mRNA_P-wetherbeei_contig1165.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1165.1.1
Unique NamemRNA_P-wetherbeei_contig1165.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1165.1.1 vs. uniprot
Match: A0A835YV38_9STRA (Tubulin-tyrosine ligase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV38_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.650e-14
Identity = 102/408 (25.00%), Postives = 157/408 (38.48%), Query Frame = 1 
Query:   43 DALRWSDVNWLLVLESSLEAPFYFIRSGLIRSDLLSRY--SGPHMPPTFLVRTFAALRRILLRPRME--GILWTLKPASKRRAGSFTFD-----THELLIRPNFPRQPHPMSSMANSNGGNGGVERPGNTSSDVFATMRDGLPMILQAQLQVLPFYPERALSA-GADFPAAAAAAVESLERSKTSPCSSFRVRALVLAAGRLKVYCYKDFRVLISAGAAMPSLQSPGEGPVGLSTSSLPSLSPGEAPRQWEGAQGSFKSCTAAGTESHTPRSGAPAALPEDFTCNLDLRQCRQLG---CGWGRISIDGAAARASIIDQIHEITTHVFVSLLAAATSQHFFATATCYELFALDFAVD-REAKVWLLEAHANPAVTDFGRRYGELFRGSPLRTPPTPDEWRLLLESQAGG 1224
            D  +W  V W  V   +  APF F+RSGLIR DLL +     P +P T+ + +   L+ +L   +++    +W LKPA    A    F      T ELL                                +D+     DG P +LQ  + + P  P  A +  G    +    AV + + +  +    + +R LVLA GRLKVY  +   VL+   A  P  Q P                                S   A   +H       AA P  +   L    C  LG   CG   + +    A+A+   +I        +   A    + F   A CYEL+  DF +D    ++ LLEA+ +P++  F + Y ++   SPL+    P+++ L+ +  A G
Sbjct:    3 DRPQWKSVKWNAVFNGACTAPFLFMRSGLIRKDLLHQILAGDPCVPRTYTLHSAGELQALLSTAQLQQHSHVWVLKPARSSNANGIRFIDVRAITDELL--------------------------------ADLAKGWSDGAPKLLQEYI-IPPLLPGPAPAEHGPPGESLRGDAVATGDGAAAAGGHKWHLRVLVLAVGRLKVYVRRGMAVLV---APEPLPQPP--------------------------------SSDLASAHAHVTNRAHNAAHPR-YRAAL---HCLALGGSRCGAALLPVASIRAQAA---RICGYAFAALMRAPAPGQRRQFLPLANCYELYGFDFMLDGASGQLKLLEANPDPSLAMFSQTYADVLPASPLQQ--VPEDFDLVYDFDADG 333
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BLAST of mRNA_P-wetherbeei_contig1165.1.1 vs. uniprot
Match: A0A024UK71_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UK71_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.060e-8
Identity = 58/216 (26.85%), Postives = 84/216 (38.89%), Query Frame = 1 
Query:   52 RWSDVNWLLVLESSLEAPFYFIRSGLIRSDLLSRYSGPHMPPTFLVRTFAALRRILLRPRME-------GILWTLKPASKRRAGSFTFDTHELLIRPNFPRQPHPMSSMANSNGGNGGVERPGNTSSDVFATMRDGLPMILQAQLQVLPFYPERALSAGADFPAAAAAAVESLERSKTSPCSSFRVRALVLAAGRLKVYCYKDFRVLISAGAAMPS 678
            +W D+ W  VLE S  A  YF+RSGLIR DLL  Y+  +MP TF+V++  ++  I+  P ME         +W LK +    A    F          F R+                       +S +   ++DG   ++Q  +Q   F   +                             F VR LVLA G L VY Y   RVL+++    P+
Sbjct:    9 KWRDIPWADVLEKSAHADKYFMRSGLIRKDLLPLYAAEYMPKTFVVKSMDSINEII--PLMEEEDKHASNDVWVLKLSDSSNAYGIHF----------FHRK----------------------DASSLAYIVQDGQTRVVQKNVQSALFNGRK-----------------------------FHVRVLVLAVGHLDVYVYDRSRVLVASAPYSPT 161
