mRNA_P-wetherbeei_contig11697.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11697.1.1
Unique NamemRNA_P-wetherbeei_contig11697.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11697.1.1 vs. uniprot
Match: A0A1E7FJD6_9STRA (HECT-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJD6_9STRA)

HSP 1 Score: 286 bits (732), Expect = 2.400e-93
Identity = 146/259 (56.37%), Postives = 179/259 (69.11%), Query Frame = 1
Query:    1 TGMFLQLGKSQELWFNRDCTWCEEEYSLIGTLMGLAVYNAVLLDVRFPLAVYKKLLGLPLCLNDLEDLDPELRHGLQALLDYDKDDVEDVFCRTFEITWDDFGQQRSHELRPGGAETAVTAANKEEYVAGYCAWLLTGSVAAQFDSFFRGFNRVMGRALGSLALLRAEELELLVAGQPHLDFRELEKVAKYEGGYSVEHPTVKQLWKVVLSMDLDTQRKFLMFVTGTMKAPVGGLGKLRFVVQRAGPDSMQLPTSHTCF 777
            TGM+     + + WFN  CTW  E Y L+G L GLAVYN V+LDV FP A+Y+KLL LPL L DL  +D ++R GL+ LL+YD DD ED+FC  FEITW   GQQ+  EL+PGG++ AVT+ NKEEYV  Y  WLL  S+  Q+D F RGF  VM  +  SL +L AEELELLV G P LDF  LEK + YEGGY  +   VK +WK + S  L TQ  FL F TG+ KAP+GGLG++ F +QRAGPDS+QLPT+HTCF
Sbjct:   27 TGMWT-TSSTNDTWFNTVCTWNGEGYYLVGVLCGLAVYNTVILDVHFPHAIYRKLLRLPLGLEDL--IDEDVRKGLKTLLEYDGDDAEDIFCLNFEITWMVLGQQQKKELKPGGSDIAVTSENKEEYVMLYVKWLLVDSIGPQYDEFERGFMTVMEDS--SLEILLAEELELLVTGTPELDFYALEKSSTYEGGYDTDSTVVKNIWKWIQSASLTTQESFLKFCTGSSKAPIGGLGEMPFKIQRAGPDSIQLPTAHTCF 280          
BLAST of mRNA_P-wetherbeei_contig11697.1.1 vs. uniprot
Match: A0A7S4QMC4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QMC4_9STRA)

HSP 1 Score: 281 bits (718), Expect = 1.720e-89
Identity = 146/252 (57.94%), Postives = 173/252 (68.65%), Query Frame = 1
Query:   22 GKSQELWFNRDCTWCEEEYSLIGTLMGLAVYNAVLLDVRFPLAVYKKLLGLPLCLNDLEDLDPELRHGLQALLDYDKDDVEDVFCRTFEITWDDFGQQRSHELRPGGAETAVTAANKEEYVAGYCAWLLTGSVAAQFDSFFRGFNRVMGRALGSLALLRAEELELLVAGQPHLDFRELEKVAKYEGGYSVEHPTVKQLWKVVLSMDLDTQRKFLMFVTGTMKAPVGGLGKLRFVVQRAGPDSMQLPTSHTCF 777
            G  Q  WFN DC+W E+ Y L+G L+GLA+YN VLLDV FP AVY+KL+ LPL L D+  +D E+R GLQ LLDYD DDVED+FC TFE+ W + G QR  EL+PGGA+  VT+ N+EEYV  Y  WLL  SV AQ+D+F RGF RVM  +  SL LL   ELELLV G P LDF  L     YEG Y+ E   V+  W+ V     DTQ K L F TG+ +AP+GGLGKL F +QRAGPDSM LPTSHTCF
Sbjct:  165 GDEQVTWFNSDCSWNEDGYYLVGILVGLALYNGVLLDVHFPSAVYRKLMALPLALEDM--VDKEVRSGLQQLLDYDGDDVEDIFCLTFEVMWMEMGNQRKLELKPGGADIPVTSDNREEYVMLYVRWLLVESVRAQYDAFERGFMRVMDSS--SLDLLTPGELELLVVGTPDLDFSALMSNTTYEG-YTEESEVVQNFWRFVKGASRDTQIKLLKFATGSTRAPIGGLGKLPFKIQRAGPDSMHLPTSHTCF 411          
