mRNA_P-wetherbeei_contig11609.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11609.1.1
Unique NamemRNA_P-wetherbeei_contig11609.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11609.1.1 vs. uniprot
Match: UPI00164EC333 (DUF1028 domain-containing protein n=1 Tax=Ramlibacter sp. GTP1 TaxID=2079448 RepID=UPI00164EC333)

HSP 1 Score: 255 bits (652), Expect = 5.170e-84
Identity = 117/152 (76.97%), Postives = 138/152 (90.79%), Query Frame = 1
Query:   19 MTFTVVARDAKTGLLGIAQSTNPLSVGGRCPFIRANVGAVSTQAYTDPGLGPLAIELLALGHSPEKVLKELGETDPHFQYRQIGVVDRHGRSAVHSGSECKTHTKAISGDNYVVMGNMLVTDKVVPEMDRAWRETEGQLFEDRLLAAVVAGR 474
            MTF ++ARD  TGLLG+AQ+TNPLSVGGRCPFIRANVGAVSTQAYTDPGLGPLAIELL LGHSP+KV+KELGE+DPHF++RQIG+VDRHGR+AVH+G +CK H+ AI GD Y+VMGN L+TD+VVP+MD AWR +EG+LFE+RLLAA VA R
Sbjct:    1 MTFCIIARDKATGLLGLAQATNPLSVGGRCPFIRANVGAVSTQAYTDPGLGPLAIELLTLGHSPQKVIKELGESDPHFEWRQIGIVDRHGRAAVHTGKQCKVHSGAIVGDGYLVMGNYLLTDQVVPKMDEAWRNSEGKLFEERLLAAAVAAR 152          
BLAST of mRNA_P-wetherbeei_contig11609.1.1 vs. uniprot
Match: UPI001994BA4E (DUF1028 domain-containing protein n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=UPI001994BA4E)

HSP 1 Score: 246 bits (628), Expect = 2.300e-80
Identity = 119/152 (78.29%), Postives = 134/152 (88.16%), Query Frame = 1
Query:   19 MTFTVVARDAKTGLLGIAQSTNPLSVGGRCPFIRANVGAVSTQAYTDPGLGPLAIELLALGHSPEKVLKELGETDPHFQYRQIGVVDRHGRSAVHSGSECKTHTKAISGDNYVVMGNMLVTDKVVPEMDRAWRETEGQLFEDRLLAAVVAGR 474
            MTFTVVARD  +GLLGIAQSTNPLSVG RCPFIRANVGAVSTQAYTDPGLGPLAIELLALG+SPEKVL E+ ++DP FQYRQIG+VDRHGR AVH+G+E K H  AI GD YVVMGN+L + +V+PEMDRAW E+EGQLFE+RL+  VVAGR
Sbjct:    1 MTFTVVARDKASGLLGIAQSTNPLSVGARCPFIRANVGAVSTQAYTDPGLGPLAIELLALGYSPEKVLAEIAQSDPGFQYRQIGIVDRHGRVAVHTGNEAKDHKGAIMGDGYVVMGNLLGSAQVLPEMDRAWHESEGQLFEERLMRVVVAGR 152          
BLAST of mRNA_P-wetherbeei_contig11609.1.1 vs. uniprot
Match: A0A2M8U8T9_9PROT (Pilus assembly protein n=1 Tax=Ferrovibrio sp. TaxID=1917215 RepID=A0A2M8U8T9_9PROT)

HSP 1 Score: 241 bits (615), Expect = 2.180e-78
Identity = 111/152 (73.03%), Postives = 134/152 (88.16%), Query Frame = 1
Query:   19 MTFTVVARDAKTGLLGIAQSTNPLSVGGRCPFIRANVGAVSTQAYTDPGLGPLAIELLALGHSPEKVLKELGETDPHFQYRQIGVVDRHGRSAVHSGSECKTHTKAISGDNYVVMGNMLVTDKVVPEMDRAWRETEGQLFEDRLLAAVVAGR 474
            MTFT+VARD  TGLLGIAQSTNPLSVG RCPFIRANVGAVSTQAYTDPGLGPLAIELL+LGHSPEKV+ ELGE+DP + +RQIG+VDRHGR A H+GSE K +  A+ GD YVVMGN+L+TD+V+P+M++AWR++ G+LFE+RL+  + AGR
Sbjct:    1 MTFTIVARDKDTGLLGIAQSTNPLSVGARCPFIRANVGAVSTQAYTDPGLGPLAIELLSLGHSPEKVIAELGESDPGYAWRQIGIVDRHGRVAAHTGSEAKNYKGAVIGDGYVVMGNLLLTDQVLPDMEKAWRDSAGELFEERLMRVITAGR 152          
BLAST of mRNA_P-wetherbeei_contig11609.1.1 vs. uniprot
Match: A0A5C8PN86_9HYPH (DUF1028 domain-containing protein n=2 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PN86_9HYPH)

