mRNA_P-wetherbeei_contig11602.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11602.2.1
Unique NamemRNA_P-wetherbeei_contig11602.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11602.2.1 vs. uniprot
Match: UPI0006530D51 (hypothetical protein n=1 Tax=Caenimonas sp. SL110 TaxID=1450524 RepID=UPI0006530D51)

HSP 1 Score: 70.1 bits (170), Expect = 1.270e-13
Identity = 42/93 (45.16%), Postives = 53/93 (56.99%), Query Frame = 1
Query:    1 MLKWFDGAAAEAQADRAVEEIARLVPKVELSAPGDGR----RKQVARLDRTIDGHRREAAAAGYNIYKKAKFANRVKWKLRDAGYPDDFIDSV 267
            +LKWFD AA +A AD  V+      P  E S  G  +    RK  A L + + G RR+      NIYKKA+ ANR KW L++AGYP+ FID V
Sbjct:    2 VLKWFDTAAVDAFADAMVKMFVSRFPASEFSVGGKKQEARFRKVQATLAQELTGFRRKHPL---NIYKKARLANRFKWALKEAGYPESFIDEV 91          
BLAST of mRNA_P-wetherbeei_contig11602.2.1 vs. uniprot
Match: UPI000365BCDF (hypothetical protein n=1 Tax=Thiomonas sp. FB-6 TaxID=1158291 RepID=UPI000365BCDF)

HSP 1 Score: 66.2 bits (160), Expect = 3.920e-12
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    1 MLKWFDGAAAEAQADRAVEEIARLVPK----VELSAPGDGRRKQVARLDRTIDGHRREAAAAGYNIYKKAKFANRVKWKLRDAGYPDDFIDSVVRLLII 285
            +L+WFD A    QA    EE+AR        +  ++PG    K+   L R +   R  AAA   N YKKAK +NR+KW L+D G+ DDF+D +V+ +++
Sbjct:    3 LLRWFDAA----QASAFGEELARYCDSELRAIAAASPGKREDKRRKLLARVLQRARDFAAAHPLNTYKKAKLSNRLKWTLKDLGHEDDFVDLLVKEIVL 97          
BLAST of mRNA_P-wetherbeei_contig11602.2.1 vs. uniprot
Match: UPI0019BDC9AD (Uncharacterized protein n=1 Tax=Ramlibacter sp. TaxID=1917967 RepID=UPI0019BDC9AD)

HSP 1 Score: 64.3 bits (155), Expect = 2.340e-11
Identity = 38/93 (40.86%), Postives = 50/93 (53.76%), Query Frame = 1
Query:    1 MLKWFDGAAAEAQADRAVEEIARLVPKVELSAPGDGR----RKQVARLDRTIDGHRREAAAAGYNIYKKAKFANRVKWKLRDAGYPDDFIDSV 267
            + KWFD A  +A AD  V+      P  E +A G  +    RK  A L R +   R++      NIY+KA+ ANR KW L+DA YPD FID +
Sbjct:    2 VFKWFDTAEVDAFADATVKMFMERFPPSEFTAAGKKQQERFRKVHAALSREMQAFRKKKTL---NIYQKARLANRFKWALKDAAYPDAFIDEL 91          
BLAST of mRNA_P-wetherbeei_contig11602.2.1 vs. uniprot
Match: A0A844ARP2_9BURK (Uncharacterized protein n=1 Tax=Caenimonas koreensis DSM 17982 TaxID=1121255 RepID=A0A844ARP2_9BURK)

HSP 1 Score: 60.1 bits (144), Expect = 2.640e-9
Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 1
Query:    1 MLKWFDGAAAEAQADRAVEEIARLVPKVELSAPGDGR----RKQVARLDRTIDGHRREAAAAGYNIYKKAKFANRVKWKLRDAGYPDDFIDSV 267
            + KWFD    +A AD+ V+      P  E +  G  +    RK  A L R +   R+  +    NIY+KA+ ANR KW L+DA YPD FID +
Sbjct:   44 VFKWFDTLEVDAFADKTVKMFMERFPPSEFTTAGKKQQERFRKVHAALAREMQDFRKTHSL---NIYQKARLANRFKWALKDAAYPDAFIDEL 133          
BLAST of mRNA_P-wetherbeei_contig11602.2.1 vs. uniprot
Match: A0A536SW72_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SW72_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 2.870e-8
Identity = 34/95 (35.79%), Postives = 51/95 (53.68%), Query Frame = 1
Query:   10 WFDGAAAEAQADRAVEEIARLVPKVELSAPGDGRRKQVARLDRTIDG--HRREAAAAGY--NIYKKAKFANRVKWKLRDAGYPDDFIDSVVRLLI 282
            WF+    +  AD  V ++ +  P   +  P    +K   RL +T D    R EA A     N+YKKA   NRVKW L++AGYP++F+D++   L+
Sbjct:    5 WFNCKEVDEFADTIVADLVKRFPPSGVGVPA---KKAAERLKKTHDSIFARIEAFARAQQLNLYKKAHLGNRVKWALKEAGYPEEFVDALTYELV 96          
BLAST of mRNA_P-wetherbeei_contig11602.2.1 vs. uniprot
Match: UPI001997D89E (Uncharacterized protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI001997D89E)