BLAST of mRNA_P-wetherbeei_contig11697.1.1 vs. uniprot
Match: B7G8Z6_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8Z6_PHATC)

HSP 1 Score: 276 bits (706), Expect = 2.300e-89
Identity = 137/250 (54.80%), Postives = 175/250 (70.00%), Query Frame = 1
Query:   28 SQELWFNRDCTWCEEEYSLIGTLMGLAVYNAVLLDVRFPLAVYKKLLGLPLCLNDLEDLDPELRHGLQALLDYDKDDVEDVFCRTFEITWDDFGQQRSHELRPGGAETAVTAANKEEYVAGYCAWLLTGSVAAQFDSFFRGFNRVMGRALGSLALLRAEELELLVAGQPHLDFRELEKVAKYEGGYSVEHPTVKQLWKVVLSMDLDTQRKFLMFVTGTMKAPVGGLGKLRFVVQRAGPDSMQLPTSHTCF 777
            S+  WFN DC W ++ Y L+G L+GLA+YN+VLLDV FP AVY+KLLGLPL L D+  +D E++ GLQ LLDY  DDVEDVFC TF++ W D G+++  EL+PGG +T VT+ NKEEYV  Y  WLL  S+  Q+++F RGF RVM  +  SL LLR ++LELLV G P LDF  L    +YEGGY  E   V+  WK V     +T+   L F TG+ KAP+GGLG+L F +Q++GPDS QLP+SHTCF
Sbjct:   38 SRITWFNSDCIWDDDGYFLVGVLVGLALYNSVLLDVHFPQAVYRKLLGLPLGLEDM--VDEEVKSGLQHLLDYSDDDVEDVFCLTFDVAWTDLGEEKRKELKPGGIDTPVTSDNKEEYVILYVKWLLVDSIYPQYEAFERGFMRVMENS--SLDLLRPQDLELLVVGTPELDFNALMSNTQYEGGYDSESAVVRNFWKFVEETSHETRLNLLKFATGSSKAPIGGLGELSFKIQKSGPDSDQLPSSHTCF 283          
BLAST of mRNA_P-wetherbeei_contig11697.1.1 vs. uniprot
Match: A0A7S2R9E4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9E4_9STRA)

HSP 1 Score: 292 bits (747), Expect = 4.620e-89
Identity = 150/260 (57.69%), Postives = 184/260 (70.77%), Query Frame = 1
Query:    4 GMFLQLGKSQELWFNRDCTWCEEEYSLIGTLMGLAVYNAVLLDVRFPLAVYKKLL-GLPLCLNDLEDLDPELRHGLQALLDYDKDD-VEDVFCRTFEITWDDFGQQRSHELRPGGAETAVTAANKEEYVAGYCAWLLTGSVAAQFDSFFRGFNRVMGRALGSLALLRAEELELLVAGQPHLDFRELEKVAKYEGGYSVEHPTVKQLWKVVLSMDLDTQRKFLMFVTGTMKAPVGGLGKLRFVVQRAGPDSMQLPTSHTCF 777
            GMF ++G S  LWFN+ CTW + EYSL+G L+GLA+YN V+LDV FPL VYKKLL      L D+  LDPEL  GL+ LL+++    VED FCR+FE+TW  FG     EL+PGG+E  +T  N++EYV  Y  WLL  SV  QF +F +GF+RVMG A  +L LLR E+LE +V+G PHLDF+EL +V  YEGGY   HP ++  W VV SMDLDTQRK LMF TG++KAP+GGL  L F V R GPDS QLPTSHTCF
Sbjct:  643 GMFTRVGGS--LWFNQGCTWSDGEYSLVGMLIGLALYNGVILDVHFPLVVYKKLLPDQRWTLRDVAFLDPELARGLRQLLEFEPAGLVEDTFCRSFEVTWTSFGADHVTELKPGGSEILITGENRKEYVELYVRWLLEQSVEQQFGAFKQGFDRVMGSA--TLGLLRPEDLEAIVSGTPHLDFKELRRVTVYEGGYHDHHPVMEWFWDVVESMDLDTQRKLLMFATGSVKAPIGGLKNLTFKVHRMGPDSEQLPTSHTCF 898          
