mRNA_P-wetherbeei_contig11640.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11640.1.1
Unique NamemRNA_P-wetherbeei_contig11640.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig11640.1.1 vs. uniprot
Match: D8LLH5_ECTSI (Ornithine transcarbamoylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH5_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 4.540e-106
Identity = 158/210 (75.24%), Postives = 181/210 (86.19%), Query Frame = 1 
Query:    1 VGDSVAMIFQKRSTRTRVSTETGMGLLGGRALFLGPSDVQLGVNESMRDTARVLSGFNSLILARVFGHADVMQLAAEASVPVINALSDLHHPLQTLADLMTLHEHFGGLDGLTFSWVGDGNNVLHDLMLGAAKLGMGAHVATPTGYEPDAGVVALTRSLAQENGSKLLMTTDPQEAVAGADVVVTDTWVSMGQEDEYQKRDRDFAGYQVS 630
            +G SVAMIFQKRSTRTRVSTETGMGLLGGRALFLGP+D+QLGVNESM+DTA+VLSGFNSL+LARV  HADV +L AEA VPVINALSDLHHPLQTLADLMT+ E FG L+GLTF+WVGDGNNVLHDLMLGAAKL +   +ATP GY PD  V A+T +LA+E+GS +L+T DP+EAV G  VV TDTWVSMGQE+E  KR +D+ GYQV+
Sbjct:   54 IGKSVAMIFQKRSTRTRVSTETGMGLLGGRALFLGPTDIQLGVNESMKDTAKVLSGFNSLLLARVNDHADVEELKAEARVPVINALSDLHHPLQTLADLMTIQERFGKLEGLTFTWVGDGNNVLHDLMLGAAKLAINLRIATPEGYRPDPAVTAMTEALAKESGSSVLITADPKEAVTGTHVVATDTWVSMGQEEEAAKRIKDYEGYQVT 263
[Close]
BLAST of mRNA_P-wetherbeei_contig11640.1.1 vs. uniprot
Match: A0A6S8XZ83_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8XZ83_9STRA)

HSP 1 Score: 307 bits (786), Expect = 7.560e-102
Identity = 151/209 (72.25%), Postives = 177/209 (84.69%), Query Frame = 1 
Query:    4 GDSVAMIFQKRSTRTRVSTETGMGLLGGRALFLGPSDVQLGVNESMRDTARVLSGFNSLILARVFGHADVMQLAAEASVPVINALSDLHHPLQTLADLMTLHEHFGGLDGLTFSWVGDGNNVLHDLMLGAAKLGMGAHVATPTGYEPDAGVVALTRSLAQENGSKLLMTTDPQEAVAGADVVVTDTWVSMGQEDEYQKRDRDFAGYQVS 630
            G SV+MIFQKRSTRTRVSTETGM LLGG ALFLGPSD+QLGVNESMRDTA VLS FNS+ILARV+GH D+++L+  A+VP+INALSDLHHPLQTLADLM L +HFG L G T +WVGDGNNVLHDLM+GAAKLGM  +VATP GYE ++ +V +T+ LA ENG K+ +T    EAV G+DVVVTDTWVSMGQE+EY KR  +FAGY+V+
Sbjct:   84 GKSVSMIFQKRSTRTRVSTETGMNLLGGHALFLGPSDIQLGVNESMRDTANVLSRFNSIILARVYGHDDIVELSKHATVPIINALSDLHHPLQTLADLMALEDHFGDLKGKTLAWVGDGNNVLHDLMIGAAKLGMNVNVATPAGYEANSRIVDITKKLADENGGKVFLTAVADEAVTGSDVVVTDTWVSMGQEEEYAKRIEEFAGYEVN 292
[Close]
BLAST of mRNA_P-wetherbeei_contig11640.1.1 vs. uniprot
Match: A0A7S2MG95_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MG95_9STRA)

HSP 1 Score: 304 bits (779), Expect = 1.090e-100
Identity = 153/210 (72.86%), Postives = 177/210 (84.29%), Query Frame = 1 
Query:    4 GDSVAMIFQKRSTRTRVSTETGMGLLGGRALFLGPSDVQLGVNESMRDTARVLSGFNSLILARVFGHADVMQLAAEASVPVINALSDLHHPLQTLADLMTLHEHFGG-LDGLTFSWVGDGNNVLHDLMLGAAKLGMGAHVATPTGYEPDAGVVALTRSLAQENGSKLLMTTDPQEAVAGADVVVTDTWVSMGQEDEYQKRDRDFAGYQVS 630
