mRNA_P-wetherbeei_contig1169.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1169.1.1
Unique NamemRNA_P-wetherbeei_contig1169.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1169.1.1 vs. uniprot
Match: D7G2X1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X1_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 1.470e-63
Identity = 186/548 (33.94%), Postives = 254/548 (46.35%), Query Frame = 1 
Query:    1 SRSERLLQARAHYDVFLLSVTMGAWAGHTRERGHMWRLAGRIVRVWRGW---AAVHRCVAGSKQGLRMRLRLIRLDRCISHMRAYTRVRRLLGTLNMARLLQTRHTGAALQICYTATQQTTQLVMTLAWQAWRRLATQRRRWKWLLYAHRRIETRHLLRTVLNAWAALPGLRSRRGTPAARGDGSSIGSACSGGGPAGATLSLHASLPFPVYDRLT-DAIGRGQVPTEQLLQDMRDSGVIMQQTSRWALKR------------VAAVSGAVPEFQRCRRGGDG------SGGSGGG-----SDYSGGSGQPSM-------ALFTAIDNCDAQEVLALLRDGVDVNAVYERPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAAKDRGGSVSGEDEDGFGA------PRIRTGIDGFAEVWGTTPLHAAAAHLSGDFLPIIVLLLHSGASTTALDADGRTPLQVTSNPIIAAVLSEHAVRLAGRNGGVGEKAWGFVVCSAAIADASTAPLWRYVVVRTAQARLVALAPLLACDDDFVSD 1524
            S+ +R ++A  H+DV  ++    AWA   R+RG M R   R  R W+GW    +  +     K+     +RL+R    +S + AY R  ++L +  +++LL T     A+ + Y AT Q TQL   LAWQAW++   +RRRWKWLLY H + E  H  ++V  AW+   G R R                     P  A+L+L A+LPF  +DRL  + + +G +P EQL +D+ D  V+ Q T+ W L +             A +SG     +   RGG+       SG  GGG     S +    G  ++       ALF A+D+CD  EV+ LL  G  VN VY  P                                       I  +DR G  SG    G G       P +    DG  ++ GTTPLHAAA H SGD+  I+V LLH+GAS  ALDA G+TPLQV ++P IAAVLSEHA RL        E  WG  + ++         LWRYVV     ARL  L+  L  +D    D
Sbjct:  474 SQEQREIEASQHHDVHKVTKVFAAWASVCRDRGSMLR---RTTRCWQGWKRFTSSRKISKMLKKKTVEHIRLLRTGSVMSDVTAYARDGKILSSFTVSKLLLTTKFFGAMALGYVATGQITQLFSLLAWQAWKQYTVRRRRWKWLLYEHTKAEAFHARQSVFRAWSYATGRRYR---------------------PDAASLTLSAALPFSTWDRLLKNYVDQGVIPMEQLHKDLVDHSVMQQNTAWWLLGQDSAERPIRDSSSAAVLSGLGTSEEDPSRGGESRMELPKSGAGGGGVRGRLSRHGVSEGPAAVDWRTLAPALFVAVDDCDEAEVMDLLHRGAQVNCVYVPP-----------------------ESAPLSDGGVSKRSRGITKQDRNGGESGSGILGVGRILDLPPPALIAQSDGTFQMRGTTPLHAAAGHFSGDYTSIVVALLHAGASVGALDAAGKTPLQVCTSPQIAAVLSEHANRLQPHKFSPQELRWGQQILTSERHGCGATGLWRYVVRAAVVARLDKLSAALRAEDTRAED 974
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BLAST of mRNA_P-wetherbeei_contig1169.1.1 vs. uniprot
