mRNA_P-wetherbeei_contig11608.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11608.1.1
Unique NamemRNA_P-wetherbeei_contig11608.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11608.1.1 vs. uniprot
Match: D7FK49_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK49_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 4.830e-6
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 3 
Query:  396 EALNMCPNHADALVARGASLASRGRLAAAAADFRQALSIDPAGRNASEYLRKTTARLEQ 572
            +AL MCP+H D LVARGA+ A+ GRL  A  D  +ALS++P   NAS YL++T  R+E+
Sbjct:  307 QALGMCPDHDDGLVARGAAFATTGRLRQAVQDLSRALSVNPQNGNASSYLKETRRRMER 365
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11608.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK49_ECTSI4.830e-652.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11608contigP-wetherbeei_contig11608:173..1633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FK49
Preferred nameTTC14
PFAMsTPR_11,TPR_2,TPR_8
Model size1461
Max annot lvl2759|Eukaryota
KEGG koko:K17908
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.23e-07
EggNOG OGs28H66@1|root,2QPJ1@2759|Eukaryota
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_005830.1
DescriptionTPR repeat
Cds size1104
COG categoryS
BRITEko00000,ko00001,ko02000,ko03029,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185918.67829-UTR-P-wetherbeei_contig11608:172..4201683185918.67829-UTR-P-wetherbeei_contig11608:172..420Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11608 173..420 +
1683185918.6968417-UTR-P-wetherbeei_contig11608:1524..16331683185918.6968417-UTR-P-wetherbeei_contig11608:1524..1633Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11608 1525..1633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185918.6873772-CDS-P-wetherbeei_contig11608:420..15241683185918.6873772-CDS-P-wetherbeei_contig11608:420..1524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11608 421..1524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11608.1.1prot_P-wetherbeei_contig11608.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11608 421..1524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11608.1.1

>prot_P-wetherbeei_contig11608.1.1 ID=prot_P-wetherbeei_contig11608.1.1|Name=mRNA_P-wetherbeei_contig11608.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=368bp
MCISSRKLSGIPGADYYPILMPRPFDHSFYPLPPPTALVAARRVPPPGGE
ALNMCPNHADALVARGASLASRGRLAAAAADFRQALSIDPAGRNASEYLR
KTTARLEQAGGVGLGLGLGRSLEPGGSAGAAGGGMVGGVGVGGGSEEGGD
GGYGVVGAAASAAKLAGLGAAAAGSGAVGGAAAATGGNGWEMEFAGDDFD
PEKEALRRMRAMLEAEAEERRKRKHGRHGSDADSTIGSSDGSSSGGGAGR
RRERRDKRRRRRRRRQNEADDEDGEGEGRQRKKHKKHKKYKKHKKHKRSR
KSSPPGERTDASDGASGAESDGVFLLPMADSGTGTGIGASAAAAGRDTVP
SPPPHPILARRTKGLWG*
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mRNA from alignment at P-wetherbeei_contig11608:173..1633+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11608.1.1 ID=mRNA_P-wetherbeei_contig11608.1.1|Name=mRNA_P-wetherbeei_contig11608.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1461bp|location=Sequence derived from alignment at P-wetherbeei_contig11608:173..1633+ (Phaeothamnion wetherbeei SAG_119_79)