            G SV+MIFQKRSTRTRVSTETGM LLGG ALFLGPSD+QLGVNESMRDTA VLS FNS+ILARV+GH D+++L   A+VPVINALSDLHHPLQTLADLM L +HFGG L G T +WVGDGNNVLHDLM+GAAKLGM  +VATP GYE +  +V +T+ LA ENG K+ +T   +EAV G+DV+VTDTWVSMGQEDEY KR  +FAGY+V+
Sbjct:   90 GKSVSMIFQKRSTRTRVSTETGMSLLGGHALFLGPSDIQLGVNESMRDTANVLSRFNSIILARVYGHDDIVELGKHATVPVINALSDLHHPLQTLADLMALEDHFGGDLRGKTLAWVGDGNNVLHDLMMGAAKLGMNVNVATPAGYEANERIVNITKQLAGENGGKVFLTAVAEEAVKGSDVIVTDTWVSMGQEDEYAKRIAEFAGYEVN 299
[Close]
BLAST of mRNA_P-wetherbeei_contig11640.1.1 vs. uniprot
Match: A0A7S2V0S5_9STRA (Ornithine carbamoyltransferase n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0S5_9STRA)

HSP 1 Score: 304 bits (779), Expect = 1.500e-100
Identity = 155/210 (73.81%), Postives = 176/210 (83.81%), Query Frame = 1 
Query:    4 GDSVAMIFQKRSTRTRVSTETGMGLLGGRALFLGPSDVQLGVNESMRDTARVLSGFNSLILARVFGHADVMQLAAEASVPVINALSDLHHPLQTLADLMTLHEHFG-GLDGLTFSWVGDGNNVLHDLMLGAAKLGMGAHVATPTGYEPDAGVVALTRSLAQENGSKLLMTTDPQEAVAGADVVVTDTWVSMGQEDEYQKRDRDFAGYQVS 630
            G SVAMIFQKRSTRTRVSTETGM LLGG ALFLGPSD+QLGVNE M+DTA VLS FNSL+LARVF HADV +LA  A+VPVINALSDLHHPLQ LADL+TL EHFG  L G T +WVGDGNNVLHDLMLGAAKLGM  ++A PTGYEPDAGV+  T+ L    G +L+MTTDP  A  GA+VVVTDTW+SMGQE++ +KR +DFAGY+V+
Sbjct:  101 GSSVAMIFQKRSTRTRVSTETGMSLLGGHALFLGPSDIQLGVNECMKDTALVLSRFNSLVLARVFAHADVTELAQHATVPVINALSDLHHPLQALADLLTLQEHFGKDLSGKTVAWVGDGNNVLHDLMLGAAKLGMNVNIACPTGYEPDAGVLEATKELLLAGGGELVMTTDPVVACTGANVVVTDTWISMGQEEDSKKRLKDFAGYEVN 310
[Close]
BLAST of mRNA_P-wetherbeei_contig11640.1.1 vs. uniprot
Match: B8BT16_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BT16_THAPS)

HSP 1 Score: 300 bits (767), Expect = 6.130e-99
Identity = 153/210 (72.86%), Postives = 176/210 (83.81%), Query Frame = 1 
Query:    4 GDSVAMIFQKRSTRTRVSTETGMGLLGGRALFLGPSDVQLGVNESMRDTARVLSGFNSLILARVFGHADVMQLAAEASVPVINALSDLHHPLQTLADLMTLHEHFGGLDGLTFSWVGDGNNVLHDLMLGAAKLGMGAHVATPTGYEPDAGVVALTRSLAQENGSK-LLMTTDPQEAVAGADVVVTDTWVSMGQEDEYQKRDRDFAGYQVS 630
            G SV+MIFQKRSTRTRVSTETGM LLGG++LFLGPSD+QLGVNESMRDTA VLS FNSLILARVF H DV++L+  A+VPVINALSDLHHPLQTLADLM L +HFG L G T +WVGDGNNVLHDL LG AKLGM   +ATP GYE DAGV+  TR LA E+G++ + +T    EAV G+DVVVTDTWVSMGQE+EY+KR ++F GYQV+
Sbjct:   85 GQSVSMIFQKRSTRTRVSTETGMNLLGGQSLFLGPSDIQLGVNESMRDTALVLSRFNSLILARVFSHNDVLELSEHATVPVINALSDLHHPLQTLADLMALEDHFGDLKGKTLAWVGDGNNVLHDLALGGAKLGMNIRIATPVGYEADAGVLDTTRKLAAESGTEDVFLTNVAAEAVKGSDVVVTDTWVSMGQEEEYEKRVKEFDGYQVN 294
[Close]
BLAST of mRNA_P-wetherbeei_contig11640.1.1 vs. uniprot
Match: A0A7S1D911_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D911_CYCTE)

