mRNA_P-wetherbeei_contig11647.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11647.1.1
Unique NamemRNA_P-wetherbeei_contig11647.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11647.1.1 vs. uniprot
Match: A0A7C4TNE3_9HYPH (50S ribosomal protein L25 n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TNE3_9HYPH)

HSP 1 Score: 219 bits (558), Expect = 1.660e-69
Identity = 105/155 (67.74%), Postives = 128/155 (82.58%), Query Frame = 1
Query:    1 MADVVQIKASARPRSGKGAARAARREGKVPGVIYGGKSDPVGIVVDFNEFWKTVQRGRFLATIFEIDVDGKKSRVIPRDLQLDPVKDIPVHVDFQRVTPESRIRVKVPARFINDQASPGIKRGGVLNVVRREIEVFCPPDAIPLAFDFDLTGLEI 465
            MAD V+IKA+ARP +G GAAR+ RR GKVPGVIYG  S+P  I VD NE  K + RGRF++TIF++ VDGKKSRV+PRD+QLDPVKD+P+H+DFQRV+P SR+RV VP RF+N+  SPG+KRGGVLN+VRREIEV CP +AIP  F+F L GLEI
Sbjct:    1 MADTVEIKATARPATGTGAARSVRRAGKVPGVIYGDGSEPQTIAVDHNELLKLMNRGRFMSTIFDLSVDGKKSRVLPRDIQLDPVKDLPIHIDFQRVSPTSRVRVNVPVRFVNEALSPGLKRGGVLNIVRREIEVTCPANAIPEVFEFSLEGLEI 155          
BLAST of mRNA_P-wetherbeei_contig11647.1.1 vs. uniprot
Match: A0A2W4TLL2_9PROT (50S ribosomal protein L25 n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4TLL2_9PROT)

HSP 1 Score: 214 bits (546), Expect = 1.970e-68
Identity = 102/155 (65.81%), Postives = 126/155 (81.29%), Query Frame = 1
Query:    1 MADVVQIKASARPRSGKGAARAARREGKVPGVIYGGKSDPVGIVVDFNEFWKTVQRGRFLATIFEIDVDGKKSRVIPRDLQLDPVKDIPVHVDFQRVTPESRIRVKVPARFINDQASPGIKRGGVLNVVRREIEVFCPPDAIPLAFDFDLTGLEI 465
            MA+VV+I+A+ARPR+G G ARA RR+GK+P VIYG K +P  I +D NE WK VQ+GRFL+T+ ++++DG+K RV+PR++QLDPVKD+P+HVDFQRV     IRV VP RFIN+ ASPG+KRGGVLNVVR EIEV CPPD IP A   DLTGLEI
Sbjct:    1 MAEVVEIQATARPRAGTGGARAVRRQGKIPAVIYGEKKEPETIALDANELWKVVQKGRFLSTVLDVNIDGRKERVLPREVQLDPVKDLPIHVDFQRVGASDFIRVVVPVRFINEAASPGLKRGGVLNVVRHEIEVMCPPDRIPEAITVDLTGLEI 155          
BLAST of mRNA_P-wetherbeei_contig11647.1.1 vs. uniprot
Match: A0A6I0EDP3_HYPSQ (50S ribosomal protein L25 n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EDP3_HYPSQ)

HSP 1 Score: 215 bits (547), Expect = 5.500e-68
Identity = 103/151 (68.21%), Postives = 123/151 (81.46%), Query Frame = 1
Query:   13 VQIKASARPRSGKGAARAARREGKVPGVIYGGKSDPVGIVVDFNEFWKTVQRGRFLATIFEIDVDGKKSRVIPRDLQLDPVKDIPVHVDFQRVTPESRIRVKVPARFINDQASPGIKRGGVLNVVRREIEVFCPPDAIPLAFDFDLTGLEI 465
            +++KA+ARPR+GKGAAR ARREGKVP VIYG    P  I +D+NE WK V +G F +T+FE+DV+GKKSRVIPRDLQ+DPVKD PVHVDF R+  + RIRV+VP RFINDQ SPG+KRGGVLN+VR +IEV CP D IP  F+ DLTGLEI
Sbjct:    6 IELKATARPRAGKGAARQARREGKVPAVIYGDGQSPETIALDYNELWKQVLKGHFTSTVFELDVEGKKSRVIPRDLQVDPVKDQPVHVDFMRIGKDGRIRVEVPVRFINDQLSPGLKRGGVLNIVRHDIEVICPYDHIPAFFEIDLTGLEI 156          
BLAST of mRNA_P-wetherbeei_contig11647.1.1 vs. uniprot
Match: UPI0009313820 (50S ribosomal protein L25/general stress protein Ctc n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI0009313820)