HSP 1 Score: 53.1 bits (126), Expect = 6.120e-7
Identity = 33/92 (35.87%), Postives = 43/92 (46.74%), Query Frame = 1
Query:    1 MLKWFDGAAAEAQADRAVEEIARLVPKVELSAPGDGRRKQVARLDRTIDGHRREAAAAGY----NIYKKAKFANRVKWKLRDAGYPDDFIDS 264
            MLKWFD    +  AD    EI +  P   L       +K   RL +  D       A  +    N YK+A+  NR+KW +RDAGYP  F +S
Sbjct:    1 MLKWFDCKEVDKFADWVAVEIIKRYPPTGLDTDS---KKSAQRLKKVHDSLFVRVEAFAWENKLNFYKRARLGNRIKWAMRDAGYPLPFSES 89          
BLAST of mRNA_P-wetherbeei_contig11602.2.1 vs. uniprot
Match: A0A537C456_9PROT (Uncharacterized protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537C456_9PROT)

HSP 1 Score: 52.4 bits (124), Expect = 1.350e-6
Identity = 31/88 (35.23%), Postives = 47/88 (53.41%), Query Frame = 1
Query:    1 MLKWFDGAAAEAQADRAVEEIARLVPKVELS-APGDGRRKQVARLDRTIDGHRREAAAAGYNIYKKAKFANRVKWKLRDAGYPDDFID 261
            +L WF     +  AD  V E+ +  P+  L  +      + + +LDR +    R AA    N+Y+KA F NRVKW L++AGYP  F++
Sbjct:    2 LLDWFSRKDVDEFADSIVAELLQHFPQAGLDVSTKKTAERAMKKLDRMLLRISRFAAEHRPNLYQKACFGNRVKWALKEAGYPAPFVE 89          
BLAST of mRNA_P-wetherbeei_contig11602.2.1 vs. uniprot
Match: A0A536Y799_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536Y799_9PROT)

HSP 1 Score: 51.6 bits (122), Expect = 2.530e-6
Identity = 32/96 (33.33%), Postives = 49/96 (51.04%), Query Frame = 1
Query:    1 MLKWFDGAAAEAQADRAVEEIARLVPK--VELSAPGDGRRKQVARLDRTIDGHRREAAAAGYNIYKKAKFANRVKWKLRDAGYPDDFIDSVVRLLI 282
            +L WF     +  AD  V E+ +  P+  V+LS       K +  LDR        AA    N+Y+KA F NR+KW L++A YP+ F+++    L+
Sbjct:    2 VLDWFSRKHIDEFADSIVTELRQQFPQAGVDLSTRKSAE-KALRTLDRIFSRISAFAAERRPNLYQKACFGNRIKWALKEARYPEPFVEAATDKLV 96          
BLAST of mRNA_P-wetherbeei_contig11602.2.1 vs. uniprot
Match: A0A8D5G9Y8_9PROT (Uncharacterized protein n=1 Tax=Methyloradius palustris TaxID=2778876 RepID=A0A8D5G9Y8_9PROT)

HSP 1 Score: 50.8 bits (120), Expect = 3.820e-6
Identity = 32/99 (32.32%), Postives = 48/99 (48.48%), Query Frame = 1
Query:    1 MLKWFDGAAAEAQADRAVEEIARLVPKVELS----APGDGRRKQVARLDRTIDGHRREAAAAGYNIYKKAKFANRVKWKLRDAGYPDDFIDSVVRLLII 285
            M+KW +   A    +   E  AR +P VE           RR  +  + R ID  + E +    N YKKAK  N  KWKL +AG+  D +DS+ + +++
Sbjct:    1 MIKWLNAKEAVEFGESLAEFFARRIPLVEEENQRVISKANRRAVLNEMVRKIDKFKSEHSM---NFYKKAKLGNAFKWKLLEAGFAADIVDSLTKQILL 96          
BLAST of mRNA_P-wetherbeei_contig11602.2.1 vs. uniprot
Match: A0A1F4CVQ4_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CVQ4_9PROT)