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BLAST of mRNA_P-wetherbeei_contig1165.1.1 vs. uniprot
Match: W4G987_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G987_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.370e-7
Identity = 58/208 (27.88%), Postives = 81/208 (38.94%), Query Frame = 1 
Query:   52 RWSDVNWLLVLESSLEAPFYFIRSGLIRSDLLSRYSGPHMPPTFLVRTFAALRRILLRPRME-----GILWTLKPASKRRAGSFTFDTHELLIRPNFPRQPHPMSSMANSNGGNGGVERPGNTSSDVFATMRDGLPMILQAQLQVLPFYPERALSAGADFPAAAAAAVESLERSKTSPCSSFRVRALVLAAGRLKVYCYKDFRVLISA 660
            +W D+ W  VLE ++ A  YF+RSGLIR DLL  Y+  HMP TF+V +   + +I+     E       LW LK +    A    F          F R    ++SMA                           P++   Q +V+  Y +  L  G                        F +R LVLA G L VY Y   RVL+++
Sbjct:    9 KWRDIPWQEVLEKNVHADKYFMRSGLIRKDLLPLYAAEHMPRTFVVSSMEDVNQIIHFMEEEDKCSANDLWVLKLSDSSNAFGIHF----------FHRTD--VASMA---------------------------PILGDGQTRVVQKYVQSTLLDG----------------------KKFHLRVLVLAVGHLDVYVYDRCRVLVAS 155
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BLAST of mRNA_P-wetherbeei_contig1165.1.1 vs. uniprot
Match: A0A6G0X5B5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X5B5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.230e-5
Identity = 52/209 (24.88%), Postives = 82/209 (39.23%), Query Frame = 1 
Query:   52 RWSDVNWLLVLESSLEAPFYFIRSGLIRSDLLSRYSGPHMPPTFLVRTFAALRRILLRPRMEGI------LWTLKPASKRRAGSFTFDTHELLIRPNFPRQPHPMSSMANSNGGNGGVERPGNTSSDVFATMRDGLPMILQAQLQVLPFYPERALSAGADFPAAAAAAVESLERSKTSPCSSFRVRALVLAAGRLKVYCYKDFRVLISA 660
            +W ++ W  VL+    A  YF+RSGLIR DLL  YS   MPPT +V +      +L + + + I      LW LK +    A    +  H   ++                             ++ V + + DG   +LQ  +Q +    ++                             F +RALVLA G L VY Y++ RVL+++
Sbjct:    9 KWREIPWNDVLKQKCSADKYFMRSGLIRKDLLPVYSSEFMPPTHVVSSVEEFDAVLDKIKEDIIAVRADDLWVLKLSDSSNA----YGIHFFHLK----------------------------ETTSVRSLLLDGQTRVLQKYVQPMLIDGKK-----------------------------FHIRALVLAVGHLDVYVYENVRVLLAS 156
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1165.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YV38_9STRA4.650e-1425.00Tubulin-tyrosine ligase family-domain-containing p... [more]
A0A024UK71_9STRA3.060e-826.85Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4G987_9STRA4.370e-727.88Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A6G0X5B5_9STRA1.230e-524.88Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1165contigP-wetherbeei_contig1165:4431..6022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008864779.1
PFAMsTTL
Model size1281
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.21e-15
EggNOG OGsKOG2157@1|root,KOG2157@2759|Eukaryota
Descriptionprotein polyglycylation
Cds size1236