HSP 1 Score: 213 bits (543), Expect = 1.960e-67
Identity = 99/151 (65.56%), Postives = 124/151 (82.12%), Query Frame = 1
Query:   13 VQIKASARPRSGKGAARAARREGKVPGVIYGGKSDPVGIVVDFNEFWKTVQRGRFLATIFEIDVDGKKSRVIPRDLQLDPVKDIPVHVDFQRVTPESRIRVKVPARFINDQASPGIKRGGVLNVVRREIEVFCPPDAIPLAFDFDLTGLEI 465
            +++KA+ARPR+GKGAAR ARREGKVP VIYG    PV I +D+N+ W+ V +G F +T+ +IDV+G KSRVIPRDLQ+DPVKD+PVHVDF R+  + RIRV+VP RF+NDQASPG+KRGGVLN+VR ++EV CP D IP  F+ DLTGLEI
Sbjct:    6 IELKATARPRAGKGAARQARREGKVPAVIYGNGETPVAIALDYNDLWRQVLKGHFTSTVLDIDVEGTKSRVIPRDLQVDPVKDLPVHVDFMRIASDGRIRVEVPVRFVNDQASPGLKRGGVLNIVRHDVEVICPWDHIPPYFEIDLTGLEI 156          
BLAST of mRNA_P-wetherbeei_contig11647.1.1 vs. uniprot
Match: A0A6I3KSG0_9HYPH (50S ribosomal protein L25 n=1 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KSG0_9HYPH)

HSP 1 Score: 213 bits (541), Expect = 5.070e-67
Identity = 100/151 (66.23%), Postives = 124/151 (82.12%), Query Frame = 1
Query:   13 VQIKASARPRSGKGAARAARREGKVPGVIYGGKSDPVGIVVDFNEFWKTVQRGRFLATIFEIDVDGKKSRVIPRDLQLDPVKDIPVHVDFQRVTPESRIRVKVPARFINDQASPGIKRGGVLNVVRREIEVFCPPDAIPLAFDFDLTGLEI 465
            +++KA+ARPR+GKGAAR ARREGKVP VIYG    P+ IV+D+N+ WK V +G F +T+ ++DVDG K+RVIPRDLQ+DPVKD P+HVDF R+  + RIRV+VP RFINDQ SPG+KRGGVLN+VR +IEV CP D IPL F+ DLTGLEI
Sbjct:    6 IELKATARPRAGKGAARQARREGKVPAVIYGNGETPLTIVLDYNDLWKQVIKGHFTSTVLDVDVDGTKNRVIPRDLQVDPVKDQPIHVDFMRIGKDGRIRVEVPVRFINDQLSPGLKRGGVLNIVRHDIEVICPYDHIPLYFEIDLTGLEI 156          
BLAST of mRNA_P-wetherbeei_contig11647.1.1 vs. uniprot
Match: A0A2W4N313_9PROT (50S ribosomal protein L25 n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4N313_9PROT)

