mRNA_P-wetherbeei_contig1165.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1165.2.1
Unique NamemRNA_P-wetherbeei_contig1165.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1165.2.1 vs. uniprot
Match: V4SIZ9_CITCL (Oxidoreductase-like domain-containing protein n=4 Tax=Citrus TaxID=2706 RepID=V4SIZ9_CITCL)

HSP 1 Score: 53.1 bits (126), Expect = 2.630e-5
Identity = 23/61 (37.70%), Postives = 38/61 (62.30%), Query Frame = 2 
Query:  344 REPASEEGLSAVKGHQERSTHPTTLAKPQEPDASACCGNGCSKCVWIMYWAELNAWEAIQK 526
            REP  EE +  +K  +++ST       P++P+   CCG+GC +CVW +Y+ EL A++ + K
Sbjct:   77 REPVKEENIK-IKEEEQKSTK-MLPPPPEKPEPGDCCGSGCVRCVWDVYYEELEAYDKLYK 135
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1165.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
V4SIZ9_CITCL2.630e-537.70Oxidoreductase-like domain-containing protein n=4 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1165contigP-wetherbeei_contig1165:6329..7062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2711.XP_006466886.1
PFAMsOxidored-like
Model size734
Max annot lvl35493|Streptophyta
Hectar predicted targeting categorymitochondrion
Exons1
Evalue7.31e-07
EggNOG OGsKOG4690@1|root,KOG4690@2759|Eukaryota,37WSP@33090|Viridiplantae,3GM17@35493|Streptophyta
Ec32 ortholog descriptionOxidoreductase-like, N-terminal
Ec32 orthologEc-12_005000.1
DescriptionOxidoreductase-like protein, N-terminal
Cds size420
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185920.4628391-UTR-P-wetherbeei_contig1165:6328..64701683185920.4628391-UTR-P-wetherbeei_contig1165:6328..6470Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1165 6329..6470 +
1683185920.4824464-UTR-P-wetherbeei_contig1165:6890..70621683185920.4824464-UTR-P-wetherbeei_contig1165:6890..7062Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1165 6891..7062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185920.4735155-CDS-P-wetherbeei_contig1165:6470..68901683185920.4735155-CDS-P-wetherbeei_contig1165:6470..6890Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1165 6471..6890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1165.2.1prot_P-wetherbeei_contig1165.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1165 6471..6890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1165.2.1

>prot_P-wetherbeei_contig1165.2.1 ID=prot_P-wetherbeei_contig1165.2.1|Name=mRNA_P-wetherbeei_contig1165.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
MTTKAFGAARLCRRQLWKVGKRRLTSTAGEDDQSRLTASMDAFYELEQRI
SAQIAGSVSPPLKPAIPREPASEEGLSAVKGHQERSTHPTTLAKPQEPDA
SACCGNGCSKCVWIMYWAELNAWEAIQKQVARREGRKQS*
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mRNA from alignment at P-wetherbeei_contig1165:6329..7062+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1165.2.1 ID=mRNA_P-wetherbeei_contig1165.2.1|Name=mRNA_P-wetherbeei_contig1165.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=734bp|location=Sequence derived from alignment at P-wetherbeei_contig1165:6329..7062+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCAAAGGTAACTCTAGTTCCGCCCTAGCGTCGATCTCTACTCTCCCCT
TGCTTTCCTTTCTGAGTTGCTCGCGATTTCTCGATGTGGCGGCACGCCTC
ACTTCGACGGCAGCGCGCTTTAAGCCAAGATCGCTGCTTGCAATGACGAC
TAAAGCGTTTGGCGCTGCAAGGCTTTGTCGACGGCAGCTATGGAAGGTGG
GAAAGAGACGACTCACTTCGACAGCGGGAGAAGACGACCAATCTCGTTTG
ACAGCAAGCATGGACGCTTTTTATGAACTTGAGCAGCGAATCTCTGCGCA
GATCGCAGGGAGCGTCAGCCCGCCGCTGAAGCCGGCGATTCCACGCGAGC
CAGCTTCAGAGGAGGGGCTCTCCGCCGTCAAGGGTCACCAAGAAAGAAGC
ACCCATCCGACAACGTTGGCGAAACCACAAGAGCCTGATGCTAGTGCCTG
CTGCGGGAATGGATGCAGTAAGTGTGTATGGATCATGTATTGGGCGGAGC
TGAACGCATGGGAGGCGATCCAGAAGCAAGTAGCTCGCCGCGAAGGCAGA
AAGCAAAGTTAAATGACCTCACTTTTGTCAGTCCATATTGTTGTTGGAGC
TATCAATGTCGTTTTTTTGAATAAGCGACCGGGACGCTTTCAACCTGTCG
GCAGATACTTTTGGGGGGACGATGAAGTAGACCTGTACTGAGACATTAGG
ACGAAGGATGTAGCAACAAACAGATTGTGATGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1165:6329..7062+

>mRNA_P-wetherbeei_contig1165.2.1 ID=mRNA_P-wetherbeei_contig1165.2.1|Name=mRNA_P-wetherbeei_contig1165.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig1165:6329..7062+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGACTAAAGCGTTTGGCGCTGCAAGGCTTTGTCGACGGCAGCTATG
GAAGGTGGGAAAGAGACGACTCACTTCGACAGCGGGAGAAGACGACCAAT
CTCGTTTGACAGCAAGCATGGACGCTTTTTATGAACTTGAGCAGCGAATC
TCTGCGCAGATCGCAGGGAGCGTCAGCCCGCCGCTGAAGCCGGCGATTCC
ACGCGAGCCAGCTTCAGAGGAGGGGCTCTCCGCCGTCAAGGGTCACCAAG
AAAGAAGCACCCATCCGACAACGTTGGCGAAACCACAAGAGCCTGATGCT
AGTGCCTGCTGCGGGAATGGATGCAGTAAGTGTGTATGGATCATGTATTG
GGCGGAGCTGAACGCATGGGAGGCGATCCAGAAGCAAGTAGCTCGCCGCG
AAGGCAGAAAGCAAAGTTAA
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