mRNA_P-wetherbeei_contig11604.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11604.1.1
Unique NamemRNA_P-wetherbeei_contig11604.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11604.1.1 vs. uniprot
Match: D8LLJ7_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ7_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 2.550e-34
Identity = 62/75 (82.67%), Postives = 63/75 (84.00%), Query Frame = 3 
Query:  276 TVPGLLSMANSGPNTNGCQFFITTAKCEWLDGKHTVFGKVLDAPSMLTVRKIENVGTGPGNKPRLPVVIAECGEL 500
            T PGLLSMANSGPNTNGCQFF+TTAK  WLDG H VFGKVLD  SMLTVRKIENV TG  NKPRL VVI ECGEL
Sbjct:  111 TGPGLLSMANSGPNTNGCQFFVTTAKAAWLDGLHVVFGKVLDPASMLTVRKIENVSTGVNNKPRLTVVIQECGEL 185
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BLAST of mRNA_P-wetherbeei_contig11604.1.1 vs. uniprot
Match: A0A821YYP6_9NEOB (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821YYP6_9NEOB)

HSP 1 Score: 124 bits (310), Expect = 1.330e-33
Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = 3 
Query:  276 TVPGLLSMANSGPNTNGCQFFITTAKCEWLDGKHTVFGKVLDAPSMLTVRKIENVGTGPGNKPRLPVVIAECGEL 500
            + PGLLSMANSGP TNGCQFFIT +KC+WLDGKH VFGKV+D   +L +RKIENV TGP NKP+LPVVIA+CGE+
Sbjct:   27 SAPGLLSMANSGPGTNGCQFFITCSKCDWLDGKHVVFGKVIDG--LLVMRKIENVPTGPNNKPKLPVVIAQCGEM 99
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BLAST of mRNA_P-wetherbeei_contig11604.1.1 vs. uniprot
Match: A0A673G8K3_9TELE (Peptidyl-prolyl cis-trans isomerase n=6 Tax=Sinocyclocheilus TaxID=75365 RepID=A0A673G8K3_9TELE)

HSP 1 Score: 126 bits (316), Expect = 2.340e-33
Identity = 58/85 (68.24%), Postives = 70/85 (82.35%), Query Frame = 3 
Query:  282 PGLLSMANSGPNTNGCQFFITTAKCEWLDGKHTVFGKVLDAPSMLTVRKIENVGTGPGNKPRLPVVIAECGEL*GTLRLEIRKNE 536
            PGLLS+ANSGP TNGCQFFIT  KC+WLDGKH VFGKV+D   +L +RKIENV TGP NKP+LP+VIA+CGE+ G LR+ +  N+
Sbjct:  107 PGLLSLANSGPGTNGCQFFITCTKCDWLDGKHVVFGKVVDG--LLVMRKIENVPTGPNNKPKLPIVIAQCGEMNGRLRVFLPLNK 189
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BLAST of mRNA_P-wetherbeei_contig11604.1.1 vs. uniprot
Match: A0A401PCH2_SCYTO (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401PCH2_SCYTO)

HSP 1 Score: 123 bits (309), Expect = 2.770e-33
Identity = 55/73 (75.34%), Postives = 64/73 (87.67%), Query Frame = 3 
Query:  282 PGLLSMANSGPNTNGCQFFITTAKCEWLDGKHTVFGKVLDAPSMLTVRKIENVGTGPGNKPRLPVVIAECGEL 500
            PGLLSMANSGPNTNGCQFFIT +KC+WLDGKH VFGK++D   +L +RKIENV  GP NKP+LPVVIA+CGE+
Sbjct:   42 PGLLSMANSGPNTNGCQFFITCSKCDWLDGKHVVFGKIIDG--LLVMRKIENVPAGPSNKPKLPVVIAQCGEM 112
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BLAST of mRNA_P-wetherbeei_contig11604.1.1 vs. uniprot
Match: A0A4W3HLR6_CALMI (Peptidyl-prolyl cis-trans isomerase n=4 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3HLR6_CALMI)

