mRNA_P-wetherbeei_contig11710.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11710.1.1
Unique NamemRNA_P-wetherbeei_contig11710.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11710.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11710contigP-wetherbeei_contig11710:1623..1961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size341
Hectar predicted targeting categorysignal peptide
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185923.491219-UTR-P-wetherbeei_contig11710:1622..16341683185923.491219-UTR-P-wetherbeei_contig11710:1622..1634Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11710 1623..1634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185923.5015156-CDS-P-wetherbeei_contig11710:1634..19611683185923.5015156-CDS-P-wetherbeei_contig11710:1634..1961Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11710 1635..1961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11710.1.1prot_P-wetherbeei_contig11710.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11710 1635..1961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11710.1.1

>prot_P-wetherbeei_contig11710.1.1 ID=prot_P-wetherbeei_contig11710.1.1|Name=mRNA_P-wetherbeei_contig11710.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MEQGFLAGCVNLMCSCFLSFIFSLLFLSLTGSDDQKGGVSCARLPGSELA
SSVEEKEGDETLQICGEPCGKPGYERPSLTAPLLGDAPAPCPLPACQLHP
LLVAEIVNK
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mRNA from alignment at P-wetherbeei_contig11710:1623..1961+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11710.1.1 ID=mRNA_P-wetherbeei_contig11710.1.1|Name=mRNA_P-wetherbeei_contig11710.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig11710:1623..1961+ (Phaeothamnion wetherbeei SAG_119_79)
CAAACTGTGAAAATGGAGCAGGGCTTTCTCGCTGGGTGTGTGAACCTGAT
GTGTTCGTGCTTCCTCTCGTTTATTTTTTCTTTGCTCTTTTTATCACTTA
CGGGAAGCGATGACCAGAAAGGTGGAGTTTCATGCGCAAGGTTACCCGGT
AGCGAGCTCGCTTCGTCGGTTGAGGAGAAAGAGGGTGATGAGACCTTGCA
AATCTGCGGCGAACCCTGCGGCAAACCTGGCTATGAAAGGCCTTCCCTCA
CTGCCCCTCTTCTCGGGGATGCTCCGGCGCCGTGTCCGCTGCCAGCTTGT
CAACTTCACCCTCTGTTGGTGGCTGAAATTGTGAACAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11710:1623..1961+

>mRNA_P-wetherbeei_contig11710.1.1 ID=mRNA_P-wetherbeei_contig11710.1.1|Name=mRNA_P-wetherbeei_contig11710.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig11710:1623..1961+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCAGGGCTTTCTCGCTGGGTGTGTGAACCTGATGTGTTCGTGCTT
CCTCTCGTTTATTTTTTCTTTGCTCTTTTTATCACTTACGGGAAGCGATG
ACCAGAAAGGTGGAGTTTCATGCGCAAGGTTACCCGGTAGCGAGCTCGCT
TCGTCGGTTGAGGAGAAAGAGGGTGATGAGACCTTGCAAATCTGCGGCGA
ACCCTGCGGCAAACCTGGCTATGAAAGGCCTTCCCTCACTGCCCCTCTTC
TCGGGGATGCTCCGGCGCCGTGTCCGCTGCCAGCTTGTCAACTTCACCCT
CTGTTGGTGGCTGAAATTGTGAACAAG
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