BLAST of mRNA_P-wetherbeei_contig11697.1.1 vs. uniprot
Match: A0A1Z5JAZ9_FISSO (Ubiquitin-protein ligase E3 A n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAZ9_FISSO)

HSP 1 Score: 293 bits (750), Expect = 9.150e-88
Identity = 147/246 (59.76%), Postives = 179/246 (72.76%), Query Frame = 1
Query:   40 WFNRDCTWCEEEYSLIGTLMGLAVYNAVLLDVRFPLAVYKKLLGLPLCLNDLEDLDPELRHGLQALLDYDKDDVEDVFCRTFEITWDDFGQQRSHELRPGGAETAVTAANKEEYVAGYCAWLLTGSVAAQFDSFFRGFNRVMGRALGSLALLRAEELELLVAGQPHLDFRELEKVAKYEGGYSVEHPTVKQLWKVVLSMDLDTQRKFLMFVTGTMKAPVGGLGKLRFVVQRAGPDSMQLPTSHTCF 777
            WFN DCTW E+ Y L+G L GL +YN VLLDV FP AVY+KLL LPL L DL  +DPE+R G+Q LLDYD DDVED+FC +FE++W D G+++  EL+PGGA+  VT+ NKEEYV  Y  WLL  S+  Q+++F +G  R+M  +  SL L R EELELLV G P LDF  LEK A+YEGGY+ E   V+ LWK + S DLDT+ KFL F TG+ KAP+GGLG L+F VQRAG DS  LPTSHTCF
Sbjct: 1022 WFNSDCTWDEQGYELVGILFGLGLYNGVLLDVHFPQAVYRKLLDLPLGLEDL--VDPEIRKGMQQLLDYDGDDVEDIFCLSFEVSWMDLGEEKKVELKPGGADIPVTSFNKEEYVLLYVKWLLVDSIQPQWEAFKKGVLRIMESS--SLDLFRPEELELLVVGTPELDFEALEKNAEYEGGYTKESDAVQNLWKYLKSADLDTKMKFLQFSTGSSKAPIGGLGSLQFKVQRAGIDSDHLPTSHTCF 1263          
BLAST of mRNA_P-wetherbeei_contig11697.1.1 vs. uniprot
Match: E1Z9J1_CHLVA (HECT domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z9J1_CHLVA)

HSP 1 Score: 271 bits (692), Expect = 1.970e-85
Identity = 142/257 (55.25%), Postives = 177/257 (68.87%), Query Frame = 1
Query:    7 MFLQLGKSQELWFNRDCTWCEEEYSLIGTLMGLAVYNAVLLDVRFPLAVYKKLLGLPLCLNDLEDLDPELRHGLQALLDYDKDDVEDVFCRTFEITWDDFGQQRSHELRPGGAETAVTAANKEEYVAGYCAWLLTGSVAAQFDSFFRGFNRVMGRALGSLALLRAEELELLVAGQPHLDFRELEKVAKYEGGYSVEHPTVKQLWKVVLSMDLDTQRKFLMFVTGTMKAPVGGLGKLRFVVQRAGPDSMQLPTSHTCF 777
            MF     ++  WF+      E+EY+L+G ++GLA+YNAV+LDV FPLAVYKKLLG+     DL+   P+L  GLQ LLD++ D VE VFCR+F   ++ +G+ R  EL+PGGA   VTAAN+ EYV  Y AWLL GSV  QF +F  GF RV G    +L L    ELELLV G PHLDF  L+ VAKYEGGYS EH  V+  W+V+ S+ L+ +R FLMF TG+ +APVGGLGKL  ++QRAGPDS  LPTSHTCF
Sbjct:  170 MFTYNELTRTHWFSPASLEAEDEYALVGAVLGLAIYNAVILDVHFPLAVYKKLLGIRPTFADLKAAFPDLGRGLQQLLDFEGD-VEAVFCRSFTAQYEFYGEMREEELKPGGASIPVTAANRREYVDLYTAWLLEGSVGRQFGAFRAGFLRVCGGP--ALTLFTPAELELLVCGLPHLDFEALQAVAKYEGGYSAEHQEVRWFWEVLHSLSLEQKRAFLMFTTGSDRAPVGGLGKLPLLIQRAGPDSDNLPTSHTCF 423          