HSP 1 Score: 124 bits (312), Expect = 3.090e-33
Identity = 55/78 (70.51%), Postives = 67/78 (85.90%), Query Frame = 3 
Query:  267 VAATVPGLLSMANSGPNTNGCQFFITTAKCEWLDGKHTVFGKVLDAPSMLTVRKIENVGTGPGNKPRLPVVIAECGEL 500
            V  ++PG LSMANSGPNTNGCQFFIT +KC+WLDGKH VFGK++D   +L +RKIENV TGP NKP+LPV+IA+CGE+
Sbjct:   76 VKHSLPGFLSMANSGPNTNGCQFFITCSKCDWLDGKHVVFGKIIDG--LLVMRKIENVPTGPNNKPKLPVIIAQCGEM 151
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BLAST of mRNA_P-wetherbeei_contig11604.1.1 vs. uniprot
Match: A0A7K7XJP2_9PASS (Peptidyl-prolyl cis-trans isomerase (Fragment) n=13 Tax=Neognathae TaxID=8825 RepID=A0A7K7XJP2_9PASS)

HSP 1 Score: 122 bits (306), Expect = 6.030e-33
Identity = 54/75 (72.00%), Postives = 66/75 (88.00%), Query Frame = 3 
Query:  276 TVPGLLSMANSGPNTNGCQFFITTAKCEWLDGKHTVFGKVLDAPSMLTVRKIENVGTGPGNKPRLPVVIAECGEL 500
            + PGLLSMANSGP+TNGCQFFIT +KC+WLDGKH VFGK++D   +L +RKIENV TGP NKP+LPVVI++CGE+
Sbjct:   31 SAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIVDG--LLVMRKIENVPTGPNNKPKLPVVISQCGEM 103
[Close]
BLAST of mRNA_P-wetherbeei_contig11604.1.1 vs. uniprot
Match: A0A851X3G8_9CORV (Peptidyl-prolyl cis-trans isomerase (Fragment) n=30 Tax=Neognathae TaxID=8825 RepID=A0A851X3G8_9CORV)

HSP 1 Score: 122 bits (306), Expect = 6.030e-33
Identity = 54/75 (72.00%), Postives = 66/75 (88.00%), Query Frame = 3 
Query:  276 TVPGLLSMANSGPNTNGCQFFITTAKCEWLDGKHTVFGKVLDAPSMLTVRKIENVGTGPGNKPRLPVVIAECGEL 500
            + PGLLSMANSGP+TNGCQFFIT +KC+WLDGKH VFGK++D   +L +RKIENV TGP NKP+LPVVI++CGE+
Sbjct:   31 SAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIVDG--LLVMRKIENVPTGPNNKPKLPVVISQCGEM 103
[Close]
BLAST of mRNA_P-wetherbeei_contig11604.1.1 vs. uniprot
Match: A0A0D2VUF6_GOSRA (Peptidyl-prolyl cis-trans isomerase n=12 Tax=rosids TaxID=71275 RepID=A0A0D2VUF6_GOSRA)

HSP 1 Score: 125 bits (313), Expect = 6.440e-33
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 3 
Query:  276 TVPGLLSMANSGPNTNGCQFFITTAKCEWLDGKHTVFGKVLDAPSMLTVRKIENVGTGPGNKPRLPVVIAECGEL 500
            T PGLLSMANSGPNTNGCQFFIT AKCEWLD KH VFG+VL   S+L VRKIENV TGP N+P+LP +IAECGE+
Sbjct:  116 TGPGLLSMANSGPNTNGCQFFITCAKCEWLDNKHVVFGRVL-GDSLLVVRKIENVATGPNNRPKLPCIIAECGEM 189
[Close]
BLAST of mRNA_P-wetherbeei_contig11604.1.1 vs. uniprot
Match: A0A6P4M8P7_GOSAR (Peptidyl-prolyl cis-trans isomerase n=10 Tax=rosids TaxID=71275 RepID=A0A6P4M8P7_GOSAR)

