mRNA_P-wetherbeei_contig11629.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11629.1.1
Unique NamemRNA_P-wetherbeei_contig11629.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.580e-36
Identity = 67/126 (53.17%), Postives = 84/126 (66.67%), Query Frame = 1 
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKWV 378
            M FC EC+NIL+P+E R+ + L+YACN C +R +A + CVYENNLV+T++ KLDIV + V++DPTLQRS    C  C  +EAVFFQA              DDS KS SLSLIFVC +  C  KWV
Sbjct:    1 MRFCKECNNILHPKENRTTRTLFYACNRCAYREEAGQSCVYENNLVKTTELKLDIVHEDVVNDPTLQRSKHQICDRCNYSEAVFFQA--------------DDSAKSSSLSLIFVCTH--CGKKWV 110
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BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: D8LE56_ECTSI (TFIIS-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE56_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 5.660e-35
Identity = 65/128 (50.78%), Postives = 82/128 (64.06%), Query Frame = 1 
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKE-PCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKWVS 381
            M FC EC+NI++P+E ++ ++L Y+CN C +   A+   CVY NNL+ T+  KLDIVQ  V+DDPTLQRS +  C  C   EAVFFQA              D+  KSQSLSLIFVC N+ C HKWVS
Sbjct:  124 MRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQA--------------DEGAKSQSLSLIFVCTNRACGHKWVS 237
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BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A6G0V615_9BILA (DNA-directed RNA polymerase subunit n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0V615_9BILA)

HSP 1 Score: 114 bits (284), Expect = 5.220e-30
Identity = 57/125 (45.60%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKW 375
            + FCP C+N+LYPRE +  +QL Y C +C     A  PC+Y N L+   D    IV D VI+DPTL ++FD  C  C G EAVFFQA++         RRA+D +K     L +VC NK+CVH+W
Sbjct:   23 IKFCPNCNNMLYPREDKDHRQLMYTCRNCDHTELADSPCIYVNKLMHEIDELTQIVAD-VINDPTLPKTFDHVCPKCQGKEAVFFQAQS---------RRAEDEMK-----LYYVCTNKECVHRW 132
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BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A0R3PPZ8_ANGCS (DNA-directed RNA polymerase subunit n=6 Tax=Strongylida TaxID=6308 RepID=A0A0R3PPZ8_ANGCS)

HSP 1 Score: 111 bits (277), Expect = 4.010e-29
Identity = 55/125 (44.00%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKW 375
            + FCPEC+N+LYPRE +  +QL YAC +C  +  A  PC+Y N LV   D    I  D V+ DPTL ++ D PC  CGGT+AVFFQA+T         RRA++ ++     L +VC +  C H+W
Sbjct:    9 IKFCPECNNMLYPREDKEHRQLMYACRNCDHKEVADNPCIYVNKLVHEVDELTQICAD-VVHDPTLPKTEDHPCPRCGGTKAVFFQAQT---------RRAEEEMR-----LYYVCMDTTCSHRW 118
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BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A6S8ESB1_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8ESB1_9STRA)

HSP 1 Score: 110 bits (276), Expect = 5.060e-29
Identity = 49/127 (38.58%), Postives = 76/127 (59.84%), Query Frame = 1 
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKWVS 381
            + FCPEC+N+LYP+E R++K+L   C HC F + A+ P VY + + + +  +LD+V   +  DPTL R++DT C  CGG EAVFF +R+                +   ++L+F+C N  C HKW++
Sbjct:    4 IQFCPECNNMLYPKEDRAEKKLLLTCRHCEFEKPAENPTVYIHKIKKDTAMRLDLVDPALSGDPTLPRTYDTNCEKCGGNEAVFFMSRSGG--------------RDSDMALVFLCVNSACHHKWLN 116
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BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A0N4UVS3_ENTVE (DNA-directed RNA polymerase subunit n=2 Tax=Oxyuridae TaxID=51026 RepID=A0A0N4UVS3_ENTVE)

HSP 1 Score: 110 bits (275), Expect = 8.290e-29
Identity = 55/125 (44.00%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKW 375
            + FCPEC+N+LYP+E +  +QL YAC +C  ++ A  PC+Y N L    D    IV D VI DPTL ++ D PC  C G EAVFFQA++         RRA++ ++     L +VC N DC H+W
Sbjct:   10 IKFCPECNNMLYPKEDKENRQLLYACRNCDHKQIADNPCIYVNKLTHEVDELTQIVAD-VIYDPTLPKTEDHPCPKCKGREAVFFQAQS---------RRAEEEMR-----LYYVCTNPDCTHRW 119
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BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A226DZ96_FOLCA (DNA-directed RNA polymerase subunit n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DZ96_FOLCA)