Match: A0A835YQM2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQM2_9STRA)

HSP 1 Score: 162 bits (410), Expect = 7.300e-39
Identity = 158/551 (28.68%), Postives = 210/551 (38.11%), Query Frame = 1 
Query:   73 WAGHTRERGHMWRLAGRIVRVWRGWAAVHRCVAGSKQGLRMRLRLIRLDRCISHMRAYTRVRRLLGTLNMARLLQTRHTGAALQI------------------CYTATQQTTQLVMTLAWQAWRRLATQRRRWKWLLYAHRRIETRHLLRTVLNAWAALPGLRSRRGTPAARGDGSSIGSACSGGGPAGATLSLHASLPFPVYDRLTDAIGRGQVPTEQLLQDMRDSGVIMQQTSRWALKRV-----------AAVSGAVPEFQ--RCRRGGDGSGGSGGGSDYSGGSGQPSMA--------------------------------------------LFTAIDNCDAQEVLALLRDGVDVNAVYERPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAAKDRGGSVSGEDEDGFGAPRIRTGIDGFAEVWGTTPLHAAAAHLSGDFLPIIVLLLHSGASTTALDADGRTPLQVTSNPIIAAVLSEHAVRLAGRNGGVGEKAWGFVVCSAAIADASTAPLWRYVVVRTAQARLVALAPLLA 1500
            W    R +G M R+  R    WR WA +H+  A +K  +   +R +R +R +  M               AR+L         Q                   C+     T +L     WQAWRR A QRRRWKWL Y  RR+   HL RTVL AW    G R     P    +G+   SA         T +L A++PF   D+L   +G G +PT+QL +DM   GV+ Q+TS+W L +            AA S + P+ +  + ++   G   S     +   + +P +A                                            LF A D CD   V  LL  G +VNAV+                                            A   G    G   +    P   T  DG   V GTTPLH AA+H S  +  ++VLLLH GAS  ALD  GRTPL V +NP+  A+LS H  RLA       E AWG    +          +WRYVV R    +L  +A  LA
Sbjct:  378 WHNTCRTKGQMQRVVQRCFAAWRRWAPLHQRSAAAKAAVLDHVRALRSERALLAMHRLASDAHARDQAAAARILDAPIFHVVAQAAXXXXXXXXXXXXXXXXXCFAMYSDTDRLCAFTCWQAWRRTAVQRRRWKWLQYEQRRVAGMHLCRTVLRAWYFATGQR-----PFQVVNGTLTASA--------GTPALLAAIPFGTLDKLCTVLGHGVLPTKQLKRDMSSGGVMAQETSKWLLGQPIWDADGEFMTPAATSSSAPQDKAGKVQQPLAGKRASPAALAHGTTAPRPPLATLCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAELFAAADACDTARVRELLCAGAEVNAVW-----------------LPSMAAAAAAGADETSTSTGGNAELTEAGSGGDGARGWAAEAQHQPLRVTHADGVQAVRGTTPLHLAASHFSPAYAGVVVLLLHCGASAAALDRRGRTPLDVATNPVTVALLSAHESRLAAARYTRRELAWGLAAVTEHWGGCGGRGMWRYVVYRAVGQKLAGVAAQLA 898
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1169.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2X1_ECTSI1.470e-6333.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YQM2_9STRA7.300e-3928.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1169contigP-wetherbeei_contig1169:1508..3929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G2X1