HSP 1 Score: 297 bits (761), Expect = 2.980e-98
Identity = 153/211 (72.51%), Postives = 175/211 (82.94%), Query Frame = 1 
Query:    4 GDSVAMIFQKRSTRTRVSTETGMGLLGGRALFLGPSDVQLGVNESMRDTARVLSGFNSLILARVFGHADVMQLAAEASVPVINALSDLHHPLQTLADLMTLHEHFGG-LDGLTFSWVGDGNNVLHDLMLGAAKLGMGAHVATPTGYEPDAGVVALTRSLAQENGSKLLMTT-DPQEAVAGADVVVTDTWVSMGQEDEYQKRDRDFAGYQVS 630
            G S++MIFQKRSTRTRVSTETGM LLGG ALFLGPSD+QLGVNESM+DTA VLS FNSLILARVF H D+++LA  A VPVINALSDLHHPLQTLADLM L +HFG  L G T +WVGDGNNVLHDLMLGAAK+GM   VATPTGYEP+  ++A TR LA +N ++ + TT D   AV GADV+VTDTWVSMGQE+EY KR ++F GYQV+
Sbjct:   67 GQSLSMIFQKRSTRTRVSTETGMFLLGGHALFLGPSDIQLGVNESMKDTALVLSRFNSLILARVFSHNDILELAEHAQVPVINALSDLHHPLQTLADLMALQDHFGNNLQGKTLAWVGDGNNVLHDLMLGAAKMGMNVRVATPTGYEPNETILAKTRQLATDNNTEAVFTTTDASAAVDGADVIVTDTWVSMGQEEEYAKRVKEFEGYQVN 277
[Close]
BLAST of mRNA_P-wetherbeei_contig11640.1.1 vs. uniprot
Match: K0TH75_THAOC (Uncharacterized protein n=3 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TH75_THAOC)

HSP 1 Score: 298 bits (762), Expect = 3.300e-98
Identity = 150/210 (71.43%), Postives = 176/210 (83.81%), Query Frame = 1 
Query:    4 GDSVAMIFQKRSTRTRVSTETGMGLLGGRALFLGPSDVQLGVNESMRDTARVLSGFNSLILARVFGHADVMQLAAEASVPVINALSDLHHPLQTLADLMTLHEHFGGLDGLTFSWVGDGNNVLHDLMLGAAKLGMGAHVATPTGYEPDAGVVALTRSLAQENGSK-LLMTTDPQEAVAGADVVVTDTWVSMGQEDEYQKRDRDFAGYQVS 630
            G SV+MIFQKRSTRTRVSTETGM LLGG++LFLGPSD+QLGVNESMRDTA VLS FNSL+LARVF H D+++L+  A+VPVINALSDLHHPLQTLADLM L +HFG L G T +WVGDGNNVLHDLMLG AKLGM   +ATP GY+ ++GV+  T+ LA ENG+  +  TT   EAV G+DVVVTDTWVSMGQEDEY++R ++F GYQV+
Sbjct:   83 GQSVSMIFQKRSTRTRVSTETGMNLLGGQSLFLGPSDIQLGVNESMRDTALVLSRFNSLVLARVFAHDDILELSKYATVPVINALSDLHHPLQTLADLMALEDHFGNLKGKTLAWVGDGNNVLHDLMLGGAKLGMNIRIATPAGYDANSGVLETTKQLAAENGTADVFETTVASEAVKGSDVVVTDTWVSMGQEDEYEQRVKEFDGYQVN 292
[Close]
BLAST of mRNA_P-wetherbeei_contig11640.1.1 vs. uniprot
Match: A0A7S2LE14_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LE14_9STRA)

HSP 1 Score: 297 bits (761), Expect = 4.980e-98
Identity = 150/210 (71.43%), Postives = 177/210 (84.29%), Query Frame = 1 
Query:    4 GDSVAMIFQKRSTRTRVSTETGMGLLGGRALFLGPSDVQLGVNESMRDTARVLSGFNSLILARVFGHADVMQLAAEASVPVINALSDLHHPLQTLADLMTLHEHFGGLDGLTFSWVGDGNNVLHDLMLGAAKLGMGAHVATPTGYEPDAGVVALTRSLAQENGSK-LLMTTDPQEAVAGADVVVTDTWVSMGQEDEYQKRDRDFAGYQVS 630
            G SV+MIFQKRSTRTRVSTETGM LLGG++LFLGPSD+QLGVNESMRDTA VLS FNSL+LARVF H DV++L+  A+VPVINALSDLHHPLQTLADLM L +HFG + G T +WVGDGNNVLHDLMLG AKLGM   VATP GYE + G++  T+ LA ENG++ + +TT   EAV G+DVVVTDTWVSMGQE+EY++R ++F GYQV+
