mRNA_P-wetherbeei_contig1163.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1163.8.1
Unique NamemRNA_P-wetherbeei_contig1163.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1163.8.1 vs. uniprot
Match: D8LPY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY8_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 5.860e-32
Identity = 122/335 (36.42%), Postives = 167/335 (49.85%), Query Frame = 1 
Query:    1 RELRLWVVGASQLRRASGFGRPDPYAVVTWDGREVGRTAVARSASDPCWYVRHSGGGGHSGSGSGDGGEMG---FVLDAPGTRNPTLRVEIFDWEAIGPHGFLGGVELTQDQLAALRRETSRKARAVTTGAALDQRSLC-LQFELRPRQHGGAPLRATIGLSLGLDREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTEAAVVRVVGQEESDEGD-GALPIPINSG-GGQWKEYYDEIAT--ASYWYNAATGESQWECPDELTASQPRPETAGAVITEE-----------AAAASQAL--QLMWSE--ADQAF-YWLNSVTGEASWE 933
            R+ +LWVV AS L +A  FG+ DPYA V WDGRE+G TAV     +P W+  H+       +G     E     F L+   + NP LRVE++DW+A+G H FLGGVEL   +L  L+R T  KARA   G   DQ+ L   ++ LRP          T+GL L LD E  XXXXXXXXXXXXXX                      E     ++  E++D  D   L    N      W+ YYDE     + +W+N+ TGES W+CP+    +    + +  ++ +E           A A   A   Q+ + E  AD+   +W NSVTGE++W+
Sbjct: 5092 RDRKLWVVNASGLVKADFFGKSDPYAKVFWDGREIGATAVRHKTLNPVWFTEHAPIRQRKATGGAAAQEEDKPYFWLEGTRSTNPRLRVELYDWDAVGSHDFLGGVELDMAELVELQRLTLGKARA--NGGNTDQQMLLKTEYPLRPSGDPKVGGNGTLGLCLYLDLEQKXXXXXXXXXXXXXXQQAIDLALAEVDMK-------NEVLERTLMSAEDADALDMEQLQRQRNEEEASSWQIYYDESTEPPSPWWFNSVTGESTWDCPNVQVETDAATDGSSLIVNDEGEDGGQPQRQLAVAGGNASDWQMFYDEESADEPIPWWYNSVTGESTWD 5417
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BLAST of mRNA_P-wetherbeei_contig1163.8.1 vs. uniprot
Match: A0A7S4DJ98_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJ98_HETAK)

HSP 1 Score: 52.4 bits (124), Expect = 9.000e-5
Identity = 41/122 (33.61%), Postives = 56/122 (45.90%), Query Frame = 1 
Query:   13 LWVVGASQLRRASGFGRPDPYAVVTWDGREVGRTAVARSASDPCWYVRHSGGGGHSGSGSGDGGEMGFVLDAPGTRNPTLRVEIFDWEAIGPH-----GFLGGVELTQDQLAALRRETSRKA 363
            L VVGA+  R+       D YAVV W+G E+GRT V+ ++  P W           G  +G   E  F +  P   +P LR+E+  WE            +G V L  DQ   L +ET+ KA
Sbjct:   13 LRVVGAALRRKL------DVYAVVYWEGIEIGRTPVSYNSKRPLWC--------EDGQTTGKAAEAHFNIPYPTCVDPMLRIEL--WEKAQAKKSKVASLVGKVVLDVDQQKMLMKETASKA 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1163.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPY8_ECTSI5.860e-3236.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4DJ98_HETAK9.000e-533.61Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1163contigP-wetherbeei_contig1163:6623..7621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LPY8
PFAMsBestrophin,C2,Copine
Model size963
Max annot lvl2759|Eukaryota
KEGG koko:K16280
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.61e-33
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota
EC2.3.2.27
Descriptionnegative regulation of response to water deprivation
Cds size963
COG categoryU
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185919.9080956-CDS-P-wetherbeei_contig1163:6622..70691683185919.9080956-CDS-P-wetherbeei_contig1163:6622..7069Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1163 6623..7069 -
1683185919.9220881-CDS-P-wetherbeei_contig1163:7105..76211683185919.9220881-CDS-P-wetherbeei_contig1163:7105..7621Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1163 7106..7621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1163.8.1prot_P-wetherbeei_contig1163.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1163 6623..7621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1163.8.1