Model size1524
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.41e-64
EggNOG OGs2ATNU@1|root,2RZSD@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-09_004610.1
Descriptionankyrin repeats
Cds size1524
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185922.4417365-CDS-P-wetherbeei_contig1169:1507..16561683185922.4417365-CDS-P-wetherbeei_contig1169:1507..1656Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1169 1508..1656 -
1683185922.4638894-CDS-P-wetherbeei_contig1169:1788..27441683185922.4638894-CDS-P-wetherbeei_contig1169:1788..2744Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1169 1789..2744 -
1683185922.4727259-CDS-P-wetherbeei_contig1169:3103..32821683185922.4727259-CDS-P-wetherbeei_contig1169:3103..3282Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1169 3104..3282 -
1683185922.481326-CDS-P-wetherbeei_contig1169:3689..39291683185922.481326-CDS-P-wetherbeei_contig1169:3689..3929Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1169 3690..3929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1169.1.1prot_P-wetherbeei_contig1169.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1169 1508..3929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1169.1.1

>prot_P-wetherbeei_contig1169.1.1 ID=prot_P-wetherbeei_contig1169.1.1|Name=mRNA_P-wetherbeei_contig1169.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=508bp
SRSERLLQARAHYDVFLLSVTMGAWAGHTRERGHMWRLAGRIVRVWRGWA
AVHRCVAGSKQGLRMRLRLIRLDRCISHMRAYTRVRRLLGTLNMARLLQT
RHTGAALQICYTATQQTTQLVMTLAWQAWRRLATQRRRWKWLLYAHRRIE
TRHLLRTVLNAWAALPGLRSRRGTPAARGDGSSIGSACSGGGPAGATLSL
HASLPFPVYDRLTDAIGRGQVPTEQLLQDMRDSGVIMQQTSRWALKRVAA
VSGAVPEFQRCRRGGDGSGGSGGGSDYSGGSGQPSMALFTAIDNCDAQEV
LALLRDGVDVNAVYERPPPPTAMAQQQGPPPPPPSPSLSLSLPADAAAAA
ATAGAAIAAKDRGGSVSGEDEDGFGAPRIRTGIDGFAEVWGTTPLHAAAA
HLSGDFLPIIVLLLHSGASTTALDADGRTPLQVTSNPIIAAVLSEHAVRL
AGRNGGVGEKAWGFVVCSAAIADASTAPLWRYVVVRTAQARLVALAPLLA
CDDDFVSD
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mRNA from alignment at P-wetherbeei_contig1169:1508..3929-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1169.1.1 ID=mRNA_P-wetherbeei_contig1169.1.1|Name=mRNA_P-wetherbeei_contig1169.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2422bp|location=Sequence derived from alignment at P-wetherbeei_contig1169:1508..3929- (Phaeothamnion wetherbeei SAG_119_79)