HSP 1 Score: 211 bits (536), Expect = 6.980e-67
Identity = 102/155 (65.81%), Postives = 124/155 (80.00%), Query Frame = 1
Query:    1 MADVVQIKASARPRSGKGAARAARREGKVPGVIYGGKSDPVGIVVDFNEFWKTVQRGRFLATIFEIDVDGKKSRVIPRDLQLDPVKDIPVHVDFQRVTPESRIRVKVPARFINDQASPGIKRGGVLNVVRREIEVFCPPDAIPLAFDFDLTGLEI 465
            M +VV+I A+ARPR+GKGAARA RR+GKVP VIYG K +P  I +D +E    +QRGRFL+T+F+I++DG+K RV+PRD+Q DPVKDIP+HVDFQRV     +RV VP RFIN+ ASPG+KRGGVLN+VR EIEV CPPD IP  F  DLTGLEI
Sbjct:    1 MVEVVEIAATARPRAGKGAARAVRRQGKVPAVIYGEKQEPETIAIDTSELISVLQRGRFLSTVFDINIDGQKRRVLPRDVQFDPVKDIPIHVDFQRVGASEHVRVVVPVRFINEGASPGLKRGGVLNIVRHEIEVICPPDRIPEYFTVDLTGLEI 155          
BLAST of mRNA_P-wetherbeei_contig11647.1.1 vs. uniprot
Match: UPI0019A1EB46 (50S ribosomal protein L25/general stress protein Ctc n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=UPI0019A1EB46)

HSP 1 Score: 207 bits (526), Expect = 1.080e-64
Identity = 95/152 (62.50%), Postives = 123/152 (80.92%), Query Frame = 1
Query:   10 VVQIKASARPRSGKGAARAARREGKVPGVIYGGKSDPVGIVVDFNEFWKTVQRGRFLATIFEIDVDGKKSRVIPRDLQLDPVKDIPVHVDFQRVTPESRIRVKVPARFINDQASPGIKRGGVLNVVRREIEVFCPPDAIPLAFDFDLTGLEI 465
            ++++KA+ARPR+GKGAAR ARREGKVPGVIYG    P  + ++F + WK V +G F +T+FE++V+G KSRVIPRDLQLDP+KD+P+HVDF R+  + RIRV+VP RFIN+  SPG+KRGGVLN+VR ++EV CP D IP  F+ DLTGLEI
Sbjct:    5 LIELKATARPRAGKGAARQARREGKVPGVIYGDGQPPQTVALEFTDLWKQVTKGHFTSTVFEVNVEGSKSRVIPRDLQLDPIKDLPIHVDFMRIGKDGRIRVEVPVRFINETLSPGLKRGGVLNIVRHDVEVICPYDHIPPYFEVDLTGLEI 156          
BLAST of mRNA_P-wetherbeei_contig11647.1.1 vs. uniprot
Match: A0A833FZJ5_9HYPH (50S ribosomal protein L25 n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A833FZJ5_9HYPH)

HSP 1 Score: 204 bits (520), Expect = 8.000e-64
Identity = 97/155 (62.58%), Postives = 122/155 (78.71%), Query Frame = 1
Query:    1 MADVVQIKASARPRSGKGAARAARREGKVPGVIYGGKSDPVGIVVDFNEFWKTVQRGRFLATIFEIDVDGKKSRVIPRDLQLDPVKDIPVHVDFQRVTPESRIRVKVPARFINDQASPGIKRGGVLNVVRREIEVFCPPDAIPLAFDFDLTGLEI 465
            MA   +IKASARPR+G G ARAARREG+VP V+YG   +P  + VD+ E  K V RG+FL+T+F ++VDGK +RVIPR++Q+DPVKD+PVHVDFQR+  E RIRV VP +FI++  SPG+KRGGVLN+VR E+EV CP DAIP  F+F L GLEI
Sbjct:    1 MAQASEIKASARPRAGTGGARAARREGRVPAVVYGDAREPENVTVDYAELVKLVARGKFLSTVFNLEVDGKTTRVIPREVQVDPVKDLPVHVDFQRIGAEGRIRVNVPVKFIHENLSPGLKRGGVLNIVRHEVEVICPADAIPAQFEFSLEGLEI 155          
BLAST of mRNA_P-wetherbeei_contig11647.1.1 vs. uniprot
Match: A0A849TKN4_9HYPH (50S ribosomal protein L25 n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A849TKN4_9HYPH)