HSP 1 Score: 234 bits (598), Expect = 1.750e-75
Identity = 108/158 (68.35%), Postives = 136/158 (86.08%), Query Frame = 1
Query:    1 NRNRHPMTFTVVARDAKTGLLGIAQSTNPLSVGGRCPFIRANVGAVSTQAYTDPGLGPLAIELLALGHSPEKVLKELGETDPHFQYRQIGVVDRHGRSAVHSGSECKTHTKAISGDNYVVMGNMLVTDKVVPEMDRAWRETEGQLFEDRLLAAVVAGR 474
            +R  H MTFT+VAR+ ++GLLGIAQSTNPLSVG RCPFIRANVGAVSTQAYTDPGLGPLAIELL+LG++PEKV+ E+G +D  F YRQIG+VDRHGR AVH+G+E K H  A++GD YVVMGN+L + +V+P+M+RAWR++ G+LFE+RL+  + AGR
Sbjct:   18 HRRNHTMTFTIVAREKESGLLGIAQSTNPLSVGARCPFIRANVGAVSTQAYTDPGLGPLAIELLSLGYAPEKVMAEIGASDAGFAYRQIGMVDRHGRVAVHTGAEAKQHKGALTGDGYVVMGNLLGSAQVLPDMERAWRDSAGELFEERLMRVITAGR 175          
BLAST of mRNA_P-wetherbeei_contig11609.1.1 vs. uniprot
Match: UPI0009301889 (DUF1028 domain-containing protein n=1 Tax=Hyphomicrobium sp. CS1BSMeth3 TaxID=1892844 RepID=UPI0009301889)

HSP 1 Score: 217 bits (552), Expect = 6.290e-69
Identity = 105/152 (69.08%), Postives = 127/152 (83.55%), Query Frame = 1
Query:   19 MTFTVVARDAKTGLLGIAQSTNPLSVGGRCPFIRANVGAVSTQAYTDPGLGPLAIELLALGHSPEKVLKELGETDPHFQYRQIGVVDRHGRSAVHSGSECKTHTKAISGDNYVVMGNMLVTDKVVPEMDRAWRETEGQLFEDRLLAAVVAGR 474
            MTFT +AR+    LLGIAQ TNPL+VGGRCPFIRANVGAVSTQAYTDPGLGPLAIELL +GHSPEKVLKEL ETDP F +RQIG+VDRHGR+AVH+G   K +  +I+GD Y+VMGN L +D+VV +M+ A+  ++G++ EDRLLAA+ AGR
Sbjct:    1 MTFTAIAREGN--LLGIAQCTNPLAVGGRCPFIRANVGAVSTQAYTDPGLGPLAIELLTMGHSPEKVLKELSETDPGFAWRQIGIVDRHGRAAVHTGDSNKDYKGSITGDGYLVMGNYLKSDRVVKDMNEAFLASKGKILEDRLLAAITAGR 150          
BLAST of mRNA_P-wetherbeei_contig11609.1.1 vs. uniprot
Match: A0A315DUW0_9BURK (Uncharacterized protein n=1 Tax=Limnohabitans sp. 2KL-51 TaxID=1977911 RepID=A0A315DUW0_9BURK)

