKRV+ ++G YLT  GGRVNL+ VD+I++EVGEIEDEVF+
Sbjct:  306 LQLWTLREYLENEFKELEAPGRVPFGYDFERVVDDFVFLCFFVGNDFLPHLPSLGIRDGALDYLFNVYKRVISSLGDYLTASGGRVNLKQVDVIMSEVGEIEDEVFK 412
[Close]
BLAST of mRNA_P-wetherbeei_contig11712.1.1 vs. uniprot
Match: A0A6H5JF35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF35_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 4.940e-44
Identity = 77/107 (71.96%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:   31 MQIWVLREYLEVEFAGLR---NLPFAFDFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLQNVYKRVLPAMGGYLTQPGGRVNLRNVDIILAEVGEIEDEVFR 342
            +Q+W LREYLE EF  L     +PF +DFERVVDDFVFLCFFVGNDFLPHLPSL IRDGALD+L NVYKRV+ ++G YLT  GGRVNL+ VD+I++EVGEIEDEVF+
Sbjct:  306 LQLWTLREYLENEFKELEAPGRVPFGYDFERVVDDFVFLCFFVGNDFLPHLPSLGIRDGALDYLFNVYKRVISSLGDYLTASGGRVNLKQVDVIMSEVGEIEDEVFK 412
[Close]
BLAST of mRNA_P-wetherbeei_contig11712.1.1 vs. uniprot
Match: A0A7S1UB78_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UB78_9STRA)

HSP 1 Score: 158 bits (399), Expect = 6.400e-44
Identity = 80/118 (67.80%), Postives = 94/118 (79.66%), Query Frame = 1 
Query:   16 SHVPTMQ------IWVLREYLEVEFAGLRN---LPFAFDFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLQNVYKRVLPAMGGYLTQPGGRVNLRNVDIILAEVGEIEDEVFR 342
            SH+ TM+      + VLREYL +EF  L     LPF +DFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGAL FL + Y+R+LPA+GG+LT  GG VNLR VD+ILAEVG++EDE+FR
Sbjct:  303 SHLLTMKPLQMLRVPVLREYLRIEFQALSMPGALPFPYDFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGALLFLFDTYRRLLPAIGGFLTSEGGEVNLRGVDVILAEVGKVEDELFR 420
[Close]
BLAST of mRNA_P-wetherbeei_contig11712.1.1 vs. uniprot
Match: A0A835YKU1_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKU1_9STRA)

HSP 1 Score: 160 bits (405), Expect = 2.360e-43
Identity = 78/96 (81.25%), Postives = 85/96 (88.54%), Query Frame = 1 
Query:   58 LEVEFAGLRN-LPFAFDFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLQNVYKRVLPAMGGYLTQPGGRVNLRNVDIILAEVGEIEDEVFR 342
            L+ EFA L+  LPF +DFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLQNVY+R LPA+G YLT PGG VNLR V +I+AEVGEIEDEVFR
Sbjct: 1072 LQAEFASLQGTLPFKYDFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLQNVYRRKLPAIGDYLTLPGGEVNLRGVAVIMAEVGEIEDEVFR 1167
[Close]
BLAST of mRNA_P-wetherbeei_contig11712.1.1 vs. uniprot
Match: A0A7S1CPA5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CPA5_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.760e-42
Identity = 75/112 (66.96%), Postives = 87/112 (77.68%), Query Frame = 1 
Query:   10 RPSHVPTMQIWVLREYLEVEFAGLRN-LPFAFDFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLQNVYKRVLPAMGGYLTQPGGRVNLRNVDIILAEVGEIEDEVFR 342
            RP  +  + +WVLREYL  EFA L   LPF FD E +VDDFVF+CFFVGNDFLPHLPSLDIR+GALD L  +YKR LPA+GGYLT  G  VNL  VD++LAEVGE+E E+FR
Sbjct:  296 RPKALQFLHLWVLREYLAAEFASLEGTLPFDFDLEHIVDDFVFMCFFVGNDFLPHLPSLDIREGALDMLTELYKRALPALGGYLTD-GPEVNLSRVDVMLAEVGEMEAEIFR 406
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11712.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UWX7_HETAK1.350e-5178.10Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9CT15_9STRA2.210e-4977.395'-3' exoribonuclease n=1 Tax=Nannochloropsis sali... [more]
W7TMF7_9STRA5.070e-4977.395'-3' exoribonuclease n=2 Tax=Monodopsidaceae TaxI... [more]
A0A7S2HV30_9STRA1.930e-4575.24Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2V2V3_9STRA1.090e-4471.43Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D7G4F2_ECTSI2.090e-4471.965'-3' exoribonuclease n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JF35_9PHAE4.940e-4471.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1UB78_9STRA6.400e-4467.80Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835YKU1_9STRA2.360e-4381.25XRN 5'-3' exonuclease N-terminus-domain-containing... [more]
A0A7S1CPA5_9STRA1.760e-4266.96Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11712contigP-wetherbeei_contig11712:820..1161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G4F2
PFAMsXRN_N
Model size342
Max annot lvl2759|Eukaryota
KEGG koko:K12619
KEGG Pathwayko03008,ko03018,map03008,map03018
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.29e-45
EggNOG OGsCOG5049@1|root,KOG2044@2759|Eukaryota
Ec32 ortholog description5'-3' exoribonuclease
Ec32 orthologEc-00_007590.1
Description5'-3' exoribonuclease activity
Cds size312
COG categoryADL
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185923.5680554-UTR-P-wetherbeei_contig11712:819..8491683185923.5680554-UTR-P-wetherbeei_contig11712:819..849Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11712 820..849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185923.5788057-CDS-P-wetherbeei_contig11712:849..11611683185923.5788057-CDS-P-wetherbeei_contig11712:849..1161Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11712 850..1161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11712.1.1prot_P-wetherbeei_contig11712.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11712 850..1161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11712.1.1