BLAST of mRNA_P-wetherbeei_contig11697.1.1 vs. uniprot
Match: W7TN24_9STRA (Ubiquitin protein ligase e3a n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN24_9STRA)

HSP 1 Score: 287 bits (735), Expect = 2.010e-85
Identity = 146/271 (53.87%), Postives = 186/271 (68.63%), Query Frame = 1
Query:    4 GMFLQLGKSQELWFNRDCTWC--EEEYSLIGTLMGLAVYNAVLLDVRFPLAVYKKLLGLPLCLNDLEDLDPELRHGLQALLDYDKD-----------DVEDVFCRTFEITWDDFGQQRSHELRPGGAETAVTAANKEEYVAGYCAWLLTGSVAAQFDSFFRGFNRVMGRALGSLALLRAEELELLVAGQPHLDFRELEKVAKYEGGYSVEHPTVKQLWKVVLSMDLDTQRKFLMFVTGTMKAPVGGLGKLRFVVQRAGPDSMQLPTSHTCF 777
            GMF      ++ WFN   T     +EY L+G L+GLA+YN+VLLD+ FPL VYKKLLG P+ L+DL +++PEL  GL  LLDY++D            VEDVFC  FE+ W +F + + HEL+PGG +  VTAAN+ EYV  Y  W+L  S+A  F++F  G++ VMG +  S++LLR EEL LLV G PHL+  ELE VAKYEGGY  EHP +K  W VV  MDL +QR FLMFVTG+ KAP+GGLG+L  ++QRAGPDS  LPT+HTCF
Sbjct: 1135 GMFKMTESKRDWWFNSSGTSFGDPQEYQLVGILVGLALYNSVLLDLHFPLVVYKKLLGRPVGLSDLGEIEPELMEGLLKLLDYEEDAKNTGEEGAMAKVEDVFCLNFEVDWVEFDEVKRHELKPGGKDIEVTAANRHEYVDLYVQWVLAESIAKPFEAFKAGYDHVMGGS--SISLLRPEELMLLVCGTPHLNLHELEAVAKYEGGYEAEHPVIKAFWSVVHEMDLASQRNFLMFVTGSAKAPIGGLGRLALLIQRAGPDSDHLPTAHTCF 1403          
BLAST of mRNA_P-wetherbeei_contig11697.1.1 vs. uniprot
Match: A0A7S4ASY0_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ASY0_9STRA)

HSP 1 Score: 282 bits (721), Expect = 1.110e-84
Identity = 142/259 (54.83%), Postives = 180/259 (69.50%), Query Frame = 1
Query:    1 TGMFLQLGKSQELWFNRDCTWCEEEYSLIGTLMGLAVYNAVLLDVRFPLAVYKKLLGLPLCLNDLEDLDPELRHGLQALLDYDKDDVEDVFCRTFEITWDDFGQQRSHELRPGGAETAVTAANKEEYVAGYCAWLLTGSVAAQFDSFFRGFNRVMGRALGSLALLRAEELELLVAGQPHLDFRELEKVAKYEGGYSVEHPTVKQLWKVVLSMDLDTQRKFLMFVTGTMKAPVGGLGKLRFVVQRAGPDSMQLPTSHTCF 777
            TGM+  + +  E WFN DCTW  E Y L+G L GLAVYN+V+LDV FP  +Y+KLLG+PL L DL  +D ++R GL++LLDY  DDVE +FC  FE++W D GQ+R  EL+PGG+   VT+ NKEEYV  Y  WLL  S+A+Q++ F RGFN+VM  A  SL +L  +ELELLV G P LDF  LE+  +YEGG+      VK +WK + S  L  Q KFL F TG+ K P+GGLG + F +QRAGPDS QLPT+HTCF
Sbjct:  750 TGMWT-ISEYNETWFNSDCTWNGEGYYLVGVLCGLAVYNSVILDVHFPRVIYRKLLGIPLGLEDL--IDKDVRKGLKSLLDYGGDDVEGMFCLNFEVSWMDLGQERKKELKPGGSHIVVTSKNKEEYVMLYVKWLLADSIASQYNEFERGFNQVM--ADSSLDILTVDELELLVTGTPVLDFCALEQSCEYEGGFDANSAVVKNIWKWIKSETLHKQEKFLRFCTGSSKGPMGGLGVMPFKIQRAGPDSSQLPTAHTCF 1003          