HSP 1 Score: 203 bits (517), Expect = 1.840e-63
Identity = 98/150 (65.33%), Postives = 119/150 (79.33%), Query Frame = 1
Query:   16 QIKASARPRSGKGAARAARREGKVPGVIYGGKSDPVGIVVDFNEFWKTVQRGRFLATIFEIDVDGKKSRVIPRDLQLDPVKDIPVHVDFQRVTPESRIRVKVPARFINDQASPGIKRGGVLNVVRREIEVFCPPDAIPLAFDFDLTGLEI 465
            +IKA ARPR+GKGAAR  RREG VPGVIYG K   V + +D       + +G+FL+T+F +DVDG K+RVIPRD+QLDPVKD P+HVDFQRVT  SRIRV VP +F+N+ ASPG+KRGGVLN+VR ++EV C PD IP +FDFDLTGLEI
Sbjct:    5 EIKAKARPRAGKGAARQVRREGLVPGVIYGDKEAAVTVALDSRALSLIISKGKFLSTLFMLDVDGAKTRVIPRDVQLDPVKDFPLHVDFQRVTSTSRIRVSVPCKFVNEAASPGLKRGGVLNIVRHDVEVMCAPDHIPASFDFDLTGLEI 154          
BLAST of mRNA_P-wetherbeei_contig11647.1.1 vs. uniprot
Match: A0A109B8K9_HYPSL (50S ribosomal protein L25 n=1 Tax=Hyphomicrobium sulfonivorans TaxID=121290 RepID=A0A109B8K9_HYPSL)

HSP 1 Score: 196 bits (499), Expect = 3.870e-61
Identity = 95/152 (62.50%), Postives = 117/152 (76.97%), Query Frame = 1
Query:   10 VVQIKASARPRSGKGAARAARREGKVPGVIYGGKSDPVGIVVDFNEFWKTVQRGRFLATIFEIDVDGKKSRVIPRDLQLDPVKDIPVHVDFQRVTPESRIRVKVPARFINDQASPGIKRGGVLNVVRREIEVFCPPDAIPLAFDFDLTGLEI 465
            V+++KA+ARPR+GKGAAR ARR+G VP VIYG    P  I +DFN+ WK V +G F +T+ EID +GKKS VIPRDLQLDPVKDIP+HVD  R+  + RIRV VP RFIN+  SPG+KRGGVLN+VR E+EV CP + IP  F+ DL G+EI
Sbjct:    3 VIEMKATARPRAGKGAARQARRDGNVPAVIYGAGEAPETISLDFNDLWKQVLKGHFTSTVLEIDCEGKKSLVIPRDLQLDPVKDIPLHVDLLRIGKDGRIRVAVPVRFINEALSPGLKRGGVLNIVRHEVEVICPYNHIPSVFEIDLEGVEI 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11647.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4TNE3_9HYPH1.660e-6967.7450S ribosomal protein L25 n=1 Tax=Hyphomicrobiales... [more]
A0A2W4TLL2_9PROT1.970e-6865.8150S ribosomal protein L25 n=1 Tax=Proteobacteria b... [more]
A0A6I0EDP3_HYPSQ5.500e-6868.2150S ribosomal protein L25 n=1 Tax=Hyphomicrobium s... [more]
UPI00093138201.960e-6765.5650S ribosomal protein L25/general stress protein C... [more]
A0A6I3KSG0_9HYPH5.070e-6766.2350S ribosomal protein L25 n=1 Tax=Hyphomicrobium a... [more]
A0A2W4N313_9PROT6.980e-6765.8150S ribosomal protein L25 n=1 Tax=Proteobacteria b... [more]
UPI0019A1EB461.080e-6462.5050S ribosomal protein L25/general stress protein C... [more]
A0A833FZJ5_9HYPH8.000e-6462.5850S ribosomal protein L25 n=1 Tax=Hyphomicrobiacea... [more]
A0A849TKN4_9HYPH1.840e-6365.3350S ribosomal protein L25 n=1 Tax=Hyphomicrobiacea... [more]
A0A109B8K9_HYPSL3.870e-6162.5050S ribosomal protein L25 n=1 Tax=Hyphomicrobium s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11647contigP-wetherbeei_contig11647:1..465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1211115.ALIQ01000018_gene2110
Preferred namectc
PFAMsRibosomal_L25p,Ribosomal_TL5_C
Model size465
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02897
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
Evalue4.51e-58
EggNOG OGsCOG1825@1|root,COG1825@2|Bacteria,1RDH0@1224|Proteobacteria,2U5P0@28211|Alphaproteobacteria,3N9XV@45404|Beijerinckiaceae
DescriptionThis is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
Cds size465
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185920.2832274-CDS-P-wetherbeei_contig11647:0..4651683185920.2832274-CDS-P-wetherbeei_contig11647:0..465Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11647 1..465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11647.1.1prot_P-wetherbeei_contig11647.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11647 1..465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11647.1.1