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185920.510014-UTR-P-wetherbeei_contig1165:4430..44511683185920.510014-UTR-P-wetherbeei_contig1165:4430..4451Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1165 4431..4451 +
1683185920.5463903-UTR-P-wetherbeei_contig1165:5998..60221683185920.5463903-UTR-P-wetherbeei_contig1165:5998..6022Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1165 5999..6022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185920.519882-CDS-P-wetherbeei_contig1165:4451..46651683185920.519882-CDS-P-wetherbeei_contig1165:4451..4665Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1165 4452..4665 +
1683185920.5287824-CDS-P-wetherbeei_contig1165:4759..54811683185920.5287824-CDS-P-wetherbeei_contig1165:4759..5481Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1165 4760..5481 +
1683185920.5378804-CDS-P-wetherbeei_contig1165:5698..59981683185920.5378804-CDS-P-wetherbeei_contig1165:5698..5998Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1165 5699..5998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1165.1.1prot_P-wetherbeei_contig1165.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1165 4452..5998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1165.1.1

>prot_P-wetherbeei_contig1165.1.1 ID=prot_P-wetherbeei_contig1165.1.1|Name=mRNA_P-wetherbeei_contig1165.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=412bp
MDAAGECDALRWSDVNWLLVLESSLEAPFYFIRSGLIRSDLLSRYSGPHM
PPTFLVRTFAALRRILLRPRMEGILWTLKPASKRRAGSFTFDTHELLIRP
NFPRQPHPMSSMANSNGGNGGVERPGNTSSDVFATMRDGLPMILQAQLQV
LPFYPERALSAGADFPAAAAAAVESLERSKTSPCSSFRVRALVLAAGRLK
VYCYKDFRVLISAGAAMPSLQSPGEGPVGLSTSSLPSLSPGEAPRQWEGA
QGSFKSCTAAGTESHTPRSGAPAALPEDFTCNLDLRQCRQLGCGWGRISI
DGAAARASIIDQIHEITTHVFVSLLAAATSQHFFATATCYELFALDFAVD
REAKVWLLEAHANPAVTDFGRRYGELFRGSPLRTPPTPDEWRLLLESQAG
GAAAARRGPSG*
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mRNA from alignment at P-wetherbeei_contig1165:4431..6022+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1165.1.1 ID=mRNA_P-wetherbeei_contig1165.1.1|Name=mRNA_P-wetherbeei_contig1165.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1592bp|location=Sequence derived from alignment at P-wetherbeei_contig1165:4431..6022+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAACGGGGTTCAAGACGAGATGGACGCTGCCGGCGAATGTGACGCATT
AAGGTGGTCGGACGTGAACTGGCTGCTCGTGCTCGAATCGAGCCTTGAAG
CGCCATTTTATTTCATTCGTTCGGGGCTCATCAGGAGCGACCTTCTCTCG
CGCTATTCAGGACCGCACATGCCGCCGACCTTCCTGGTCAGGACTTTTGC
AGCCCTACGGCGCATTCTGCTGCGACCTAGGATGGGTAAGCGAGCCAATC
TTTTGTTAGTGCATCCCAATCACACGTCAAACTAAATGTGCTCTCGCTGT
CTCGGATAACCTTCGCTCTGCGTCAACAGAGGGTATCTTGTGGACGCTGA
AGCCAGCCTCTAAGCGTCGTGCTGGTTCATTTACGTTTGATACGCATGAG
CTGCTCATTCGACCAAACTTTCCACGGCAGCCGCATCCGATGAGCAGCAT
GGCAAACTCAAACGGCGGCAACGGCGGGGTGGAGCGGCCGGGGAATACAT
CCTCCGATGTTTTTGCTACCATGAGAGACGGCCTCCCAATGATTCTTCAG
