mRNA_P-wetherbeei_contig11575.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11575.2.1
Unique NamemRNA_P-wetherbeei_contig11575.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11575.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11575contigP-wetherbeei_contig11575:1516..1860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog55529.EKX53635
PFAMsPKD_channel
Model size345
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons1
Evalue2.53e-07
EggNOG OGs2E9J0@1|root,2SFWN@2759|Eukaryota
DescriptionPolycystin cation channel
Cds size324
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185917.068867-UTR-P-wetherbeei_contig11575:1515..15361683185917.068867-UTR-P-wetherbeei_contig11575:1515..1536Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11575 1516..1536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185917.0771465-CDS-P-wetherbeei_contig11575:1536..18601683185917.0771465-CDS-P-wetherbeei_contig11575:1536..1860Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11575 1537..1860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11575.2.1prot_P-wetherbeei_contig11575.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11575 1537..1860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11575.2.1

>prot_P-wetherbeei_contig11575.2.1 ID=prot_P-wetherbeei_contig11575.2.1|Name=mRNA_P-wetherbeei_contig11575.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
MRHPAVISGRQLRAAVDTKNIVRYLAAFNSFMIIVRFFKVARFLPRANLL
VKTVAIALVDLIHYAAVFLFVLVSFAVEGWVVFGHRVAAFGTLWDGIQTS
MLVVMGAF
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mRNA from alignment at P-wetherbeei_contig11575:1516..1860+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11575.2.1 ID=mRNA_P-wetherbeei_contig11575.2.1|Name=mRNA_P-wetherbeei_contig11575.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig11575:1516..1860+ (Phaeothamnion wetherbeei SAG_119_79)
TCATGGCTATCTAACGTTTCGATGCGTCATCCCGCCGTTATTTCTGGTCG
CCAGCTGCGGGCGGCGGTGGACACCAAGAATATCGTGCGTTACCTGGCGG
CCTTCAACAGTTTCATGATAATCGTGCGCTTCTTCAAGGTGGCGCGCTTC
CTGCCGCGCGCCAACCTGCTGGTCAAGACTGTCGCCATCGCTCTTGTGGA
TCTGATTCACTACGCCGCCGTATTCCTCTTCGTCCTGGTCAGCTTCGCTG
TCGAGGGCTGGGTGGTGTTCGGCCACCGGGTCGCGGCGTTCGGCACACTG
TGGGACGGCATCCAGACCAGCATGCTCGTCGTAATGGGTGCGTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11575:1516..1860+

>mRNA_P-wetherbeei_contig11575.2.1 ID=mRNA_P-wetherbeei_contig11575.2.1|Name=mRNA_P-wetherbeei_contig11575.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig11575:1516..1860+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCATCCCGCCGTTATTTCTGGTCGCCAGCTGCGGGCGGCGGTGGA
CACCAAGAATATCGTGCGTTACCTGGCGGCCTTCAACAGTTTCATGATAA
TCGTGCGCTTCTTCAAGGTGGCGCGCTTCCTGCCGCGCGCCAACCTGCTG
GTCAAGACTGTCGCCATCGCTCTTGTGGATCTGATTCACTACGCCGCCGT
ATTCCTCTTCGTCCTGGTCAGCTTCGCTGTCGAGGGCTGGGTGGTGTTCG
GCCACCGGGTCGCGGCGTTCGGCACACTGTGGGACGGCATCCAGACCAGC
ATGCTCGTCGTAATGGGTGCGTTC
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