>prot_P-wetherbeei_contig11647.1.1 ID=prot_P-wetherbeei_contig11647.1.1|Name=mRNA_P-wetherbeei_contig11647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
MADVVQIKASARPRSGKGAARAARREGKVPGVIYGGKSDPVGIVVDFNEF
WKTVQRGRFLATIFEIDVDGKKSRVIPRDLQLDPVKDIPVHVDFQRVTPE
SRIRVKVPARFINDQASPGIKRGGVLNVVRREIEVFCPPDAIPLAFDFDL
TGLEI
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mRNA from alignment at P-wetherbeei_contig11647:1..465-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11647.1.1 ID=mRNA_P-wetherbeei_contig11647.1.1|Name=mRNA_P-wetherbeei_contig11647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig11647:1..465- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGATGTTGTACAAATCAAGGCCTCGGCGCGCCCACGGAGCGGTAA GGGGGCCGCACGTGCAGCGCGACGCGAGGGTAAGGTGCCGGGAGTAATCT ACGGCGGCAAGTCGGATCCGGTCGGTATCGTCGTCGATTTCAACGAATTC TGGAAAACCGTCCAGCGCGGCCGCTTCCTCGCGACGATTTTCGAAATCGA TGTCGATGGCAAGAAGTCCCGCGTCATCCCGCGCGACCTTCAGCTCGATC CCGTCAAGGACATCCCGGTCCACGTCGATTTCCAGCGCGTGACGCCTGAA AGCCGCATCCGCGTCAAGGTGCCGGCTCGCTTCATCAACGATCAGGCTTC CCCGGGCATCAAGCGCGGTGGCGTACTCAACGTGGTGCGCCGCGAGATCG AGGTATTCTGCCCACCCGATGCCATCCCGTTGGCGTTCGACTTCGACCTT ACCGGTCTCGAGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11647:1..465-

>mRNA_P-wetherbeei_contig11647.1.1 ID=mRNA_P-wetherbeei_contig11647.1.1|Name=mRNA_P-wetherbeei_contig11647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig11647:1..465- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGATGTTGTACAAATCAAGGCCTCGGCGCGCCCACGGAGCGGTAA
GGGGGCCGCACGTGCAGCGCGACGCGAGGGTAAGGTGCCGGGAGTAATCT
ACGGCGGCAAGTCGGATCCGGTCGGTATCGTCGTCGATTTCAACGAATTC
TGGAAAACCGTCCAGCGCGGCCGCTTCCTCGCGACGATTTTCGAAATCGA
TGTCGATGGCAAGAAGTCCCGCGTCATCCCGCGCGACCTTCAGCTCGATC
CCGTCAAGGACATCCCGGTCCACGTCGATTTCCAGCGCGTGACGCCTGAA
AGCCGCATCCGCGTCAAGGTGCCGGCTCGCTTCATCAACGATCAGGCTTC
CCCGGGCATCAAGCGCGGTGGCGTACTCAACGTGGTGCGCCGCGAGATCG
AGGTATTCTGCCCACCCGATGCCATCCCGTTGGCGTTCGACTTCGACCTT
ACCGGTCTCGAGATC
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