mRNA_P-wetherbeei_contig1161.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1161.1.1
Unique NamemRNA_P-wetherbeei_contig1161.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1161.1.1 vs. uniprot
Match: D7G3D9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D9_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.830e-14
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:   43 KTRLGKVHRRCFAGKEAVDWLLTTSICADAAEALHLLNRMLRRGHIHHVTLDNMVENKSNLHYRFAED 246
            KT LG   + CF+GK AVDW L   +C+D  +A+HLLNRML RG +HH  L  +VE     +YRF +D
Sbjct:   11 KTMLGGTIKACFSGKSAVDWCLQKDLCSDEIDAIHLLNRMLERGLLHHCRLSKLVEPSDTAYYRFPQD 78
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BLAST of mRNA_P-wetherbeei_contig1161.1.1 vs. uniprot
Match: A0A6L5DG61_9INSE (Uncharacterized protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5DG61_9INSE)

HSP 1 Score: 53.5 bits (127), Expect = 2.410e-6
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:   31 LRDRKTRLGKVHRRCFAGKEAVDWLLTTS-ICADAAEALHLLNRMLRRGHIHHVTLDNMVENKSNLHYRFAEDE 249
            LRDRK+  G+V RRC AG E VDWLL+ S +  + ++A+ +   ML  G I HV+ +   ++K  L YRF +DE
Sbjct:  207 LRDRKSSSGRVLRRCGAGSELVDWLLSQSPVVHNRSQAVAMWQAMLEEGVIAHVSQEQPFKDKLLL-YRFWQDE 279
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1161.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3D9_ECTSI1.830e-1450.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6L5DG61_9INSE2.410e-644.59Uncharacterized protein n=1 Tax=Ephemera danica Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1161contigP-wetherbeei_contig1161:650..898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog192875.XP_004364279.1
Preferred nameDEPTOR
PFAMsDEP
Model size249
Max annot lvl2759|Eukaryota
KEGG koko:K20402
KEGG Pathwayko04140,ko04150,map04140,map04150
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001933,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006469,GO:0008150,GO:0008361,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0010941,GO:0016043,GO:0019220,GO:0019222,GO:0023051,GO:0023057,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032006,GO:0032007,GO:0032268,GO:0032269,GO:0032535,GO:0033673,GO:0042325,GO:0042326,GO:0042981,GO:0043067,GO:0043086,GO:0043549,GO:0044092,GO:0044424,GO:0044464,GO:0045792,GO:0045859,GO:0045936,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0071840,GO:0080090,GO:0090066,GO:1902531,GO:1902532,GO:2001233,GO:2001236
Exons1
Evalue4.25e-09
EggNOG OGs28JRH@1|root,2QS4Y@2759|Eukaryota
Descriptionnegative regulation of cell size
Cds size237
COG categoryS
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185918.8130596-CDS-P-wetherbeei_contig1161:649..8861683185918.8130596-CDS-P-wetherbeei_contig1161:649..886Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1161 650..886 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185918.824488-UTR-P-wetherbeei_contig1161:886..8981683185918.824488-UTR-P-wetherbeei_contig1161:886..898Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1161 887..898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1161.1.1prot_P-wetherbeei_contig1161.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1161 650..886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1161.1.1

>prot_P-wetherbeei_contig1161.1.1 ID=prot_P-wetherbeei_contig1161.1.1|Name=mRNA_P-wetherbeei_contig1161.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
MQLGTELRDRKTRLGKVHRRCFAGKEAVDWLLTTSICADAAEALHLLNRM
LRRGHIHHVTLDNMVENKSNLHYRFAEDE
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mRNA from alignment at P-wetherbeei_contig1161:650..898-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1161.1.1 ID=mRNA_P-wetherbeei_contig1161.1.1|Name=mRNA_P-wetherbeei_contig1161.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig1161:650..898- (Phaeothamnion wetherbeei SAG_119_79)
CTCGTGACGAAAATGCAACTGGGCACGGAGCTACGCGACCGAAAAACGCG
GCTCGGGAAGGTCCATCGGCGATGTTTTGCAGGCAAGGAAGCTGTGGATT
GGCTCCTGACTACGAGCATCTGCGCCGACGCGGCCGAGGCCTTGCACCTC
CTAAACCGCATGCTGCGGCGCGGCCACATCCACCACGTGACGCTCGACAA
CATGGTAGAGAACAAATCGAATCTCCACTACCGCTTCGCCGAAGACGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1161:650..898-

>mRNA_P-wetherbeei_contig1161.1.1 ID=mRNA_P-wetherbeei_contig1161.1.1|Name=mRNA_P-wetherbeei_contig1161.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig1161:650..898- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAACTGGGCACGGAGCTACGCGACCGAAAAACGCGGCTCGGGAAGGT
CCATCGGCGATGTTTTGCAGGCAAGGAAGCTGTGGATTGGCTCCTGACTA
CGAGCATCTGCGCCGACGCGGCCGAGGCCTTGCACCTCCTAAACCGCATG
CTGCGGCGCGGCCACATCCACCACGTGACGCTCGACAACATGGTAGAGAA
CAAATCGAATCTCCACTACCGCTTCGCCGAAGACGAA
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