GCCCAACTCCAAGTGCTGCCCTTCTATCCAGAGAGGGCCTTATCAGCAGG
AGCAGACTTCCCAGCAGCAGCAGCAGCAGCCGTCGAATCCCTGGAGCGCA
GCAAGACCTCTCCGTGCAGCAGCTTCCGCGTCCGGGCTCTGGTACTCGCG
GCTGGCCGGTTAAAAGTGTACTGTTACAAAGATTTCCGAGTTTTAATCAG
CGCCGGCGCTGCGATGCCGTCGTTGCAGTCCCCGGGTGAAGGGCCGGTGG
GACTTTCGACTTCGTCGCTGCCCTCACTATCGCCAGGAGAGGCACCTCGT
CAATGGGAGGGCGCGCAGGGCAGCTTCAAATCTTGCACTGCCGCTGGAAC
GGAAAGCCACACGCCGCGTTCGGGAGCGCCGGCAGCCCTGCCAGAGGATT
TTACTTGCAATCTGGACCTAAGGCAGTGCCGCCAGCTGGGCTGTGGCTGG
GGAAGAATCAGCATCGACGGCGCTGCAGCACGGGCTAGTATCATTGACCA
GGTGGGTACAGACACAGAACCGGGCTAGCTGCTTCGCTAGGGACTCAAGC
GCGACTACACTATTGGCATTCTTATGGCAAGAGACTACAAATTTTCTTCC
AATCTGATTTAGAAACCATTCGAAAACCTGAGCAGATCTGTGAAGGAGTC
TTCAGCTAGGGCTCCCATGAACTGACGATTGCTCCGTCCCTGCTGCCCTT
CCTTTGTGCCGGGCTCAGATCCACGAGATCACGACACACGTCTTTGTGTC
CCTTCTGGCGGCGGCAACCAGCCAGCACTTCTTCGCCACCGCCACCTGCT
ATGAGCTTTTCGCGCTCGATTTTGCCGTCGATCGCGAAGCCAAAGTGTGG
CTGCTCGAAGCCCACGCCAACCCAGCGGTGACCGATTTCGGACGGCGCTA
CGGCGAATTGTTCCGCGGGTCGCCGCTGCGGACGCCGCCGACGCCCGACG
AGTGGCGCCTGCTTCTAGAGTCACAGGCAGGAGGGGCGGCGGCGGCGCGC
CGCGGGCCGTCGGGATAGGTTTTAAGATAAAATTAAACGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1165:4431..6022+

>mRNA_P-wetherbeei_contig1165.1.1 ID=mRNA_P-wetherbeei_contig1165.1.1|Name=mRNA_P-wetherbeei_contig1165.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1236bp|location=Sequence derived from alignment at P-wetherbeei_contig1165:4431..6022+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGCTGCCGGCGAATGTGACGCATTAAGGTGGTCGGACGTGAACTG
GCTGCTCGTGCTCGAATCGAGCCTTGAAGCGCCATTTTATTTCATTCGTT
CGGGGCTCATCAGGAGCGACCTTCTCTCGCGCTATTCAGGACCGCACATG
CCGCCGACCTTCCTGGTCAGGACTTTTGCAGCCCTACGGCGCATTCTGCT
GCGACCTAGGATGGAGGGTATCTTGTGGACGCTGAAGCCAGCCTCTAAGC
GTCGTGCTGGTTCATTTACGTTTGATACGCATGAGCTGCTCATTCGACCA
AACTTTCCACGGCAGCCGCATCCGATGAGCAGCATGGCAAACTCAAACGG
CGGCAACGGCGGGGTGGAGCGGCCGGGGAATACATCCTCCGATGTTTTTG
CTACCATGAGAGACGGCCTCCCAATGATTCTTCAGGCCCAACTCCAAGTG
CTGCCCTTCTATCCAGAGAGGGCCTTATCAGCAGGAGCAGACTTCCCAGC
AGCAGCAGCAGCAGCCGTCGAATCCCTGGAGCGCAGCAAGACCTCTCCGT
GCAGCAGCTTCCGCGTCCGGGCTCTGGTACTCGCGGCTGGCCGGTTAAAA
GTGTACTGTTACAAAGATTTCCGAGTTTTAATCAGCGCCGGCGCTGCGAT
GCCGTCGTTGCAGTCCCCGGGTGAAGGGCCGGTGGGACTTTCGACTTCGT
CGCTGCCCTCACTATCGCCAGGAGAGGCACCTCGTCAATGGGAGGGCGCG
CAGGGCAGCTTCAAATCTTGCACTGCCGCTGGAACGGAAAGCCACACGCC
GCGTTCGGGAGCGCCGGCAGCCCTGCCAGAGGATTTTACTTGCAATCTGG
ACCTAAGGCAGTGCCGCCAGCTGGGCTGTGGCTGGGGAAGAATCAGCATC
GACGGCGCTGCAGCACGGGCTAGTATCATTGACCAGATCCACGAGATCAC
GACACACGTCTTTGTGTCCCTTCTGGCGGCGGCAACCAGCCAGCACTTCT
TCGCCACCGCCACCTGCTATGAGCTTTTCGCGCTCGATTTTGCCGTCGAT
CGCGAAGCCAAAGTGTGGCTGCTCGAAGCCCACGCCAACCCAGCGGTGAC
CGATTTCGGACGGCGCTACGGCGAATTGTTCCGCGGGTCGCCGCTGCGGA
CGCCGCCGACGCCCGACGAGTGGCGCCTGCTTCTAGAGTCACAGGCAGGA
GGGGCGGCGGCGGCGCGCCGCGGGCCGTCGGGATAG
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