mRNA_P-wetherbeei_contig11648.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11648.1.1
Unique NamemRNA_P-wetherbeei_contig11648.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11648.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11648contigP-wetherbeei_contig11648:8..1946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1625
Hectar predicted targeting categoryother localisation
Exons2
Cds size1440
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185920.3313673-UTR-P-wetherbeei_contig11648:7..281683185920.3313673-UTR-P-wetherbeei_contig11648:7..28Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11648 8..28 -
1683185920.373126-UTR-P-wetherbeei_contig11648:1782..19461683185920.373126-UTR-P-wetherbeei_contig11648:1782..1946Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11648 1783..1946 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185920.3442662-CDS-P-wetherbeei_contig11648:28..3791683185920.3442662-CDS-P-wetherbeei_contig11648:28..379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11648 29..379 -
1683185920.3564603-CDS-P-wetherbeei_contig11648:693..17821683185920.3564603-CDS-P-wetherbeei_contig11648:693..1782Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11648 694..1782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11648.1.1prot_P-wetherbeei_contig11648.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11648 29..1782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11648.1.1

>prot_P-wetherbeei_contig11648.1.1 ID=prot_P-wetherbeei_contig11648.1.1|Name=mRNA_P-wetherbeei_contig11648.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=480bp
MHYHRESREPSTRYEEAVLGTLLLQRPEKQGEETRERVAKISEATRGIGD
TMPSSTSSTHQSLSQHHANGLSWASQVHIVRTSPRASERLRRSARKLQSA
ESLADVFFPAALLSASDYADPAAPEEEAFAQKKQDREDAVDASNTGNALA
PLVPTDAEIDRWTVCKGRGADGERQALVLRGAPGTWKHHNAASYAFLLMG
QCPWRDIILGAFPVADAPIHTHAFDYLDAADLVATSLVSRDLHPAMHLLF
ERETAALARRFGSGVGAVDFSASFGHGNGHGTNGHGSGFSGAGKRPGPAA
TPAAAAAAAAAKVASAAGPLQQPELLHLRTRTRKLSLFWGTPERAVEASL
HASALRVHGSTSYVYACCARLSLRDNLVADLTPLCEPWRVDISHELASLA
PPAGNAGSGGGGGGGGEDGSSFCRFFSLPPAAAPLLAARLKRAAAADDDA
AVPRLRMAVALLNCAAERGDHVFVMQSSA*
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mRNA from alignment at P-wetherbeei_contig11648:8..1946-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11648.1.1 ID=mRNA_P-wetherbeei_contig11648.1.1|Name=mRNA_P-wetherbeei_contig11648.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1939bp|location=Sequence derived from alignment at P-wetherbeei_contig11648:8..1946- (Phaeothamnion wetherbeei SAG_119_79)
TTAATGGTATCGCTGATCTTGACTAACGACTAGTCGACTTATCAATAATC
GAAACTAACGGTATCGGTCCGGGGTGTGCAGACCTGTGCCACACTTCTTG
CGTCCATAATCGTTCTCCTGGCGCCATACCAACATACCAACCGATCGACA
GAAATTTCGCAGCCATGCACTACCACCGCGAGAGTAGAGAGCCCAGCACG
AGATATGAGGAAGCGGTTCTAGGAACGCTTTTGCTTCAGAGGCCAGAGAA
GCAGGGGGAGGAGACAAGAGAAAGAGTTGCAAAGATATCTGAAGCGACGA
GGGGAATAGGAGACACCATGCCTTCGTCAACTTCGTCAACGCACCAGTCG
CTATCCCAGCACCACGCGAACGGCTTGTCGTGGGCGAGCCAGGTACACAT
AGTGAGAACGAGCCCGAGAGCGTCTGAGCGTCTGCGACGTTCCGCCAGGA
AGCTGCAGAGCGCCGAGAGCCTCGCGGATGTTTTTTTCCCGGCGGCCCTG
CTGTCGGCCAGCGACTATGCAGACCCGGCGGCTCCGGAGGAGGAAGCCTT
TGCGCAGAAGAAGCAAGACCGTGAAGATGCTGTCGATGCGAGCAACACGG
GCAACGCGCTGGCCCCGCTTGTACCCACCGACGCGGAGATCGACAGGTGG