BLAST of mRNA_P-wetherbeei_contig11697.1.1 vs. uniprot
Match: D7FWC7_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC7_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 4.140e-84
Identity = 142/259 (54.83%), Postives = 177/259 (68.34%), Query Frame = 1
Query:    4 GMFLQLGKS-QELWFNRDCTWCEEEYSLIGTLMGLAVYNAVLLDVRFPLAVYKKLLGLPLCLNDLEDLDPELRHGLQALLDYDKDDVEDVFCRTFEITWDDFGQQRSHELRPGGAETAVTAANKEEYVAGYCAWLLTGSVAAQFDSFFRGFNRVMGRALGSLALLRAEELELLVAGQPHLDFRELEKVAKYEGGYSVEHPTVKQLWKVVLSMDLDTQRKFLMFVTGTMKAPVGGLGKLRFVVQRAGPDSMQLPTSHTCF 777
            GMF+  G+  + LWFN+DC W +EEY L+G L+GLAVY+ V+LDV  PL V+KK+LG  L L DL D+DP L  G   L DYD  D EDVF   F +TWDD G +RSH+L  GGA   VT+ NKE YV  Y  +LL G+V+ Q D F +GF RVM  A  S++L RAEELE+LV G   LDF EL K  +Y+GGY  +H T+   W+ V  M  + QR+ LMFVTG+ KAP+GGLGKL F +QRAGPD+  LPT+HTCF
Sbjct:  921 GMFVPAGEGGRVLWFNKDCVWADEEYGLVGLLVGLAVYSGVILDVPLPLVVFKKVLGEQLSLEDLGDIDPGLLKGFHQLRDYDGGDDEDVFGLDFRVTWDDLGMERSHDLVEGGANIPVTSENKESYVELYAQFLLVGAVSRQMDHFKQGFLRVMSGA-ASISLFRAEELEVLVTGTSELDFEELAKATEYDGGYDEDHRTILAFWRAVGRMPAEEQRRLLMFVTGSKKAPLGGLGKLTFKIQRAGPDTDHLPTAHTCF 1178          
BLAST of mRNA_P-wetherbeei_contig11697.1.1 vs. uniprot
Match: A0A7S2YF11_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YF11_9STRA)

HSP 1 Score: 267 bits (682), Expect = 2.080e-79
Identity = 138/260 (53.08%), Postives = 178/260 (68.46%), Query Frame = 1
Query:    1 TGMFLQ-LGKSQELWFNRDCTWCEEEYSLIGTLMGLAVYNAVLLDVRFPLAVYKKLLGLPLCLNDLEDLDPELRHGLQALLDYDKDDVEDVFCRTFEITWDDFGQQRSHELRPGGAETAVTAANKEEYVAGYCAWLLTGSVAAQFDSFFRGFNRVMGRALGSLALLRAEELELLVAGQPHLDFRELEKVAKYEGGYSVEHPTVKQLWKVVLSMDLDTQRKFLMFVTGTMKAPVGGLGKLRFVVQRAGPDSMQLPTSHTCF 777
            TGM+     +S   WFN DCTW +E Y L+G L GLAVYN V+LDV FP AVY+KLLG  L L D+  +D E R+GLQ LL+Y+ DDVED+FC +FE TW D G +R  EL+PGGA+  VT+ N+EEYV  Y  WLL  S+ AQ+++F RG  +V+  +  SL LL+ EELELL+ G P LD    E+   YEG +  + P ++  W+ V + D +T  + L F TGT +AP+GGLGK+ F +QRAGPDSMQLPTSHTCF