HSP 1 Score: 110 bits (274), Expect = 1.610e-28
Identity = 55/125 (44.00%), Postives = 74/125 (59.20%), Query Frame = 1 
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKW 375
            + FCPEC+N+LYPRE +  +QL YAC +C +++ A   C+Y N +    D    IV D VI DPTL R+ D PC  C   EAVFFQA+T         RRA+D ++     L +VC N+ C H+W
Sbjct:   21 IKFCPECNNMLYPREDKENRQLLYACRNCDYKQIADNNCIYVNKITHEIDELTHIVSD-VISDPTLPRTEDHPCPKCQSKEAVFFQAQT---------RRAEDEMR-----LYYVCTNQHCTHRW 130
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BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A1P6CBC0_BRUMA (DNA-directed RNA polymerase subunit n=8 Tax=Spirurina TaxID=6274 RepID=A0A1P6CBC0_BRUMA)

HSP 1 Score: 109 bits (273), Expect = 1.670e-28
Identity = 52/125 (41.60%), Postives = 77/125 (61.60%), Query Frame = 1 
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKW 375
            + FCPEC+N+LYP+E +  +QL YAC +C  ++ ++ PC+Y N L+   D    IV D V+ DPTL ++ D PC +C G EAVFFQA++         RRA++ ++     L +VC N  C H+W
Sbjct:   10 IKFCPECNNMLYPKEDKENRQLLYACRNCDHKQLSENPCIYVNKLMHEVDELTQIVAD-VVHDPTLPKTEDHPCPMCRGREAVFFQAQS---------RRAEEEMR-----LYYVCMNPTCAHRW 119
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BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A1D2MG47_ORCCI (DNA-directed RNA polymerase subunit n=2 Tax=Collembola TaxID=30001 RepID=A0A1D2MG47_ORCCI)

HSP 1 Score: 108 bits (271), Expect = 3.350e-28
Identity = 54/125 (43.20%), Postives = 74/125 (59.20%), Query Frame = 1 
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKW 375
            + FCPEC+N+LYPRE +  +QL YAC +C +++ A   C+Y N +    D    IV D VI DPTL R+ D PC  C   EAVFFQA+T         RRA++ ++     L +VC N+ C H+W
Sbjct:   10 IKFCPECNNMLYPREDKENRQLLYACRNCDYKQLADNNCIYVNKITHEIDELTHIVSD-VISDPTLPRTEDHPCPKCQSKEAVFFQAQT---------RRAEEEMR-----LYYVCTNQHCTHRW 119
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BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A1I7XG92_HETBA (DNA-directed RNA polymerase subunit n=1 Tax=Heterorhabditis bacteriophora TaxID=37862 RepID=A0A1I7XG92_HETBA)

HSP 1 Score: 106 bits (265), Expect = 2.720e-27
Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKW 375
            + FCPEC+N+LYPRE +  +QL Y+C +C  ++ A  PC+Y N L+   D    IV D V+ DPTL ++ D PC  CG  +AVFFQA+T         RRA++ ++     L +VC +  C H+W
Sbjct:   10 IKFCPECNNMLYPREDKEHRQLLYSCRNCEHKQVADNPCIYVNKLMHEVDELTQIVAD-VVHDPTLPKTEDHPCPKCGYNQAVFFQAQT---------RRAEEEMR-----LYYVCMDSTCGHRW 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYP5_9STRA1.580e-3653.17DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
D8LE56_ECTSI5.660e-3550.78TFIIS-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A6G0V615_9BILA5.220e-3045.60DNA-directed RNA polymerase subunit n=1 Tax=Halice... [more]
A0A0R3PPZ8_ANGCS4.010e-2944.00DNA-directed RNA polymerase subunit n=6 Tax=Strong... [more]
A0A6S8ESB1_9STRA5.060e-2938.58DNA-directed RNA polymerase subunit n=1 Tax=Aplano... [more]
A0A0N4UVS3_ENTVE8.290e-2944.00DNA-directed RNA polymerase subunit n=2 Tax=Oxyuri... [more]
A0A226DZ96_FOLCA1.610e-2844.00DNA-directed RNA polymerase subunit n=1 Tax=Folsom... [more]
A0A1P6CBC0_BRUMA1.670e-2841.60DNA-directed RNA polymerase subunit n=8 Tax=Spirur... [more]
A0A1D2MG47_ORCCI3.350e-2843.20DNA-directed RNA polymerase subunit n=2 Tax=Collem... [more]
A0A1I7XG92_HETBA2.720e-2741.60DNA-directed RNA polymerase subunit n=1 Tax=Hetero... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11629contigP-wetherbeei_contig11629:783..1900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LE56
Preferred namePOLR2I
PFAMsRNA_POL_M_15KD,TFIIS_C
Model size384
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03017
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000428,GO:0001192,GO:0001193,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006354,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0042221,GO:0042795,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons3
Evalue9.29e-36
EggNOG OGsCOG1594@1|root,KOG2691@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, TFIIS-type
Ec32 orthologEc-00_001020.1
Descriptionmaintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter
Cds size384
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185919.7248974-CDS-P-wetherbeei_contig11629:782..8661683185919.7248974-CDS-P-wetherbeei_contig11629:782..866Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11629 783..866 -
1683185919.7370903-CDS-P-wetherbeei_contig11629:1083..12341683185919.7370903-CDS-P-wetherbeei_contig11629:1083..1234Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11629 1084..1234 -
1683185919.747147-CDS-P-wetherbeei_contig11629:1751..19001683185919.747147-CDS-P-wetherbeei_contig11629:1751..1900Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11629 1752..1900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11629.1.1prot_P-wetherbeei_contig11629.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11629 783..1900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11629.1.1