Sbjct:   85 GQSVSMIFQKRSTRTRVSTETGMTLLGGQSLFLGPSDIQLGVNESMRDTALVLSRFNSLVLARVFSHNDVLELSKHATVPVINALSDLHHPLQTLADLMALEDHFGDVKGKTLAWVGDGNNVLHDLMLGGAKLGMNIRVATPEGYEANEGILETTKKLAAENGTEDVFLTTVASEAVKGSDVVVTDTWVSMGQEEEYEQRVKEFDGYQVN 294
[Close]
BLAST of mRNA_P-wetherbeei_contig11640.1.1 vs. uniprot
Match: A0A7S4AXV9_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AXV9_9STRA)

HSP 1 Score: 296 bits (757), Expect = 1.610e-97
Identity = 150/210 (71.43%), Postives = 171/210 (81.43%), Query Frame = 1 
Query:    4 GDSVAMIFQKRSTRTRVSTETGMGLLGGRALFLGPSDVQLGVNESMRDTARVLSGFNSLILARVFGHADVMQLAAEASVPVINALSDLHHPLQTLADLMTLHEHFG-GLDGLTFSWVGDGNNVLHDLMLGAAKLGMGAHVATPTGYEPDAGVVALTRSLAQENGSKLLMTTDPQEAVAGADVVVTDTWVSMGQEDEYQKRDRDFAGYQVS 630
            G S++MIFQKRSTRTRVSTETGM +LGG ALFLGPSD+QLGVNESMRDTA VLS FN LILARV+ H D+  LA  + VP+INALSDLHHPLQTLADLM L +HFG  L G T +WVGDGNNVLHDLMLG+ K+GM   +ATP GYEPDA ++A +  LA+ENG  L  TT   EAV GADVVVTDTWVSMGQEDEY+KR ++F GYQV+
Sbjct:   77 GHSLSMIFQKRSTRTRVSTETGMSMLGGHALFLGPSDIQLGVNESMRDTASVLSRFNDLILARVYAHNDITDLAKYSDVPIINALSDLHHPLQTLADLMALQQHFGKDLSGKTVAWVGDGNNVLHDLMLGSLKMGMNVQIATPAGYEPDADIMAKSEVLAEENGVSLTTTTVADEAVNGADVVVTDTWVSMGQEDEYEKRVKEFDGYQVN 286
[Close]
BLAST of mRNA_P-wetherbeei_contig11640.1.1 vs. uniprot
Match: A0A7S2SEV3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SEV3_9STRA)

HSP 1 Score: 291 bits (745), Expect = 1.200e-95
Identity = 148/212 (69.81%), Postives = 179/212 (84.43%), Query Frame = 1 
Query:    4 GDSVAMIFQKRSTRTRVSTETGMGLLGGRALFLGPSDVQLGVNESMRDTARVLSGFNSLILARVFGHADVMQLAAEASVPVINALSDLHHPLQTLADLMTLHEHFGG--LDGLTFSWVGDGNNVLHDLMLGAAKLGMGAHVATPTGYEPDAGVVALTRSLAQENGSK-LLMTTDPQEAVAGADVVVTDTWVSMGQEDEYQKRDRDFAGYQVS 630
            G SV+MIFQKRSTRTRVSTETGMGLLGG++LFLGPSD+QLGVNESM+DTA VLSGFNSLILARV  H+++ +LA  A+VP+INALSDLHHPLQTLADLM L +HFG   + G T +WVGDGNNVLHDLMLG+AKLGM   +ATP GYE DAG++  TR LA+EN ++ + +TT   EAV  +DV+VTDTWVSMGQE+EY+KR ++F GY+V+
Sbjct:   80 GQSVSMIFQKRSTRTRVSTETGMGLLGGQSLFLGPSDIQLGVNESMKDTALVLSGFNSLILARVNTHSEISELAKHATVPIINALSDLHHPLQTLADLMALEDHFGTDKIRGKTVAWVGDGNNVLHDLMLGSAKLGMNVRIATPKGYECDAGILEKTRQLAKENETEDVFLTTVADEAVKSSDVIVTDTWVSMGQEEEYEKRIKEFDGYEVN 291
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11640.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLH5_ECTSI4.540e-10675.24Ornithine transcarbamoylase n=1 Tax=Ectocarpus sil... [more]
A0A6S8XZ83_9STRA7.560e-10272.25Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2MG95_9STRA1.090e-10072.86Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2V0S5_9STRA1.500e-10073.81Ornithine carbamoyltransferase n=2 Tax=Fibrocapsa ... [more]