TCCCGCTCGGAACGGCTGCTGCAGGCGCGCGCCCATTACGACGTCTTCCT
GCTCAGCGTCACCATGGGGGCGTGGGCGGGCCACACGCGGGAGCGGGGTC
ACATGTGGCGGCTGGCTGGACGAATCGTGCGAGTGTGGCGGGGATGGGCG
GCCGTGCACCGCTGCGTCGCCGGCAGCAAGCAGGGCCTGCGTATGCGGCT
GCGTCTGATCCGCCTCGACCGCTGCATCTCCCACATGCGGGTGGGTTTCG
AGAAGGGGAAATGGGAGGCAGAAGACGAAGGACGATTGGTTCGCCACAGC
GCTGTTCTCTCGATTTGCTTCTCCTTTCTGTTTTCACTCTAGGTTTTTTC
CGCACTACGTTTTAAAGCTCTTTTGTAGTGTGCTGTTGTCTTTTTGTGGC
GTAGATGGGTTATCTAGCCGCGGTTGTTCCGAATGAAGCGGCACTTCACT
GTTTCCTCCTCCACACTGTTTCGCGCCCGCCACATCACCTTCTGTGCACC
TCGACCCATATCCTGGGCGACGGCCCATTGGCGCTGCTGGCACTGGCGAC
TGCATTATTGCGACGCTGCTGCCGGCGGTTGCGGCACCGACGGCGGCATC
GGCCGCTTCGGCGTCCTCTCCTTTTCAAACCATGATGGCGGCAACAGGCG
TACACGCGAGTGCGCCGCCTGCTGGGCACGCTCAACATGGCGCGGCTGCT
GCAAACGCGGCACACGGGGGCGGCGCTGCAGATTTGCTACACGGCGACGC
AGCAGACGACGCAGCTCGTCATGACGCTGGCGTGGCAGGCCTGGCGCCGG
CTCGCCACACAGCGCCGCCGGTGGAAGTGAGTAGTTTGCCCCTCAGTTAA
CCTCACTCTCCTTTCCTTCTTCCCTGTTTCAGCCGATCGTCTTCCATTTC
CTGTGAGCTCTCCTTTCGTTACTTACTTAGGATGTTTTAGCATAGCTTCT
CCGGCCTTTTGGCGTCAATGTTGAAGCGATTGGCCGGCTGGCAAACCGAT
CAAAGTTCCGCATTGCTCTGCAAAATTTCGTTTTGCGTGCGAGCAGCTTG
TCGGACGGAACTGTCGGAAACGACGGTACAATGTTGCTTCATGGCGGTAC
AAGCCGGTTCCTCCAGCCTCCTCCGCAGTTGGCGGGAAAAAAGAACCTCC
GCTTTTCGCTCGTTCTTCCGGTACGGCCGTCTCAGGTGGCTCCTATATGC
GCACCGCCGGATCGAGACGCGACACCTTCTCCGCACCGTCCTCAACGCCT
GGGCAGCCCTGCCCGGCCTGCGGAGCCGCCGGGGAACCCCGGCAGCCCGC
GGCGACGGCAGCAGCATCGGCTCCGCTTGCAGCGGCGGCGGGCCCGCCGG
GGCGACATTGTCGCTCCACGCCAGCCTTCCGTTTCCGGTGTACGACCGGC
TGACGGATGCCATCGGCCGTGGACAGGTGCCCACAGAGCAGCTGTTGCAG
GACATGCGCGACTCGGGGGTCATCATGCAACAAACGTCACGGTGGGCGCT
GAAACGCGTCGCCGCCGTGTCCGGGGCGGTGCCCGAGTTCCAGCGCTGCC
GCAGAGGCGGCGACGGCAGTGGCGGCAGCGGCGGCGGCAGCGATTACAGC
GGTGGCAGCGGGCAGCCGTCGATGGCGCTCTTCACCGCAATAGACAATTG
CGACGCGCAGGAGGTTTTGGCGCTCCTCCGCGACGGTGTCGACGTCAATG
CGGTCTACGAGAGGCCGCCGCCGCCAACGGCGATGGCGCAGCAGCAAGGG
CCGCCGCCGCCACCACCGTCGCCATCGCTTTCGTTATCGCTGCCTGCTGA
CGCCGCTGCCGCCGCCGCCACTGCTGGCGCCGCCATCGCTGCCAAGGACC
GGGGTGGCTCCGTTAGCGGGGAGGATGAGGACGGCTTCGGCGCGCCACGG
ATCCGGACGGGCATCGACGGCTTTGCCGAGGTATGGGGCACGACGCCGCT
GCACGCCGCCGCCGCGCACCTGTCGGGTGATTTCTTGCCCATCATCGTGC
TGCTGCTCCACAGCGGCGCCTCGACGACGGCGCTCGACGCGGACGGCCGC
ACGCCGTTGCAGGTGACGTCCAACCCGATCATCGCCGCGGTTTTGTCGGA
GCATGCCGTCCGCCTCGCCGGTAGAAACGGCGGCGTCGGCGGTAGGGTTG