>prot_P-wetherbeei_contig11629.1.1 ID=prot_P-wetherbeei_contig11629.1.1|Name=mRNA_P-wetherbeei_contig11629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSD
TKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRR
ADDSLKSQSLSLIFVCCNKDCVHKWVS*
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mRNA from alignment at P-wetherbeei_contig11629:783..1900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11629.1.1 ID=mRNA_P-wetherbeei_contig11629.1.1|Name=mRNA_P-wetherbeei_contig11629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1118bp|location=Sequence derived from alignment at P-wetherbeei_contig11629:783..1900- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTTTCTGCCCGGAGTGCTCCAACATCCTCTATCCGCGAGAAATGCG
CTCGCAAAAGCAGCTCTACTACGCCTGCAACCACTGCACATTCAGACGGA
AGGCGAAGGAGCCCTGCGTTTATGAAAACAACCTTGTCCGGACTTCCGAG
TGAGTACACTTTTGAAGGGCTCCTGGCTCCGGCGATCATATTCACTAGAC
TGCGTCTTCAGCATGTCCCTCGAAGCCTTCAGTTCATTTTGATAGCATGG
AATTCATCCTTTTAATATCCCTATTCCTGACGGGAGGGAAGGGATTCCCC
TGTCTTTTCTGGTGGTTGTAAATGGTTGCTCCTCTTTGAGGTGTAGTAGC
GATCCTCCAACGCACTTGCGCGCTTTCTGGTTTTCATGCCAATGCGGTTC
AGATTCGTTGTGGGGCTTGTGCAGGCCTGGCGTACATTCCTAATTTAACA
TCTGTTGCTGCCGAACCCGCGTGCCGTTGCCTGCGGGACCCAATCCTCGC
TGCTGCCCCCTGAAACACGGTCGCCACGGCCTATTCTCCCTTACATTTCG
CCCTGCCGCCCTCCCTTTCCTCTGTCTTCCACCCTGCTGCCATTTCCTTC
TCTTCCTCTTCCACCTCGGCCCGCCTCTCTTGAAAATCCCCGCCCCGATA
ACCCGCTTTCCGACAGCACGAAGCTGGACATTGTGCAGGACGGCGTCATC
GACGATCCGACCCTGCAGCGGAGCTTCGACACGCCGTGCGCCGTCTGCGG
CGGTACCGAGGCCGTCTTCTTCCAGGCACGGACGGCATTGGGTTTCTATT
TATTTATTAAAAGACGGGTACTTGCTTTTTCTTTGGGATTTCACGACCAT
TTGTCGTTATTTTATGTTTGCTATTGGCGTCTGCTTTTCCTGCAAAGTCC
TGCAGTAGTCTAGTTTGTCCCTGTTGTACCTTGCACGTAAAATTAGCCTA
GCCTTCATCGTTCTTCCTTCATGAAGACCAAGGTTCCTCGCTTACTAAAA
CCATTCCGTTAAAAACTGGCCTCCTTCTTGACAGGCGGACGACAGTCTCA
AGTCGCAGTCCCTGTCGCTCATCTTCGTCTGCTGCAACAAGGACTGCGTG
CACAAGTGGGTCAGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11629:783..1900-

>mRNA_P-wetherbeei_contig11629.1.1 ID=mRNA_P-wetherbeei_contig11629.1.1|Name=mRNA_P-wetherbeei_contig11629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig11629:783..1900- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTTTCTGCCCGGAGTGCTCCAACATCCTCTATCCGCGAGAAATGCG
CTCGCAAAAGCAGCTCTACTACGCCTGCAACCACTGCACATTCAGACGGA
AGGCGAAGGAGCCCTGCGTTTATGAAAACAACCTTGTCCGGACTTCCGAC
ACGAAGCTGGACATTGTGCAGGACGGCGTCATCGACGATCCGACCCTGCA
GCGGAGCTTCGACACGCCGTGCGCCGTCTGCGGCGGTACCGAGGCCGTCT
TCTTCCAGGCACGGACGGCATTGGGTTTCTATTTATTTATTAAAAGACGG
GCGGACGACAGTCTCAAGTCGCAGTCCCTGTCGCTCATCTTCGTCTGCTG
CAACAAGGACTGCGTGCACAAGTGGGTCAGCTGA
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