B8BT16_THAPS6.130e-9972.86Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1D911_CYCTE2.980e-9872.51Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
K0TH75_THAOC3.300e-9871.43Uncharacterized protein n=3 Tax=Thalassiosira ocea... [more]
A0A7S2LE14_9STRA4.980e-9871.43Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S4AXV9_9STRA1.610e-9771.43Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2SEV3_9STRA1.200e-9569.81Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11640contigP-wetherbeei_contig11640:28..2051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LLH5
Preferred nameOTC
PFAMsOTCace,OTCace_N
Model size630
Max annot lvl2759|Eukaryota
KEGG rclassRC00096
KEGG koko:K00611
KEGG ReactionR01398
KEGG Pathwayko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230
KEGG ModuleM00029,M00844
Hectar predicted targeting categoryother localisation
GOsGO:0000050,GO:0000052,GO:0001101,GO:0001889,GO:0003674,GO:0003824,GO:0004585,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005829,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006593,GO:0006807,GO:0007275,GO:0007494,GO:0007584,GO:0008150,GO:0008152,GO:0008289,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009084,GO:0009605,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010243,GO:0014070,GO:0016020,GO:0016043,GO:0016053,GO:0016054,GO:0016597,GO:0016740,GO:0016741,GO:0016743,GO:0019240,GO:0019627,GO:0019752,GO:0019866,GO:0022607,GO:0031090,GO:0031406,GO:0031667,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032868,GO:0033273,GO:0034641,GO:0035295,GO:0036094,GO:0042221,GO:0042301,GO:0042450,GO:0042493,GO:0042592,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043434,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046395,GO:0048513,GO:0048565,GO:0048731,GO:0048732,GO:0048856,GO:0048878,GO:0050801,GO:0050896,GO:0051259,GO:0051260,GO:0055081,GO:0055123,GO:0061008,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070206,GO:0070207,GO:0070781,GO:0071704,GO:0071840,GO:0071941,GO:0097272,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1901652,GO:1901698,GO:1901700
Exons6
Evalue9.08e-104
EggNOG OGsCOG0448@1|root,KOG1504@2759|Eukaryota
EC2.1.3.3
Descriptionornithine carbamoyltransferase activity
Cds size612
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11640.1.1prot_P-wetherbeei_contig11640.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11640 28..2033 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185920.1521306-CDS-P-wetherbeei_contig11640:27..1531683185920.1521306-CDS-P-wetherbeei_contig11640:27..153Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11640 28..153 -