Sbjct:  691 TGMWSSHFDESGTTWFNGDCTWNDEGYYLVGVLTGLAVYNDVILDVHFPRAVYRKLLGYTLGLEDM--VDEETRNGLQQLLNYEGDDVEDIFCLSFEHTWMDLGIERKVELKPGGADIPVTSQNREEYVMLYVKWLLVDSIHAQYEAFERGVMQVLESS--SLDLLQPEELELLLVGSPDLDIDAWEQNTTYEG-FEADSPVIRNFWRFVRNSDRETHLQLLKFSTGTSRAPIGGLGKMNFTIQRAGPDSMQLPTSHTCF 945          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11697.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E7FJD6_9STRA2.400e-9356.37HECT-domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S4QMC4_9STRA1.720e-8957.94Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
B7G8Z6_PHATC2.300e-8954.80Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
A0A7S2R9E4_9STRA4.620e-8957.69Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Z5JAZ9_FISSO9.150e-8859.76Ubiquitin-protein ligase E3 A n=2 Tax=Fistulifera ... [more]
E1Z9J1_CHLVA1.970e-8555.25HECT domain-containing protein n=1 Tax=Chlorella v... [more]
W7TN24_9STRA2.010e-8553.87Ubiquitin protein ligase e3a n=2 Tax=Monodopsidace... [more]
A0A7S4ASY0_9STRA1.110e-8454.83Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
D7FWC7_ECTSI4.140e-8454.83HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2YF11_9STRA2.080e-7953.08Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11697contigP-wetherbeei_contig11697:147..2007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWC7
PFAMsHECT,RCC1
Model size783
Max annot lvl2759|Eukaryota
KEGG koko:K10587,ko:K10615
KEGG Pathwayko04120,ko05165,ko05203,map04120,map05165,map05203
Hectar predicted targeting categoryother localisation
Exons5
Evalue4.35e-84
EggNOG OGsCOG5021@1|root,KOG0941@2759|Eukaryota
EC2.3.2.26
Descriptionubiquitin-protein transferase activity
Cds size777
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11697.1.1prot_P-wetherbeei_contig11697.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11697 153..2007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185922.7734222-UTR-P-wetherbeei_contig11697:146..1521683185922.7734222-UTR-P-wetherbeei_contig11697:146..152Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11697 147..152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185922.7836664-CDS-P-wetherbeei_contig11697:152..4131683185922.7836664-CDS-P-wetherbeei_contig11697:152..413Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11697 153..413 +
1683185922.7940288-CDS-P-wetherbeei_contig11697:686..8781683185922.7940288-CDS-P-wetherbeei_contig11697:686..878Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11697 687..878 +