HSP 1 Score: 202 bits (513), Expect = 6.720e-63
Identity = 94/152 (61.84%), Postives = 123/152 (80.92%), Query Frame = 1
Query:   19 MTFTVVARDAKTGLLGIAQSTNPLSVGGRCPFIRANVGAVSTQAYTDPGLGPLAIELLALGHSPEKVLKELGETDPHFQYRQIGVVDRHGRSAVHSGSECKTHTKAISGDNYVVMGNMLVTDKVVPEMDRAWRETEGQLFEDRLLAAVVAGR 474
            MTFT+VARD KTG LGIA +T+P++VGGRCP IR+N+ AVSTQA T+P LGPLA+ELL +G +P+KVL+EL   D  + +RQIG+VDR GRSAVH+G +CK H  AI+G+ Y+VMGN L + +VVP MD AWR +EG+  E+R++AA+VAGR
Sbjct:    1 MTFTIVARDPKTGQLGIALTTSPMAVGGRCPNIRSNMAAVSTQAATNPALGPLALELLGMGFTPQKVLQELAGADDQYAWRQIGIVDREGRSAVHTGIQCKGHADAITGEGYLVMGNYLASAEVVPSMDLAWRNSEGEPLENRMMAALVAGR 152          
BLAST of mRNA_P-wetherbeei_contig11609.1.1 vs. uniprot
Match: UPI001478DA61 (DUF1028 domain-containing protein n=1 Tax=Rhodoligotrophos appendicifer TaxID=987056 RepID=UPI001478DA61)

HSP 1 Score: 157 bits (398), Expect = 1.910e-45
Identity = 79/151 (52.32%), Postives = 106/151 (70.20%), Query Frame = 1
Query:   22 TFTVVARDAKTGLLGIAQSTNPLSVGGRCPFIRANVGAVSTQAYTDPGLGPLAIELLALGHSPEKVLKELGETDPHFQYRQIGVVDRHGRSAVHSGSECKTHTKAISGDNYVVMGNMLVTDKVVPEMDRAWRETEGQLFEDRLLAAVVAGR 474
            TFTVV R  + GLLG+A +++PLSV  RC FI ANV AV+TQAY  PGLGPLA++LL LG+SPEKVL+E+  +D   ++RQ+ +VD++G SAV +G +        +G NYVVMGN LV   VV  M+ AW  +E QL E+RL+  + AG+
Sbjct:   10 TFTVVGRCPREGLLGVALTSSPLSVAARCSFIEANVAAVATQAYAHPGLGPLALKLLKLGYSPEKVLREIRSSDNFPEHRQLAIVDKNGNSAVFTGEKNLDWKGHKNGQNYVVMGNYLVGPDVVEAMEDAWLASESQLLEERLVRTIEAGK 160          
BLAST of mRNA_P-wetherbeei_contig11609.1.1 vs. uniprot
Match: A0A5N9GJQ5_9CHLR (DUF1028 domain-containing protein n=1 Tax=SAR202 cluster bacterium TaxID=2030829 RepID=A0A5N9GJQ5_9CHLR)

HSP 1 Score: 154 bits (388), Expect = 4.270e-44
Identity = 75/151 (49.67%), Postives = 104/151 (68.87%), Query Frame = 1
Query:   22 TFTVVARDAKTGLLGIAQSTNPLSVGGRCPFIRANVGAVSTQAYTDPGLGPLAIELLALGHSPEKVLKELGETDPHFQYRQIGVVDRHGRSAVHSGSECKTHTKAISGDNYVVMGNMLVTDKVVPEMDRAWRETEGQLFEDRLLAAVVAGR 474
            TF+V+ R  +TG LG+  +T  L+V  RCPF++ANVGAV+TQA TDP LG LAI LL  G S  K L+E+  +DPH +YRQIG++DR G +A  +G+E +     I+G NYV MGN+L+   VV  M  A+ ++ G+L E+RLL ++ AGR
Sbjct:   11 TFSVIGRCKETGALGVGITTRALAVASRCPFVKANVGAVATQASTDPRLGHLAINLLQNGFSAYKALQEVTASDPHIEYRQIGIIDRDGNAAARTGNENRDWAGHITGSNYVAMGNVLLGAHVVEAMAEAFEQSSGELLEERLLRSIEAGR 161          
BLAST of mRNA_P-wetherbeei_contig11609.1.1 vs. uniprot
Match: A0A5N8YUS3_9CHLR (DUF1028 domain-containing protein n=1 Tax=SAR202 cluster bacterium AD-804-J14_MRT_500m TaxID=2587836 RepID=A0A5N8YUS3_9CHLR)