HSP 1 Score: 50.8 bits (120), Expect = 4.820e-6
Identity = 34/98 (34.69%), Postives = 49/98 (50.00%), Query Frame = 1
Query:    1 MLKWFDGAAAEAQADRAVEEIARLVPK--VELSAPGDGRR--KQVARLDRTIDGHRREAAAAGYNIYKKAKFANRVKWKLRDAGYPDDFIDSVVRLLI 282
            +L W +    +  AD  V E+  L P   V+LS      R  K+V RL   +    R       N+YKKA+F NRVKW L++A YP  F++ +   L+
Sbjct:    2 VLSWLNTKEVDEFADAVVAELLELFPPAGVDLSTRKSAERAMKKVDRLMLRVSEFARNRRL---NLYKKARFGNRVKWALKEAQYPVHFVEVMTHGLV 96          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11602.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
UPI0006530D511.270e-1345.16hypothetical protein n=1 Tax=Caenimonas sp. SL110 ... [more]
UPI000365BCDF3.920e-1238.38hypothetical protein n=1 Tax=Thiomonas sp. FB-6 Ta... [more]
UPI0019BDC9AD2.340e-1140.86Uncharacterized protein n=1 Tax=Ramlibacter sp. Ta... [more]
A0A844ARP2_9BURK2.640e-938.71Uncharacterized protein n=1 Tax=Caenimonas koreens... [more]
A0A536SW72_9PROT2.870e-835.79Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
UPI001997D89E6.120e-735.87Uncharacterized protein n=1 Tax=Prolixibacteraceae... [more]
A0A537C456_9PROT1.350e-635.23Uncharacterized protein n=2 Tax=Betaproteobacteria... [more]
A0A536Y799_9PROT2.530e-633.33Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A8D5G9Y8_9PROT3.820e-632.32Uncharacterized protein n=1 Tax=Methyloradius palu... [more]
A0A1F4CVQ4_9PROT4.820e-634.69Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11602contigP-wetherbeei_contig11602:862..1149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog395495.Lcho_0488
Model size288
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000276
EggNOG OGs2911D@1|root,2ZNNZ@2|Bacteria,1P8DV@1224|Proteobacteria,2W5MI@28216|Betaproteobacteria
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185918.397353-CDS-P-wetherbeei_contig11602:861..11491683185918.397353-CDS-P-wetherbeei_contig11602:861..1149Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11602 862..1149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11602.2.1prot_P-wetherbeei_contig11602.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11602 862..1149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11602.2.1

>prot_P-wetherbeei_contig11602.2.1 ID=prot_P-wetherbeei_contig11602.2.1|Name=mRNA_P-wetherbeei_contig11602.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=96bp
MLKWFDGAAAEAQADRAVEEIARLVPKVELSAPGDGRRKQVARLDRTIDG
HRREAAAAGYNIYKKAKFANRVKWKLRDAGYPDDFIDSVVRLLII*
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mRNA from alignment at P-wetherbeei_contig11602:862..1149-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11602.2.1 ID=mRNA_P-wetherbeei_contig11602.2.1|Name=mRNA_P-wetherbeei_contig11602.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig11602:862..1149- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGAAATGGTTTGATGGCGCCGCAGCCGAAGCGCAGGCCGACCGTGC GGTCGAAGAGATCGCACGCCTGGTGCCCAAAGTGGAACTCTCCGCACCTG GCGATGGCCGCAGGAAGCAGGTGGCCAGGCTCGACCGGACAATCGACGGC CACCGGCGGGAAGCGGCGGCTGCCGGATACAACATCTACAAGAAGGCCAA GTTCGCCAACCGCGTGAAGTGGAAGTTGCGCGACGCAGGCTATCCGGATG ACTTCATCGATTCGGTAGTGCGGCTGCTGATCATCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11602:862..1149-

>mRNA_P-wetherbeei_contig11602.2.1 ID=mRNA_P-wetherbeei_contig11602.2.1|Name=mRNA_P-wetherbeei_contig11602.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig11602:862..1149- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGAAATGGTTTGATGGCGCCGCAGCCGAAGCGCAGGCCGACCGTGC
GGTCGAAGAGATCGCACGCCTGGTGCCCAAAGTGGAACTCTCCGCACCTG
GCGATGGCCGCAGGAAGCAGGTGGCCAGGCTCGACCGGACAATCGACGGC
CACCGGCGGGAAGCGGCGGCTGCCGGATACAACATCTACAAGAAGGCCAA
GTTCGCCAACCGCGTGAAGTGGAAGTTGCGCGACGCAGGCTATCCGGATG
ACTTCATCGATTCGGTAGTGCGGCTGCTGATCATCTGA
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