1683185922.8013668-CDS-P-wetherbeei_contig11697:1016..11491683185922.8013668-CDS-P-wetherbeei_contig11697:1016..1149Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11697 1017..1149 +
1683185922.8088775-CDS-P-wetherbeei_contig11697:1479..15741683185922.8088775-CDS-P-wetherbeei_contig11697:1479..1574Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11697 1480..1574 +
1683185922.81672-CDS-P-wetherbeei_contig11697:1911..20071683185922.81672-CDS-P-wetherbeei_contig11697:1911..2007Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11697 1912..2007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11697.1.1

>prot_P-wetherbeei_contig11697.1.1 ID=prot_P-wetherbeei_contig11697.1.1|Name=mRNA_P-wetherbeei_contig11697.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=259bp
MFLQLGKSQELWFNRDCTWCEEEYSLIGTLMGLAVYNAVLLDVRFPLAVY
KKLLGLPLCLNDLEDLDPELRHGLQALLDYDKDDVEDVFCRTFEITWDDF
GQQRSHELRPGGAETAVTAANKEEYVAGYCAWLLTGSVAAQFDSFFRGFN
RVMGRALGSLALLRAEELELLVAGQPHLDFRELEKVAKYEGGYSVEHPTV
KQLWKVVLSMDLDTQRKFLMFVTGTMKAPVGGLGKLRFVVQRAGPDSMQL
PTSHTCFK*
back to top

mRNA from alignment at P-wetherbeei_contig11697:147..2007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11697.1.1 ID=mRNA_P-wetherbeei_contig11697.1.1|Name=mRNA_P-wetherbeei_contig11697.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1861bp|location=Sequence derived from alignment at P-wetherbeei_contig11697:147..2007+ (Phaeothamnion wetherbeei SAG_119_79)
ACAGGCATGTTCCTGCAGCTGGGCAAGTCGCAAGAGCTGTGGTTCAACCG CGACTGCACGTGGTGCGAGGAGGAGTATTCCCTCATCGGAACCCTCATGG GCCTCGCCGTATACAACGCCGTGCTCTTGGACGTGCGATTTCCGCTCGCC GTCTACAAGAAGCTGCTGGGGCTGCCGCTCTGCCTGAACGACCTGGAGGA TTTGGACCCCGAGCTGCGGCACGGGCTGCAGGCCCTGCTCGACTACGACA AGGACGACGTTGAGGACGTAAGTCGAGTTGTTGTGTTTGCTTGCTTGTCG GTTCGGATTTTGATTTGCTCAGTTCGCTAGTTTGGGTTTCGGGGAGTTGG CGGAGCTTGCTTGCGAGTCGCTTTCGCTTCGATTGACAGGATTTCGGTTT CTATGTGCGGGAATTCTTTTTCGTTTTTCTTAATTCCGGAGGATCAGGTG ATTTCAATTAGTGCCTTGTCTGTTTGTATTCAGGACCTCTCTCCAGTTAG TGTAACACCTTCCCCTGCCTCAACACAAACAAAACGAAAGGTGTTCTGCC GCACCTTCGAGATTACGTGGGACGATTTCGGCCAGCAGCGCTCACACGAG CTGCGGCCCGGCGGCGCCGAAACTGCCGTAACCGCCGCCAACAAGGAAGA GTACGTCGCTGGCTACTGCGCCTGGCTGCTGACGGGCAGCGTGGCAGCGC AGTTCGACTCGTTCTTCCGCGGCTTCAACCGGGTGCGTTTCGGTCGGGTC