1683185920.1611714-CDS-P-wetherbeei_contig11640:477..6331683185920.1611714-CDS-P-wetherbeei_contig11640:477..633Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11640 478..633 -
1683185920.1763556-CDS-P-wetherbeei_contig11640:893..9591683185920.1763556-CDS-P-wetherbeei_contig11640:893..959Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11640 894..959 -
1683185920.1873271-CDS-P-wetherbeei_contig11640:1202..13081683185920.1873271-CDS-P-wetherbeei_contig11640:1202..1308Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11640 1203..1308 -
1683185920.194798-CDS-P-wetherbeei_contig11640:1556..16651683185920.194798-CDS-P-wetherbeei_contig11640:1556..1665Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11640 1557..1665 -
1683185920.2028692-CDS-P-wetherbeei_contig11640:1984..20331683185920.2028692-CDS-P-wetherbeei_contig11640:1984..2033Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11640 1985..2033 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185920.2114298-UTR-P-wetherbeei_contig11640:2033..20511683185920.2114298-UTR-P-wetherbeei_contig11640:2033..2051Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11640 2034..2051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11640.1.1

>prot_P-wetherbeei_contig11640.1.1 ID=prot_P-wetherbeei_contig11640.1.1|Name=mRNA_P-wetherbeei_contig11640.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=204bp
MIFQKRSTRTRVSTETGMGLLGGRALFLGPSDVQLGVNESMRDTARVLSG
FNSLILARVFGHADVMQLAAEASVPVINALSDLHHPLQTLADLMTLHEHF
GGLDGLTFSWVGDGNNVLHDLMLGAAKLGMGAHVATPTGYEPDAGVVALT
RSLAQENGSKLLMTTDPQEAVAGADVVVTDTWVSMGQEDEYQKRDRDFAG
YQVS
back to top

mRNA from alignment at P-wetherbeei_contig11640:28..2051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11640.1.1 ID=mRNA_P-wetherbeei_contig11640.1.1|Name=mRNA_P-wetherbeei_contig11640.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2024bp|location=Sequence derived from alignment at P-wetherbeei_contig11640:28..2051- (Phaeothamnion wetherbeei SAG_119_79)
GTAGGGGATAGCGTGGCGATGATCTTCCAGAAAAGAAGTACGCGGACCCG
CGTCTCGACAGAAACAGGTGAAGCATCACATTTTGCTGCCGCACTGCTGC
CGTCGCTGCAAGCGCCTCCCTCTGCTGCCACAATTAGTTTTAAAGACCTT
TCGTAAAGGATGAGCAGCTCTTATTCCTTATCACTACCTTTGCACTTATC
ATCGCTGCCTCCGCCCATGCCGTCGGCTGTTATCGATTTTTGGCTCGGCT
TTAATCGGTCACAGTTCTCCGACATTATAGCCCTTTCGCTCCAGAAATGC
CAAGGAAAAGGGCGTGGCGAACGCTGCCTTAGACCGTCTTCGAGATATAA
AAAACATCTTCGCCTGTTCACCCTACCCGAACACAGGTATGGGATTGCTC
GGCGGACGTGCTTTGTTCCTCGGTCCTTCGGACGTCCAACTTGGAGTAAA
CGAGAGTATGCGGGACACGGCGCGGGTCCTGTCGGGCTTCAATAGGTCAG