GCGGCAGCGGCAGTGGTGGCGGCGGCAGCGGCAAGATCGGCGGCGGCAGC
GGAGGCAGCAATGGAGGAATAAGGGAAAATGGCGGTGACGACGGTGGCAC
GGGGATCGGGTGGTCGAGACGAGAGAAGGCCTGGGGCTTTGTTGTCTGCA
GCGCCGCCATAGCCGACGCATCGACGGCGCCGCTCTGGCGGTACGTCGTG
GTTCGGACGGCACAGGCGCGGCTCGTAGCCCTGGCACCGCTCTTGGCGTG
CGACGACGATTTCGTGAGCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1169:1508..3929-

>mRNA_P-wetherbeei_contig1169.1.1 ID=mRNA_P-wetherbeei_contig1169.1.1|Name=mRNA_P-wetherbeei_contig1169.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1524bp|location=Sequence derived from alignment at P-wetherbeei_contig1169:1508..3929- (Phaeothamnion wetherbeei SAG_119_79)
TCCCGCTCGGAACGGCTGCTGCAGGCGCGCGCCCATTACGACGTCTTCCT
GCTCAGCGTCACCATGGGGGCGTGGGCGGGCCACACGCGGGAGCGGGGTC
ACATGTGGCGGCTGGCTGGACGAATCGTGCGAGTGTGGCGGGGATGGGCG
GCCGTGCACCGCTGCGTCGCCGGCAGCAAGCAGGGCCTGCGTATGCGGCT
GCGTCTGATCCGCCTCGACCGCTGCATCTCCCACATGCGGGCGTACACGC
GAGTGCGCCGCCTGCTGGGCACGCTCAACATGGCGCGGCTGCTGCAAACG
CGGCACACGGGGGCGGCGCTGCAGATTTGCTACACGGCGACGCAGCAGAC
GACGCAGCTCGTCATGACGCTGGCGTGGCAGGCCTGGCGCCGGCTCGCCA
CACAGCGCCGCCGGTGGAAGTGGCTCCTATATGCGCACCGCCGGATCGAG
ACGCGACACCTTCTCCGCACCGTCCTCAACGCCTGGGCAGCCCTGCCCGG
CCTGCGGAGCCGCCGGGGAACCCCGGCAGCCCGCGGCGACGGCAGCAGCA
TCGGCTCCGCTTGCAGCGGCGGCGGGCCCGCCGGGGCGACATTGTCGCTC
CACGCCAGCCTTCCGTTTCCGGTGTACGACCGGCTGACGGATGCCATCGG
CCGTGGACAGGTGCCCACAGAGCAGCTGTTGCAGGACATGCGCGACTCGG
GGGTCATCATGCAACAAACGTCACGGTGGGCGCTGAAACGCGTCGCCGCC
GTGTCCGGGGCGGTGCCCGAGTTCCAGCGCTGCCGCAGAGGCGGCGACGG
CAGTGGCGGCAGCGGCGGCGGCAGCGATTACAGCGGTGGCAGCGGGCAGC
CGTCGATGGCGCTCTTCACCGCAATAGACAATTGCGACGCGCAGGAGGTT
TTGGCGCTCCTCCGCGACGGTGTCGACGTCAATGCGGTCTACGAGAGGCC
GCCGCCGCCAACGGCGATGGCGCAGCAGCAAGGGCCGCCGCCGCCACCAC
CGTCGCCATCGCTTTCGTTATCGCTGCCTGCTGACGCCGCTGCCGCCGCC
GCCACTGCTGGCGCCGCCATCGCTGCCAAGGACCGGGGTGGCTCCGTTAG
CGGGGAGGATGAGGACGGCTTCGGCGCGCCACGGATCCGGACGGGCATCG
ACGGCTTTGCCGAGGTATGGGGCACGACGCCGCTGCACGCCGCCGCCGCG
CACCTGTCGGGTGATTTCTTGCCCATCATCGTGCTGCTGCTCCACAGCGG
CGCCTCGACGACGGCGCTCGACGCGGACGGCCGCACGCCGTTGCAGGTGA
CGTCCAACCCGATCATCGCCGCGGTTTTGTCGGAGCATGCCGTCCGCCTC
GCCGGTAGAAACGGCGGCGTCGGCGAGAAGGCCTGGGGCTTTGTTGTCTG
CAGCGCCGCCATAGCCGACGCATCGACGGCGCCGCTCTGGCGGTACGTCG
TGGTTCGGACGGCACAGGCGCGGCTCGTAGCCCTGGCACCGCTCTTGGCG
TGCGACGACGATTTCGTGAGCGAC
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