TTCTGCTGGGGTTTGATCGGAACCGATAATCTGTGGAACCCTAAGCGTAA CGGCTGGAACCATAAGTCTAAGAATTTCGTGCTGCATGCTTGTGACTTCA TAACCGCTTCCGCAAATCAGGTGATGGGACGGGCGCTGGGGTCGCTGGCG CTGTTGCGCGCGGAGGAGCTGGAGCTGCTCGTGGCTGGCCAGCCGCACCT CGACTTCCGCGAGCTGGAAAAGGTGGCCAAGTACGAGGGCGGCTACAGCG TCGGTGAGTTATCGAATTGCAATTGTCTTCTTTTCTTTTTTTCTCTTTTT TGCTTCTCGGGAGTTTGGGGAAGCAGGAGGAAGGTCTTGGCACACCTCTC TCCCTCGTTTTTGGCGATTCGATTTCTTTTGCCTGCCTCTGCGTGCCAGA AAAAAGGAGTTATGCCTTGAGGGACTTGAGGAAGCAGCGGCGCCGTGCAA TACTGTGCCTCTGATTCTGTCAGTATCTTTTCCAATTGCCGCTTCCGCCG TCCTGTTTCGATGCGACGGCGTGCATCTTTCGACATTCGTTGCTGGTCCG TCGATGGGTCGCACCGATCGAATCTGCCAACAGAGCACCCGACGGTGAAG CAGCTGTGGAAGGTTGTGCTGTCGATGGATCTCGACACGCAGCGGAAGTT CCTCATGTTTGTGACCGGCACCATGAAGGTCGGTTTTCGGTTTCTCGGTT TACTTCTTTTTGCTTCAATTTTTGGCCCCGTCGATTGGCCTCTCTGGTTT TCACCTGGTTATGCACACTGGAGGCTCGAATCCTCAATATGGTGATGGCT CTTTTCTGATTGTAGTTCACATAGTAACCAGCTAAACGCCTTTCTCCTTG ATTGTCAACAAGTGATGGCCACGTTCGGGATGCCCGCGTCGTTGCGTGTC CAAGGGTAGCTGGATTTGATGCATGTCATGTGATTGTTCCTCTCCAAGGA ATGCCTGTCCGCTTACACGCCGACTCAACTCTTCTCGTCCTTCATCCTTG CTTTTTCCGCGGCAGGCACCGGTGGGTGGCCTGGGAAAGCTGAGATTTGT GGTGCAGCGGGCGGGCCCTGACAGCATGCAGCTGCCGACGAGCCACACCT GCTTCAAGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11697:147..2007+

>mRNA_P-wetherbeei_contig11697.1.1 ID=mRNA_P-wetherbeei_contig11697.1.1|Name=mRNA_P-wetherbeei_contig11697.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig11697:147..2007+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCCTGCAGCTGGGCAAGTCGCAAGAGCTGTGGTTCAACCGCGACTG
CACGTGGTGCGAGGAGGAGTATTCCCTCATCGGAACCCTCATGGGCCTCG
CCGTATACAACGCCGTGCTCTTGGACGTGCGATTTCCGCTCGCCGTCTAC
AAGAAGCTGCTGGGGCTGCCGCTCTGCCTGAACGACCTGGAGGATTTGGA
CCCCGAGCTGCGGCACGGGCTGCAGGCCCTGCTCGACTACGACAAGGACG
ACGTTGAGGACGTGTTCTGCCGCACCTTCGAGATTACGTGGGACGATTTC
GGCCAGCAGCGCTCACACGAGCTGCGGCCCGGCGGCGCCGAAACTGCCGT
AACCGCCGCCAACAAGGAAGAGTACGTCGCTGGCTACTGCGCCTGGCTGC
TGACGGGCAGCGTGGCAGCGCAGTTCGACTCGTTCTTCCGCGGCTTCAAC
CGGGTGATGGGACGGGCGCTGGGGTCGCTGGCGCTGTTGCGCGCGGAGGA
GCTGGAGCTGCTCGTGGCTGGCCAGCCGCACCTCGACTTCCGCGAGCTGG
AAAAGGTGGCCAAGTACGAGGGCGGCTACAGCGTCGAGCACCCGACGGTG
AAGCAGCTGTGGAAGGTTGTGCTGTCGATGGATCTCGACACGCAGCGGAA
GTTCCTCATGTTTGTGACCGGCACCATGAAGGCACCGGTGGGTGGCCTGG
GAAAGCTGAGATTTGTGGTGCAGCGGGCGGGCCCTGACAGCATGCAGCTG
CCGACGAGCCACACCTGCTTCAAGTGA
back to top