mRNA_P-wetherbeei_contig11688.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11688.1.1
Unique NamemRNA_P-wetherbeei_contig11688.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11688.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11688contigP-wetherbeei_contig11688:78..305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3641.EOX91055
PFAMsAldose_epim
Model size228
Max annot lvl35493|Streptophyta
KEGG rclassRC00563
KEGG koko:K01792
KEGG ReactionR02739
KEGG Pathwayko00010,ko01100,ko01110,ko01120,ko01130,map00010,map01100,map01110,map01120,map01130
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.03e-05
EggNOG OGsCOG0676@1|root,KOG1594@2759|Eukaryota,37KPR@33090|Viridiplantae,3GD5F@35493|Streptophyta
Ec32 ortholog descriptionconserved carbohydrate binding protein
Ec32 orthologEc-01_009180.1
EC5.1.3.15
DescriptionBelongs to the glucose-6-phosphate 1-epimerase family
Cds size228
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185922.2969744-CDS-P-wetherbeei_contig11688:77..3051683185922.2969744-CDS-P-wetherbeei_contig11688:77..305Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11688 78..305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11688.1.1prot_P-wetherbeei_contig11688.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11688 78..305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11688.1.1

>prot_P-wetherbeei_contig11688.1.1 ID=prot_P-wetherbeei_contig11688.1.1|Name=mRNA_P-wetherbeei_contig11688.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
MSTSEETIFQAGFENAAGITTDMSGPIPKILLSTGSGSEAEIYPLGACVT
AFKVLIPHFQRFADATVDRNSPVTLV
back to top

mRNA from alignment at P-wetherbeei_contig11688:78..305-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11688.1.1 ID=mRNA_P-wetherbeei_contig11688.1.1|Name=mRNA_P-wetherbeei_contig11688.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig11688:78..305- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCAACTTCGGAGGAGACGATTTTCCAGGCAGGCTTCGAGAATGCTGC
AGGAATCACCACCGACATGAGCGGCCCCATTCCGAAGATCCTGCTGAGCA
CCGGCAGCGGCTCGGAGGCCGAGATCTATCCGCTGGGAGCATGCGTCACC
GCTTTTAAGGTGCTAATCCCACATTTCCAACGATTTGCTGACGCTACAGT
GGATCGCAACTCTCCTGTGACGCTCGTT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11688:78..305-

>mRNA_P-wetherbeei_contig11688.1.1 ID=mRNA_P-wetherbeei_contig11688.1.1|Name=mRNA_P-wetherbeei_contig11688.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig11688:78..305- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCAACTTCGGAGGAGACGATTTTCCAGGCAGGCTTCGAGAATGCTGC
AGGAATCACCACCGACATGAGCGGCCCCATTCCGAAGATCCTGCTGAGCA
CCGGCAGCGGCTCGGAGGCCGAGATCTATCCGCTGGGAGCATGCGTCACC
GCTTTTAAGGTGCTAATCCCACATTTCCAACGATTTGCTGACGCTACAGT
GGATCGCAACTCTCCTGTGACGCTCGTT
back to top