ACCGTCTGCAAGGGCCGCGGCGCGGACGGCGAGCGCCAGGCGCTCGTCCT
GCGCGGCGCGCCTGGCACGTGGAAGCATCACAATGCGGCGAGCTACGCCT
TCCTGCTCATGGGGCAGTGCCCGTGGCGGGACATCATCCTCGGCGCGTTC
CCCGTCGCCGACGCGCCGATCCACACGCACGCGTTCGACTACCTGGACGC
GGCGGATCTCGTCGCGACGTCGCTCGTCTCGCGCGACCTTCACCCGGCGA
TGCATCTCCTCTTCGAGCGCGAGACTGCCGCGCTAGCCCGCCGCTTCGGC
TCCGGCGTCGGCGCCGTCGACTTCAGCGCTTCTTTCGGGCACGGCAACGG
TCACGGTACCAACGGCCACGGCAGTGGTTTCAGCGGCGCTGGCAAGAGGC
CCGGTCCGGCGGCGACACCGGCTGCGGCGGCGGCGGCGGCGGCGGCAAAA
GTGGCGTCGGCGGCCGGGCCCCTGCAGCAGCCGGAGCTGCTGCACCTGCG
CACGCGGACGCGCAAGCTGTCGCTGTTTTGGGGGACGCCGGAGCGCGCTG
TCGAGGCGTCGCTCCACGCGTCGGCGCTACGCGTTCACGGGTCGACGTCG
TACGTGAGTTCCTTTTCTTTTTTCGTCTTTCATGTTTCTCTTCGATGGCT
GCGTCTGCTCCGAGAAGACGATATGCCGTTTTCGGGACGAAAGGCATTAG
CCGGTTGATGGCCAAGAGGTGCTTCAGCAGATTCCTGGGCAAGCTTCTCC
TTTTCTCGAGTGATCCTACTGAATGGTGCGTTTTCAACTTCTCCGGTTAG
CTCCTTCTGTTCAGCTTTCTCGCTCGCTTAGCCGTCCCTGCCGTTTTTTC
CAACCCTTTGTGCCTGTCAACATGCGCATCAAACCTTCTGGAAAAACTTT
TGCCGTTGACACTGCAGGTCTACGCGTGCTGCGCCCGCCTGAGTCTGCGC
GACAATCTCGTGGCGGACCTCACGCCACTCTGCGAGCCCTGGCGGGTCGA
TATCAGCCACGAGCTGGCCTCCCTGGCGCCGCCGGCTGGCAACGCTGGCA
GCGGCGGCGGTGGCGGCGGTGGGGGGGAAGACGGCTCCTCCTTCTGCCGC
TTCTTCTCGCTCCCGCCCGCCGCGGCGCCCCTGCTGGCGGCGCGCCTGAA
GCGGGCGGCGGCGGCGGACGATGACGCTGCTGTGCCGCGGCTGCGCATGG
CCGTTGCGCTGCTGAACTGCGCGGCGGAGCGCGGCGACCACGTCTTCGTC
ATGCAGAGCTCCGCCTGAACCGCTGCCGACGGCGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11648:8..1946-

>mRNA_P-wetherbeei_contig11648.1.1 ID=mRNA_P-wetherbeei_contig11648.1.1|Name=mRNA_P-wetherbeei_contig11648.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1440bp|location=Sequence derived from alignment at P-wetherbeei_contig11648:8..1946- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACTACCACCGCGAGAGTAGAGAGCCCAGCACGAGATATGAGGAAGC
GGTTCTAGGAACGCTTTTGCTTCAGAGGCCAGAGAAGCAGGGGGAGGAGA
CAAGAGAAAGAGTTGCAAAGATATCTGAAGCGACGAGGGGAATAGGAGAC
ACCATGCCTTCGTCAACTTCGTCAACGCACCAGTCGCTATCCCAGCACCA
CGCGAACGGCTTGTCGTGGGCGAGCCAGGTACACATAGTGAGAACGAGCC
CGAGAGCGTCTGAGCGTCTGCGACGTTCCGCCAGGAAGCTGCAGAGCGCC
GAGAGCCTCGCGGATGTTTTTTTCCCGGCGGCCCTGCTGTCGGCCAGCGA
CTATGCAGACCCGGCGGCTCCGGAGGAGGAAGCCTTTGCGCAGAAGAAGC
AAGACCGTGAAGATGCTGTCGATGCGAGCAACACGGGCAACGCGCTGGCC
CCGCTTGTACCCACCGACGCGGAGATCGACAGGTGGACCGTCTGCAAGGG
CCGCGGCGCGGACGGCGAGCGCCAGGCGCTCGTCCTGCGCGGCGCGCCTG
GCACGTGGAAGCATCACAATGCGGCGAGCTACGCCTTCCTGCTCATGGGG
CAGTGCCCGTGGCGGGACATCATCCTCGGCGCGTTCCCCGTCGCCGACGC
GCCGATCCACACGCACGCGTTCGACTACCTGGACGCGGCGGATCTCGTCG
CGACGTCGCTCGTCTCGCGCGACCTTCACCCGGCGATGCATCTCCTCTTC
GAGCGCGAGACTGCCGCGCTAGCCCGCCGCTTCGGCTCCGGCGTCGGCGC
CGTCGACTTCAGCGCTTCTTTCGGGCACGGCAACGGTCACGGTACCAACG
GCCACGGCAGTGGTTTCAGCGGCGCTGGCAAGAGGCCCGGTCCGGCGGCG
ACACCGGCTGCGGCGGCGGCGGCGGCGGCGGCAAAAGTGGCGTCGGCGGC
CGGGCCCCTGCAGCAGCCGGAGCTGCTGCACCTGCGCACGCGGACGCGCA
AGCTGTCGCTGTTTTGGGGGACGCCGGAGCGCGCTGTCGAGGCGTCGCTC
CACGCGTCGGCGCTACGCGTTCACGGGTCGACGTCGTACGTCTACGCGTG
CTGCGCCCGCCTGAGTCTGCGCGACAATCTCGTGGCGGACCTCACGCCAC
TCTGCGAGCCCTGGCGGGTCGATATCAGCCACGAGCTGGCCTCCCTGGCG
CCGCCGGCTGGCAACGCTGGCAGCGGCGGCGGTGGCGGCGGTGGGGGGGA
AGACGGCTCCTCCTTCTGCCGCTTCTTCTCGCTCCCGCCCGCCGCGGCGC
CCCTGCTGGCGGCGCGCCTGAAGCGGGCGGCGGCGGCGGACGATGACGCT
GCTGTGCCGCGGCTGCGCATGGCCGTTGCGCTGCTGAACTGCGCGGCGGA
GCGCGGCGACCACGTCTTCGTCATGCAGAGCTCCGCCTGA
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