>prot_P-wetherbeei_contig11712.1.1 ID=prot_P-wetherbeei_contig11712.1.1|Name=mRNA_P-wetherbeei_contig11712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MQIWVLREYLEVEFAGLRNLPFAFDFERVVDDFVFLCFFVGNDFLPHLPS
LDIRDGALDFLQNVYKRVLPAMGGYLTQPGGRVNLRNVDIILAEVGEIED
EVFR
back to top

mRNA from alignment at P-wetherbeei_contig11712:820..1161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11712.1.1 ID=mRNA_P-wetherbeei_contig11712.1.1|Name=mRNA_P-wetherbeei_contig11712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig11712:820..1161+ (Phaeothamnion wetherbeei SAG_119_79)
CTCAAACCGCGGCCATCGCACGTTCCCACCATGCAGATTTGGGTACTCCG
CGAGTACCTCGAGGTCGAATTCGCTGGCCTGCGGAACCTCCCCTTCGCCT
TCGACTTCGAGCGCGTCGTGGACGACTTCGTCTTCCTCTGCTTCTTCGTC
GGCAATGACTTTCTGCCACACCTCCCGTCGCTCGACATTCGAGACGGTGC
CCTCGACTTCCTGCAGAACGTCTACAAGCGGGTGCTGCCGGCGATGGGCG
GCTACCTGACGCAGCCCGGCGGCCGCGTCAATCTGCGGAACGTCGACATC
ATCCTGGCCGAGGTCGGCGAGATCGAGGACGAGGTCTTCCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11712:820..1161+

>mRNA_P-wetherbeei_contig11712.1.1 ID=mRNA_P-wetherbeei_contig11712.1.1|Name=mRNA_P-wetherbeei_contig11712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig11712:820..1161+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGATTTGGGTACTCCGCGAGTACCTCGAGGTCGAATTCGCTGGCCT
GCGGAACCTCCCCTTCGCCTTCGACTTCGAGCGCGTCGTGGACGACTTCG
TCTTCCTCTGCTTCTTCGTCGGCAATGACTTTCTGCCACACCTCCCGTCG
CTCGACATTCGAGACGGTGCCCTCGACTTCCTGCAGAACGTCTACAAGCG
GGTGCTGCCGGCGATGGGCGGCTACCTGACGCAGCCCGGCGGCCGCGTCA
ATCTGCGGAACGTCGACATCATCCTGGCCGAGGTCGGCGAGATCGAGGAC
GAGGTCTTCCGG
back to top