>prot_P-wetherbeei_contig1163.8.1 ID=prot_P-wetherbeei_contig1163.8.1|Name=mRNA_P-wetherbeei_contig1163.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=321bp
RELRLWVVGASQLRRASGFGRPDPYAVVTWDGREVGRTAVARSASDPCWY
VRHSGGGGHSGSGSGDGGEMGFVLDAPGTRNPTLRVEIFDWEAIGPHGFL
GGVELTQDQLAALRRETSRKARAVTTGAALDQRSLCLQFELRPRQHGGAP
LRATIGLSLGLDREAESRRGRQRRREGSEVAAAAATAVAAAAVAAAVATA
PTEAAVVRVVGQEESDEGDGALPIPINSGGGQWKEYYDEIATASYWYNAA
TGESQWECPDELTASQPRPETAGAVITEEAAAASQALQLMWSEADQAFYW
LNSVTGEASWERSADASGAAA
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mRNA from alignment at P-wetherbeei_contig1163:6623..7621-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1163.8.1 ID=mRNA_P-wetherbeei_contig1163.8.1|Name=mRNA_P-wetherbeei_contig1163.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=999bp|location=Sequence derived from alignment at P-wetherbeei_contig1163:6623..7621- (Phaeothamnion wetherbeei SAG_119_79)
CGGGAACTGCGGCTGTGGGTGGTGGGCGCGTCCCAGCTCCGGCGGGCGTC
CGGCTTCGGCCGGCCGGACCCGTACGCCGTCGTCACCTGGGACGGCCGCG
AGGTGGGGCGGACCGCCGTTGCCCGGAGCGCCTCCGACCCCTGCTGGTAC
GTGCGGCACTCTGGCGGCGGCGGTCACAGCGGTAGTGGCAGTGGAGACGG
CGGAGAAATGGGATTCGTCCTGGATGCCCCCGGCACCCGCAACCCGACGT
TGCGCGTGGAGATCTTCGACTGGGAGGCCATCGGGCCGCATGGCTTCCTC
GGCGGCGTGGAGCTCACTCAAGACCAGCTGGCCGCGCTGCGGCGAGAGAC
GTCACGAAAGGCGCGGGCAGTCACCACTGGCGCTGCGTTGGACCAGCGGT
CGCTGTGTTTACAGTTTGAGCTGCGGCCTCGGCAGCATGGCGGCGCGCCG
CTGCGGGCCACCATCGGGCTATCGCTGGGCCTCGACCGCGAGGCCGAGTC
GCGCCGCGGGCGGCAGGTGGTGCTGGCCAACGTCATGCGGCGGGAGGAGG
AGCGCCGCCGGGAAGGATCGGAAGTGGCGGCGGCGGCGGCGACAGCAGTG
GCGGCGGCGGCAGTGGCAGCGGCGGTGGCGACAGCGCCGACGGAGGCGGC
GGTGGTAAGGGTTGTCGGTCAGGAAGAGAGTGACGAGGGCGACGGCGCGC
TGCCGATCCCGATCAACAGCGGCGGCGGGCAGTGGAAGGAGTATTACGAT
GAAATTGCCACAGCGTCCTACTGGTACAACGCCGCGACGGGAGAGAGCCA
GTGGGAGTGCCCTGACGAACTGACGGCGTCCCAGCCGCGGCCGGAAACGG
CCGGCGCCGTTATCACGGAGGAGGCGGCAGCCGCCAGCCAGGCGCTGCAG
CTGATGTGGAGCGAAGCCGATCAAGCCTTTTATTGGCTCAACTCGGTGAC
CGGGGAGGCATCGTGGGAGAGGTCGGCCGACGCGAGCGGCGCTGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1163:6623..7621-

>mRNA_P-wetherbeei_contig1163.8.1 ID=mRNA_P-wetherbeei_contig1163.8.1|Name=mRNA_P-wetherbeei_contig1163.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=963bp|location=Sequence derived from alignment at P-wetherbeei_contig1163:6623..7621- (Phaeothamnion wetherbeei SAG_119_79)
CGGGAACTGCGGCTGTGGGTGGTGGGCGCGTCCCAGCTCCGGCGGGCGTC
CGGCTTCGGCCGGCCGGACCCGTACGCCGTCGTCACCTGGGACGGCCGCG
AGGTGGGGCGGACCGCCGTTGCCCGGAGCGCCTCCGACCCCTGCTGGTAC
GTGCGGCACTCTGGCGGCGGCGGTCACAGCGGTAGTGGCAGTGGAGACGG
CGGAGAAATGGGATTCGTCCTGGATGCCCCCGGCACCCGCAACCCGACGT
TGCGCGTGGAGATCTTCGACTGGGAGGCCATCGGGCCGCATGGCTTCCTC
GGCGGCGTGGAGCTCACTCAAGACCAGCTGGCCGCGCTGCGGCGAGAGAC
GTCACGAAAGGCGCGGGCAGTCACCACTGGCGCTGCGTTGGACCAGCGGT
CGCTGTGTTTACAGTTTGAGCTGCGGCCTCGGCAGCATGGCGGCGCGCCG
CTGCGGGCCACCATCGGGCTATCGCTGGGCCTCGACCGCGAGGCCGAGTC
GCGCCGCGGGCGGCAGCGCCGCCGGGAAGGATCGGAAGTGGCGGCGGCGG
CGGCGACAGCAGTGGCGGCGGCGGCAGTGGCAGCGGCGGTGGCGACAGCG
CCGACGGAGGCGGCGGTGGTAAGGGTTGTCGGTCAGGAAGAGAGTGACGA
GGGCGACGGCGCGCTGCCGATCCCGATCAACAGCGGCGGCGGGCAGTGGA
AGGAGTATTACGATGAAATTGCCACAGCGTCCTACTGGTACAACGCCGCG
ACGGGAGAGAGCCAGTGGGAGTGCCCTGACGAACTGACGGCGTCCCAGCC
GCGGCCGGAAACGGCCGGCGCCGTTATCACGGAGGAGGCGGCAGCCGCCA
GCCAGGCGCTGCAGCTGATGTGGAGCGAAGCCGATCAAGCCTTTTATTGG
CTCAACTCGGTGACCGGGGAGGCATCGTGGGAGAGGTCGGCCGACGCGAG
CGGCGCTGCCGCC
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