CCAGCTGTGCCGTGTTCGATGTTGTCTGCTGCATCTCTGCGTTGAAAGCA
ACGAATGCGGATAGCATGCTCACACTGGAACGGGCACCTACGATGGCTAT
TGATGAGGATTTCATGCCCGCCCGTCAACGAATCCAGCTCTGCAGCTTCT
TATAATCTACCGATGCGCTGCTTGGAATCGTTGCTGTGTGTTTCTACCAC
CTGCCCGTTCATCCGTTTCGCCTCGACACTGCCACGCATGCAGCCTGATT
CTGGCGCGCGTGTTCGGGCATGCGGACGTGATGCAGCTGGCAGCGGAGGC
CTCGGTGCCCGTCATCAATGCCCTCAGCGATTTGCACCACCCGCTGCAGG
TGCGTGTGGGCACTCAACCTGCCGGCAACGGGGGCATTTTATAATAGCGT
GGCCGTCGCGAAAGGTTCATTGTCTGAGGCCATCGTTCTTTAGAAAAGTT
GCGCGTTCTGGTAGCTATTGTCCTTCTCCATGTACTCTTTTTCCCATCTC
CTCTCCTTTCTTTTCTTTCGCGCTGTCTCTATGGTGAAGCATTACCTCCC
TGTCTCTTTTTCTGAACCGTGAACGGCTGTGGCCGTGCGCAGACGCTGGC
CGATCTGATGACGCTGCACGAACACTTTGGTGGCCTCGATGGACTCACAT
TCTCCTGGGTGAGAGAAGGCAGCAGGCATGCCAGCTTTAGGCCCATTTTT
TCCGCTCCATTATTCCTTTCCAACAAAGAAAACAAGCTGCCCCAAATTTG
ACTTTGCTGTTTTCGATTCTTGATACGATTTGCCGCCACTTCAAACCTCG
CTGTTCCGGCCCTTTCGTTTTGCACCGCCGCCGCCGCCATCGCACCGCCG
TTGCACCGCCGTTTCGCCACCGCTGCTGCCCCCATGTTGAATTTCCTTCC
ACGGAAATTAATCACCAGGTGGGAGACGGCAACAACGTGCTTCATGACCT
GATGCTGGGGGCGGCGAAGCTCGGCATGGGGGCCCACGTGGCAACGCCGA
CCGGGTACGAGCCGGATGCCGGCGTCGTTGCCCTCACGAGAAGCCTCGCG
CAGGAAAACGGGAGCAAGCTTCTGGTGCGTTTTTATGAGATGGTTGTGTT
CTTTTCTTTCGGCAAGGGGTGATAGGCAGGGTTGGAGGCGGAGGTGCAAA
CACGTTTTGTGGCCTTTCCGTTACGATGCCCATACAGAGAGCTTGACGAT
CAGTCTGGCATGTGATGCCGCCATCTGTTACTACTTTGGGGTGGTGCACC
TCGGAACGCATGGCGAGCCAATTGAATATCAGTCCATTGACATTCAAAGG
CAGAAACCCCGATGTCCAATCACAGGTTTGTGTCCTCGATGTCATTCCTC
AAGGAAGCTTGCCGTTGCTCCCGTTTTTGCCGCTCTCTGAAAGCTCAGAT
GACGACGGACCCACAGGAGGCGGTGGCGGGGGCGGATGTGGTGGTGACGG
ACACTTGGGTCAGCATGGGCCAGGAGGACGAGTACCAGAAGCGGGATAGG
GACTTTGCAGGCTACCAGGTCAGT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11640:28..2051-

>mRNA_P-wetherbeei_contig11640.1.1 ID=mRNA_P-wetherbeei_contig11640.1.1|Name=mRNA_P-wetherbeei_contig11640.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=612bp|location=Sequence derived from alignment at P-wetherbeei_contig11640:28..2051- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCTTCCAGAAAAGAAGTACGCGGACCCGCGTCTCGACAGAAACAGG
TATGGGATTGCTCGGCGGACGTGCTTTGTTCCTCGGTCCTTCGGACGTCC
AACTTGGAGTAAACGAGAGTATGCGGGACACGGCGCGGGTCCTGTCGGGC
TTCAATAGCCTGATTCTGGCGCGCGTGTTCGGGCATGCGGACGTGATGCA
GCTGGCAGCGGAGGCCTCGGTGCCCGTCATCAATGCCCTCAGCGATTTGC
ACCACCCGCTGCAGACGCTGGCCGATCTGATGACGCTGCACGAACACTTT
GGTGGCCTCGATGGACTCACATTCTCCTGGGTGGGAGACGGCAACAACGT
GCTTCATGACCTGATGCTGGGGGCGGCGAAGCTCGGCATGGGGGCCCACG
TGGCAACGCCGACCGGGTACGAGCCGGATGCCGGCGTCGTTGCCCTCACG
AGAAGCCTCGCGCAGGAAAACGGGAGCAAGCTTCTGATGACGACGGACCC
ACAGGAGGCGGTGGCGGGGGCGGATGTGGTGGTGACGGACACTTGGGTCA
GCATGGGCCAGGAGGACGAGTACCAGAAGCGGGATAGGGACTTTGCAGGC
TACCAGGTCAGT
back to top