HSP 1 Score: 125 bits (313), Expect = 6.440e-33
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 3 
Query:  276 TVPGLLSMANSGPNTNGCQFFITTAKCEWLDGKHTVFGKVLDAPSMLTVRKIENVGTGPGNKPRLPVVIAECGEL 500
            T PGLLSMANSGPNTNGCQFFIT AKCEWLD KH VFG+VL   S+L VRKIENV TGP N+P+LP +IAECGE+
Sbjct:  116 TGPGLLSMANSGPNTNGCQFFITCAKCEWLDNKHVVFGRVL-GDSLLVVRKIENVATGPNNRPKLPCIIAECGEM 189
[Close]
BLAST of mRNA_P-wetherbeei_contig11604.1.1 vs. uniprot
Match: A0A1U8KBD6_GOSHI (Peptidyl-prolyl cis-trans isomerase n=34 Tax=malvids TaxID=91836 RepID=A0A1U8KBD6_GOSHI)

HSP 1 Score: 125 bits (313), Expect = 6.810e-33
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 3 
Query:  276 TVPGLLSMANSGPNTNGCQFFITTAKCEWLDGKHTVFGKVLDAPSMLTVRKIENVGTGPGNKPRLPVVIAECGEL 500
            T PGLLSMANSGPNTNGCQFFIT AKCEWLD KH VFG+VL   S+L VRKIENV TGP N+P+LP +IAECGE+
Sbjct:  118 TGPGLLSMANSGPNTNGCQFFITCAKCEWLDNKHVVFGRVL-GDSLLVVRKIENVATGPNNRPKLPCIIAECGEM 191
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11604.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLJ7_ECTSI2.550e-3482.67Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A821YYP6_9NEOB1.330e-3374.67Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A673G8K3_9TELE2.340e-3368.24Peptidyl-prolyl cis-trans isomerase n=6 Tax=Sinocy... [more]
A0A401PCH2_SCYTO2.770e-3375.34Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A4W3HLR6_CALMI3.090e-3370.51Peptidyl-prolyl cis-trans isomerase n=4 Tax=Callor... [more]
A0A7K7XJP2_9PASS6.030e-3372.00Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A851X3G8_9CORV6.030e-3372.00Peptidyl-prolyl cis-trans isomerase (Fragment) n=3... [more]
A0A0D2VUF6_GOSRA6.440e-3377.33Peptidyl-prolyl cis-trans isomerase n=12 Tax=rosid... [more]
A0A6P4M8P7_GOSAR6.440e-3377.33Peptidyl-prolyl cis-trans isomerase n=10 Tax=rosid... [more]
A0A1U8KBD6_GOSHI6.810e-3377.33Peptidyl-prolyl cis-trans isomerase n=34 Tax=malvi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11604contigP-wetherbeei_contig11604:705..1496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LLJ7
Preferred namePPIH
PFAMsPro_isomerase
Model size542
Max annot lvl2759|Eukaryota
KEGG koko:K09567
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006457,GO:0006464,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016018,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0022607,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0033218,GO:0034641,GO:0036211,GO:0042277,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045069,GO:0045070,GO:0045292,GO:0046483,GO:0046540,GO:0048518,GO:0048524,GO:0050789,GO:0050792,GO:0065003,GO:0065007,GO:0070013,GO:0071001,GO:0071704,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140096,GO:1901360,GO:1901564,GO:1903900,GO:1903902,GO:1990904
Exons2
Evalue1.87e-33
EggNOG OGsCOG0652@1|root,KOG0879@2759|Eukaryota
Ec32 ortholog descriptionCyclophilin-type peptidyl-prolyl cis-trans isomerase
Ec32 orthologEc-04_005600.1
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
Cds size207
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185918.5018935-UTR-P-wetherbeei_contig11604:704..7431683185918.5018935-UTR-P-wetherbeei_contig11604:704..743Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11604 705..743 -
1683185918.541058-UTR-P-wetherbeei_contig11604:1200..14961683185918.541058-UTR-P-wetherbeei_contig11604:1200..1496Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11604 1201..1496 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185918.5222566-CDS-P-wetherbeei_contig11604:743..9221683185918.5222566-CDS-P-wetherbeei_contig11604:743..922Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11604 744..922 -
1683185918.5323067-CDS-P-wetherbeei_contig11604:1172..12001683185918.5323067-CDS-P-wetherbeei_contig11604:1172..1200Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11604 1173..1200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11604.1.1prot_P-wetherbeei_contig11604.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11604 744..1200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11604.1.1