HSP 1 Score: 150 bits (380), Expect = 9.630e-43
Identity = 76/150 (50.67%), Postives = 104/150 (69.33%), Query Frame = 1
Query:   22 TFTVVARDAKTGLLGIAQSTNPLSVGGRCPFIRANVGAVSTQAYTDPGLGPLAIELLALGHSPEKVLKELGETDPHFQYRQIGVVDRHGRSAVHSGSECKTHTKAISGDNYVVMGNMLVTDKVVPEMDRAWRETEGQLFEDRLLAAVVAG 471
            TF+++ R  +TG+LGIA +T+ L VG RCP+IR  VGAVSTQA TDP LGP AI LLALG+S  +V++E+  +DPH + RQ+GVVD+ G SA  +GS        ++G NYV MGN LV ++VV  M   + +  G+  E+RLL A++AG
Sbjct:   11 TFSIIGRCTRTGMLGIAITTSDLCVGSRCPYIRPLVGAVSTQAATDPRLGPFAIRLLALGYSASRVIEEIETSDPHIERRQLGVVDQDGGSAARTGSLNAPWAGHVTGANYVAMGNALVGEQVVRSMALVFEDKGGEDLENRLLQAILAG 160          
BLAST of mRNA_P-wetherbeei_contig11609.1.1 vs. uniprot
Match: A0A5N9G3C5_9CHLR (DUF1028 domain-containing protein n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A5N9G3C5_9CHLR)

HSP 1 Score: 148 bits (374), Expect = 2.880e-41
Identity = 71/152 (46.71%), Postives = 104/152 (68.42%), Query Frame = 1
Query:   19 MTFTVVARDAKTGLLGIAQSTNPLSVGGRCPFIRANVGAVSTQAYTDPGLGPLAIELLALGHSPEKVLKELGETDPHFQYRQIGVVDRHGRSAVHSGSECKTHTKAISGDNYVVMGNMLVTDKVVPEMDRAWRETEGQLFEDRLLAAVVAGR 474
            +T+T++ R  +T  LGI  +T  L VGG CPF+++NV A+S+QA  DP LG LA+ LL  G+SP +V++EL  TDPHF++RQIG+VD+ G + VH+G+  +  T  ++GD Y  MGN   ++KVV  M R + ETE    ++RLL ++ AGR
Sbjct:   51 VTYTIIGRCRRTRQLGIGITTWSLGVGGYCPFVKSNVAALSSQAAADPRLGRLAMRLLEFGYSPARVIQELRSTDPHFEHRQIGIVDKDGNAVVHTGTSTRPWTGHLTGDGYASMGNTSDSEKVVQAMARVFEETEDLDLDERLLLSLEAGR 202          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11609.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00164EC3335.170e-8476.97DUF1028 domain-containing protein n=1 Tax=Ramlibac... [more]
UPI001994BA4E2.300e-8078.29DUF1028 domain-containing protein n=1 Tax=Burkhold... [more]
A0A2M8U8T9_9PROT2.180e-7873.03Pilus assembly protein n=1 Tax=Ferrovibrio sp. Tax... [more]
A0A5C8PN86_9HYPH1.750e-7568.35DUF1028 domain-containing protein n=2 Tax=Vineibac... [more]
UPI00093018896.290e-6969.08DUF1028 domain-containing protein n=1 Tax=Hyphomic... [more]
A0A315DUW0_9BURK6.720e-6361.84Uncharacterized protein n=1 Tax=Limnohabitans sp. ... [more]
UPI001478DA611.910e-4552.32DUF1028 domain-containing protein n=1 Tax=Rhodolig... [more]
A0A5N9GJQ5_9CHLR4.270e-4449.67DUF1028 domain-containing protein n=1 Tax=SAR202 c... [more]
A0A5N8YUS3_9CHLR9.630e-4350.67DUF1028 domain-containing protein n=1 Tax=SAR202 c... [more]
A0A5N9G3C5_9CHLR2.880e-4146.71DUF1028 domain-containing protein n=3 Tax=Chlorofl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11609contigP-wetherbeei_contig11609:3..476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog693977.Deipr_0677
Preferred namefimA
PFAMsDUF1028,PG_binding_2
Model size474
Max annot lvl1297|Deinococcus-Thermus
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.65e-36
EggNOG OGsCOG3342@1|root,COG3342@2|Bacteria,1WIWT@1297|Deinococcus-Thermus
Descriptionpeptidoglycan binding domain
Cds size456
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185918.7273686-CDS-P-wetherbeei_contig11609:2..4581683185918.7273686-CDS-P-wetherbeei_contig11609:2..458Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11609 3..458 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185918.736643-UTR-P-wetherbeei_contig11609:458..4761683185918.736643-UTR-P-wetherbeei_contig11609:458..476Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11609 459..476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11609.1.1prot_P-wetherbeei_contig11609.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11609 3..458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11609.1.1

