mRNA_P-wetherbeei_contig11674.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11674.2.1
Unique NamemRNA_P-wetherbeei_contig11674.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11674.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11674contigP-wetherbeei_contig11674:926..1458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size522
Hectar predicted targeting categoryother localisation
Exons2
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185921.8600204-UTR-P-wetherbeei_contig11674:925..10011683185921.8600204-UTR-P-wetherbeei_contig11674:925..1001Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11674 926..1001 -
1683185921.8891666-UTR-P-wetherbeei_contig11674:1402..14581683185921.8891666-UTR-P-wetherbeei_contig11674:1402..1458Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11674 1403..1458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185921.8697374-CDS-P-wetherbeei_contig11674:1001..11571683185921.8697374-CDS-P-wetherbeei_contig11674:1001..1157Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11674 1002..1157 -
1683185921.8798816-CDS-P-wetherbeei_contig11674:1168..14021683185921.8798816-CDS-P-wetherbeei_contig11674:1168..1402Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11674 1169..1402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11674.2.1prot_P-wetherbeei_contig11674.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11674 1002..1402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11674.2.1

>prot_P-wetherbeei_contig11674.2.1 ID=prot_P-wetherbeei_contig11674.2.1|Name=mRNA_P-wetherbeei_contig11674.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MKSPRAELTAAGRRPQQTGRVPRTTPRLRYGTTANTDRRGRRLSARRKPA
ACSTRSPAMSAASMRARREQTETGCAAPCSLCHNVSVFPLSQTPPAFAVP
AVPRRPISLTNHDEGVFEPRRRPAITGTS*
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mRNA from alignment at P-wetherbeei_contig11674:926..1458-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11674.2.1 ID=mRNA_P-wetherbeei_contig11674.2.1|Name=mRNA_P-wetherbeei_contig11674.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=533bp|location=Sequence derived from alignment at P-wetherbeei_contig11674:926..1458- (Phaeothamnion wetherbeei SAG_119_79)
GTTCCGTTACAGGCGTCTAGTGTACTCATGGTTGCGTGGATCCATTTGTA
CAGCAAATGAAGAGTCCGCGAGCGGAATTGACAGCGGCCGGCCGGCGGCC
GCAACAGACAGGGCGGGTTCCACGCACCACTCCACGGCTCCGTTACGGCA
CCACTGCGAATACTGACCGAAGAGGGCGCCGCCTATCCGCCCGCCGAAAG
CCAGCCGCTTGCTCCACCCGCAGCCCCGCCATGAGTGCTGCCAGTATGCG
AGCAAGGCGCGAACAAACGGAAACCGGGTGCGCCGCTCCGGCAGCAGTCA
GTGTTCTCTTTGTCACAATGTATCGGTCTTCCCCCTTTCGCAAACGCCGC
CGGCATTTGCTGTTCCAGCTGTGCCGCGACGCCCAATTTCCCTCACCAAC
CACGACGAGGGTGTCTTCGAACCGCGCCGGCGGCCGGCAATCACTGGGAC
ATCGTGAGTCACCACTCGCGCCGGGAAGATCCGACACCAGCACGGTGGCC
CTGAGTTTGACTGCCGTAGCAGCCGCTGCCATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11674:926..1458-

>mRNA_P-wetherbeei_contig11674.2.1 ID=mRNA_P-wetherbeei_contig11674.2.1|Name=mRNA_P-wetherbeei_contig11674.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig11674:926..1458- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAGTCCGCGAGCGGAATTGACAGCGGCCGGCCGGCGGCCGCAACA
GACAGGGCGGGTTCCACGCACCACTCCACGGCTCCGTTACGGCACCACTG
CGAATACTGACCGAAGAGGGCGCCGCCTATCCGCCCGCCGAAAGCCAGCC
GCTTGCTCCACCCGCAGCCCCGCCATGAGTGCTGCCAGTATGCGAGCAAG
GCGCGAACAAACGGAAACCGGGTGCGCCGCTCCGTGTTCTCTTTGTCACA
ATGTATCGGTCTTCCCCCTTTCGCAAACGCCGCCGGCATTTGCTGTTCCA
GCTGTGCCGCGACGCCCAATTTCCCTCACCAACCACGACGAGGGTGTCTT
CGAACCGCGCCGGCGGCCGGCAATCACTGGGACATCGTGA
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