>prot_P-wetherbeei_contig11604.1.1 ID=prot_P-wetherbeei_contig11604.1.1|Name=mRNA_P-wetherbeei_contig11604.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
MANSGPNTNGCQFFITTAKCEWLDGKHTVFGKVLDAPSMLTVRKIENVGT
GPGNKPRLPVVIAECGEL*
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mRNA from alignment at P-wetherbeei_contig11604:705..1496-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11604.1.1 ID=mRNA_P-wetherbeei_contig11604.1.1|Name=mRNA_P-wetherbeei_contig11604.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=792bp|location=Sequence derived from alignment at P-wetherbeei_contig11604:705..1496- (Phaeothamnion wetherbeei SAG_119_79)
GTGGAGTAGGAGATGGAATGGGAGATGGTTTTACGTGCCATTGGCGCGTG
TGTCTTTGGGATGTCGTGAGAGCTTAAAGCCGTTGCTTTCTAATCTTCTC
TTTTGATGATTTGGCTAGATGGTTTTACCGCGTGGTCCCCACTGCTGCAA
GGAGATTGATGTCCTGCATTTGTGGTAACAGTTCCTTTGCTAAGATCGCG
GACTCCCTAATTCCCGCTTCTTCCGCTGCACCGTTATTCTGACGTCTTCT
GAAAAACCACGAATGCGTGGCCGCTACAGTTCCCGGACTGCTTTCAATGG
CAAATAGCGGACCAAACACAAACGGTGAGATGATGTAGGCAGCAAGTTGG
AGTGCAGTTAATGCTAGCCTCTCTTTTCCAATTCCGTTGGGTGTACGTTC
CAGGGTGGAGGTATAGTGCACTCTATGCACCCTTTTGCACCCCGTACACT
CATGCATTGTTCAGCGATTTTCAGTTGGTGGGCAGGCAGCGGCCGTGGAA
GAAAGAAAGCAGTGTTTGACCTTGTCGCCATGCCGCCAATGCCGCTTGCC
GTCGATTTCCCGATTGTGGTGCAGGCTGCCAGTTCTTCATCACGACGGCG
AAGTGCGAATGGCTGGACGGGAAGCACACCGTCTTCGGCAAGGTGCTGGA
CGCGCCGTCCATGCTGACCGTCCGCAAGATCGAGAACGTCGGGACCGGCC
CGGGCAACAAGCCGCGACTGCCGGTGGTTATCGCCGAGTGCGGAGAGTTA
TGAGGGACGCTCCGCCTCGAAATAAGAAAGAATGAAATAAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11604:705..1496-

>mRNA_P-wetherbeei_contig11604.1.1 ID=mRNA_P-wetherbeei_contig11604.1.1|Name=mRNA_P-wetherbeei_contig11604.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig11604:705..1496- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAATAGCGGACCAAACACAAACGGCTGCCAGTTCTTCATCACGAC
GGCGAAGTGCGAATGGCTGGACGGGAAGCACACCGTCTTCGGCAAGGTGC
TGGACGCGCCGTCCATGCTGACCGTCCGCAAGATCGAGAACGTCGGGACC
GGCCCGGGCAACAAGCCGCGACTGCCGGTGGTTATCGCCGAGTGCGGAGA
GTTATGA
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