>prot_P-wetherbeei_contig11609.1.1 ID=prot_P-wetherbeei_contig11609.1.1|Name=mRNA_P-wetherbeei_contig11609.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MTFTVVARDAKTGLLGIAQSTNPLSVGGRCPFIRANVGAVSTQAYTDPGL
GPLAIELLALGHSPEKVLKELGETDPHFQYRQIGVVDRHGRSAVHSGSEC
KTHTKAISGDNYVVMGNMLVTDKVVPEMDRAWRETEGQLFEDRLLAAVVA
GR
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mRNA from alignment at P-wetherbeei_contig11609:3..476-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11609.1.1 ID=mRNA_P-wetherbeei_contig11609.1.1|Name=mRNA_P-wetherbeei_contig11609.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig11609:3..476- (Phaeothamnion wetherbeei SAG_119_79)
AACCGGAATCGACACCCCATGACATTCACCGTAGTCGCACGCGACGCGAA GACCGGCCTGCTCGGCATCGCCCAGTCCACCAATCCCCTGTCCGTCGGCG GGCGCTGCCCGTTCATCCGCGCAAACGTCGGCGCGGTCAGCACGCAGGCC TACACGGACCCCGGCCTCGGGCCGCTCGCGATCGAGCTGCTTGCGCTCGG CCATTCGCCCGAAAAGGTCCTCAAGGAGCTCGGCGAGACCGATCCCCATT TCCAGTACCGCCAGATCGGCGTCGTCGACCGCCACGGGCGCAGCGCCGTC CACTCGGGCAGCGAGTGCAAGACGCACACCAAGGCGATCAGCGGCGACAA CTACGTCGTCATGGGCAACATGCTGGTGACGGACAAGGTCGTGCCTGAGA TGGACCGCGCGTGGCGCGAGACCGAAGGCCAGCTGTTCGAGGACCGTTTA CTCGCCGCGGTCGTCGCCGGGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11609:3..476-

>mRNA_P-wetherbeei_contig11609.1.1 ID=mRNA_P-wetherbeei_contig11609.1.1|Name=mRNA_P-wetherbeei_contig11609.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig11609:3..476- (Phaeothamnion wetherbeei SAG_119_79)
ATGACATTCACCGTAGTCGCACGCGACGCGAAGACCGGCCTGCTCGGCAT
CGCCCAGTCCACCAATCCCCTGTCCGTCGGCGGGCGCTGCCCGTTCATCC
GCGCAAACGTCGGCGCGGTCAGCACGCAGGCCTACACGGACCCCGGCCTC
GGGCCGCTCGCGATCGAGCTGCTTGCGCTCGGCCATTCGCCCGAAAAGGT
CCTCAAGGAGCTCGGCGAGACCGATCCCCATTTCCAGTACCGCCAGATCG
GCGTCGTCGACCGCCACGGGCGCAGCGCCGTCCACTCGGGCAGCGAGTGC
AAGACGCACACCAAGGCGATCAGCGGCGACAACTACGTCGTCATGGGCAA
CATGCTGGTGACGGACAAGGTCGTGCCTGAGATGGACCGCGCGTGGCGCG
AGACCGAAGGCCAGCTGTTCGAGGACCGTTTACTCGCCGCGGTCGTCGCC
GGGCGC
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