CGCAAGCTGGCGGACGAGCGCGTCAGCAAAGGCGCCATGTTTGCCAAGCA
GGGAAAGCATGAGGAAGCTGCGCGGTACTACGAACAAGGTGCGGAGGGAG
GCGCCGGCCCGGCCCAAACTTGTTCGCCGCTTTGTTCGTCAATGTCGAGC
GGCGGTCCCAGAGGCGCGGTTGCACGCTTGTATTGCATTGTCTCTTGTCA
TTTTGCATAACTTCGACCACGCTGTGGCGGCGTTGACCTCGTTACTTTAT
GTGCATTTCATCTAGAAAATTGAGCGGAATTCCTGGAGCGGACTACTATC
CCATTCTGATGCCTCGGCCCTTCGACCATTCTTTTTACCCACTGCCGCCG
CCCACTGCTCTTGTCGCCGCTCGCCGTGTGCCGCCGCCGGGGGGCGAAGC
ACTCAACATGTGCCCGAACCACGCGGACGCGCTGGTGGCGCGGGGAGCGT
CACTGGCCAGCCGCGGCCGCCTGGCCGCCGCCGCCGCCGACTTTCGGCAG
GCGTTGTCCATCGACCCGGCGGGCCGCAACGCGTCCGAATACCTGCGAAA
GACGACGGCGCGGCTGGAGCAGGCTGGAGGCGTCGGGCTCGGGCTCGGGC
TCGGAAGGAGTCTTGAACCCGGCGGGAGCGCAGGAGCAGCGGGCGGAGGA
ATGGTTGGCGGCGTCGGCGTCGGGGGAGGGAGCGAGGAGGGCGGCGACGG
CGGCTACGGCGTCGTTGGGGCGGCAGCCTCTGCTGCGAAGCTGGCGGGCC
TGGGAGCAGCGGCGGCTGGCAGCGGAGCAGTAGGAGGAGCAGCAGCAGCA
ACTGGCGGCAATGGGTGGGAGATGGAGTTCGCCGGGGACGATTTCGATCC
GGAAAAGGAGGCGCTGCGGCGGATGCGTGCGATGCTCGAAGCGGAAGCGG
AGGAGCGGCGGAAACGGAAGCACGGCCGCCATGGCTCGGATGCGGATTCC
ACCATCGGCAGCAGCGATGGCAGCAGCAGTGGCGGTGGGGCGGGCCGCAG
GCGTGAGCGGCGGGATAAGCGGCGACGGCGGCGGCGGCGGCGGCAGAACG
AGGCAGACGACGAGGACGGTGAAGGTGAGGGCCGTCAGCGCAAGAAGCAC
AAGAAGCACAAGAAGTACAAAAAGCACAAAAAGCACAAGCGGAGTAGAAA
GAGCTCGCCGCCGGGAGAGCGCACAGACGCGTCAGACGGCGCCTCGGGTG
CCGAGAGCGACGGCGTGTTCCTGCTGCCAATGGCAGACAGTGGGACAGGG
ACAGGGATAGGTGCCAGCGCTGCAGCAGCAGGGCGGGACACGGTTCCGTC
GCCGCCGCCGCATCCCATCCTCGCTCGCCGTACGAAAGGGCTATGGGGTT
AATGGAAAGGCTGCTGTTCCTTTTCTTTTGCTTAACTATTCTGCAGGAGG
TCGCAATCCTGCATCGCAGGTCGCGGCGTGAACATTTTGGGTATTGGCCA
CCTCCATCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11608:173..1633+

>mRNA_P-wetherbeei_contig11608.1.1 ID=mRNA_P-wetherbeei_contig11608.1.1|Name=mRNA_P-wetherbeei_contig11608.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1104bp|location=Sequence derived from alignment at P-wetherbeei_contig11608:173..1633+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCATTTCATCTAGAAAATTGAGCGGAATTCCTGGAGCGGACTACTA
TCCCATTCTGATGCCTCGGCCCTTCGACCATTCTTTTTACCCACTGCCGC
CGCCCACTGCTCTTGTCGCCGCTCGCCGTGTGCCGCCGCCGGGGGGCGAA
GCACTCAACATGTGCCCGAACCACGCGGACGCGCTGGTGGCGCGGGGAGC
GTCACTGGCCAGCCGCGGCCGCCTGGCCGCCGCCGCCGCCGACTTTCGGC
AGGCGTTGTCCATCGACCCGGCGGGCCGCAACGCGTCCGAATACCTGCGA
AAGACGACGGCGCGGCTGGAGCAGGCTGGAGGCGTCGGGCTCGGGCTCGG
GCTCGGAAGGAGTCTTGAACCCGGCGGGAGCGCAGGAGCAGCGGGCGGAG
GAATGGTTGGCGGCGTCGGCGTCGGGGGAGGGAGCGAGGAGGGCGGCGAC
GGCGGCTACGGCGTCGTTGGGGCGGCAGCCTCTGCTGCGAAGCTGGCGGG
CCTGGGAGCAGCGGCGGCTGGCAGCGGAGCAGTAGGAGGAGCAGCAGCAG
CAACTGGCGGCAATGGGTGGGAGATGGAGTTCGCCGGGGACGATTTCGAT
CCGGAAAAGGAGGCGCTGCGGCGGATGCGTGCGATGCTCGAAGCGGAAGC
GGAGGAGCGGCGGAAACGGAAGCACGGCCGCCATGGCTCGGATGCGGATT
CCACCATCGGCAGCAGCGATGGCAGCAGCAGTGGCGGTGGGGCGGGCCGC
AGGCGTGAGCGGCGGGATAAGCGGCGACGGCGGCGGCGGCGGCGGCAGAA
CGAGGCAGACGACGAGGACGGTGAAGGTGAGGGCCGTCAGCGCAAGAAGC
ACAAGAAGCACAAGAAGTACAAAAAGCACAAAAAGCACAAGCGGAGTAGA
AAGAGCTCGCCGCCGGGAGAGCGCACAGACGCGTCAGACGGCGCCTCGGG
TGCCGAGAGCGACGGCGTGTTCCTGCTGCCAATGGCAGACAGTGGGACAG
GGACAGGGATAGGTGCCAGCGCTGCAGCAGCAGGGCGGGACACGGTTCCG
TCGCCGCCGCCGCATCCCATCCTCGCTCGCCGTACGAAAGGGCTATGGGG
TTAA
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