mRNA_P-wetherbeei_contig1154.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1154.6.1
Unique NamemRNA_P-wetherbeei_contig1154.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1154.6.1 vs. uniprot
Match: D8LSM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM7_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 1.430e-64
Identity = 164/416 (39.42%), Postives = 230/416 (55.29%), Query Frame = 1 
Query:  292 LFAFPPTQRRPRARPMADETLDDVLPVQQRVIKYLTDDRLFAAQLVCSIYYLANVLACALQPSGAPRGCYEGALVAVMLKNMAAVFSRLQRILVPHLLYEPERYGKFRDRVTLLAADPAVQSLVYCTIFLLLPLGRALAPLALREAVYLACAAAEILGLAAPRLHAVLAALLERPLAALLTGGNVKKLRAMDAPARRSLLGRRVAQLSLKLELALIGALLLRVYAPGVIGPS-------------------------RVTFAAKFVALGAVYVQLLAIKNAQLGDDIKLFRGLRVGGVPAGWLDSLLDSVLFSGMLGVPWWLGLLVPAMQAMDPRGPLVRQLRDGGSPTKMLRERLFDLIVGRDRSKEDXXXXXXXXXGSGGENAAAPDAAGSELHDPTGVEGIFKVARVAVGLTN 1464
            LF+FPP  R  R    A++ L +VLPVQQR++KYLT+DR+F  Q++CSIY+  + +A  L  S    G Y+ AL  + LK    V  R++R+LVPHL+YEP+RY K+R RV+ LA DPAVQ +VYC IF+L+PL  AL PL L+E+VYL     E L + AP L   L  L E  ++  +T G+ +K R   A  +R LLGRR+AQ   KLE+ +   + LRV  P V+  S                         R     K + L   YV+LL +KN QL DD+++  GL++ G    W++  +DSV+F  M+G PWW GLL  A   + P   + +++       K L   L +  +GR    +D XXXXXXXXGSG E   +           + +  I KVA VA G+++
Sbjct:  258 LFSFPPGPRVRRTE--AEDGLQEVLPVQQRLVKYLTEDRVFGVQILCSIYFFMSAVAY-LMDSTKFGGSYQAALAVLTLKQWGTVVGRVRRVLVPHLIYEPQRYVKYRARVSALALDPAVQGIVYCGIFMLMPLSLALIPLLLKESVYLLWVMKEALQITAPGLVETLTTLSEPLMSVFMTAGDSEKWRDTPAGEKRLLLGRRLAQACFKLEMVMPFGVALRVL-PAVLQTSLGAGGGVADGEGAEGAAAGAGGQLGRALPLVKVLVLVMAYVKLLVVKNGQLEDDVRILSGLKIRGYDCEWIERGVDSVVFGMMVGCPWWAGLLAVAFSLL-PNHEVTKKVMASDDKLKTLGMTLLNKAIGRTPGADDDXXXXXXXXGSG-EKDGSSXXXXXXXXXXSRMAKIAKVAAVATGVSD 667
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BLAST of mRNA_P-wetherbeei_contig1154.6.1 vs. uniprot
Match: A0A835YJH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH6_9STRA)

HSP 1 Score: 216 bits (550), Expect = 4.690e-57
Identity = 131/300 (43.67%), Postives = 186/300 (62.00%), Query Frame = 1 
Query:  325 RARPMADETLDDVLPVQQRVIKYLTDDRLFAAQLVCSIYYLAN--VLACALQP--SGAPRGCYEGALVAVMLKNMAAVFSRLQRILVPHLLYEPERYGKFRDRVTLLAADPAVQSLVYCTIFLLL--PLGRALAPLALREAVYLACAAAEILGLAAPRLHAVLAALLERPLAALLTGGNVKKLRAMDAPARRSLLGRRVAQLSLKLELALIGALLLRVYAPGVIGPSRVTFAAKFVALGAVYVQLLAIKNAQLGDDIKLFRGLRVGGVPAGWLDSLLDSVLFSGMLGVPWWLGLLVPAMQ 1206
            +A   A+  LD  LP+QQR+IKY TDD+LF  Q+  S+Y+ AN  +LA +  P  S A    Y+GAL+A+++K    V  R++R LVP L  EP ++G FR R   LA DPAVQ+ ++C + L    PL  ALAPLALRE  YL   A E++ +AAPR    L AL+  P A L+  G+V+  RAM   A+   +GRRV+Q   KLE+A +GA LLR Y   +   +++  AA F      Y QLL++++AQLG D+++  GL++GGV  GWL+ ++DS L++ MLG+P W   L+   Q
Sbjct:   27 QAHTAAEAGLDGFLPLQQRLIKYFTDDKLFTVQIAGSLYFAANAAILALSSAPDASAARARAYQGALLALIIKYWCVVLGRMRRTLVPGLAREPGKFGLFRARARALARDPAVQTSLFCALALTRQPPLSAALAPLALREGAYLFLVAREVVSIAAPRALPALGALVRWPAAVLVAKGDVRAWRAMGEGAQLVEVGRRVSQACFKLEVAALGAALLRDYPRAMKADNKLAAAAAFALYIGAYAQLLSVRHAQLGGDVRVLSGLKLGGVGLGWLELVVDSALYARMLGLPRWTAFLMAVFQ 326
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BLAST of mRNA_P-wetherbeei_contig1154.6.1 vs. uniprot
Match: A0A836CE38_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE38_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.160e-38
Identity = 125/362 (34.53%), Postives = 181/362 (50.00%), Query Frame = 1 
Query:  217 ADEDAAATAGARATATLASPLATPSLFAFPPTQRRPRARPMADETLDDVLPVQQRVIKYLTDDRLFAAQLVCSIYYLANVLACALQPSGA---PRGCYEGALVAVMLKNMAAVFSRLQRILVPHLLYEP------ERYGKFRDRVTLLAADPAVQSLVYCTIFLLLPLGRA----------------LAPLALREAVYLACAAAEILGLAAP--RLHAVLAALLERPLAALLTGGNVKKLRAMDAPARRSLLGRRVAQLSLKLELALIGALLLRVYAPGVIGPSRVTFAAKFVALGAVYVQLLAIKNAQLGDDIKLFRG-LRVGGVPAGWLDSLLDSVLFSGMLGVPWWLGLLVPAMQAMDP 1218
            ADE   +T+ +  T+T +S    P LF  P   R  RA  +A+  L+  LP+QQR+++Y TDDR FA Q   S+++ A+       PS A   P   Y  AL  V  KN A +  R++R+ +P LL           Y +FR R   LA DPA Q+LVYC   L+  LG +                  PL + E  +L           AP   L A  + L + P+AAL+  G+VK  + M     R+ +GRRVAQ SLKLE+A++  +LLRVY   +  P+++   A F    + + + L +++AQLG D ++  G   + GVP   L+ LLDS  ++  LG+P W G      QA  P
Sbjct:   90 ADEPQTSTSASWPTSTSSSEKLAPPLFNAP--LRPGRAHTVAEAGLEGFLPLQQRLVRYFTDDRAFALQAAGSLWFAAHAALTLAAPSAAAMDPLRMYRSALAGVAAKNAALLAQRVRRVALPPLLAAEAPGGGARAYARFRARAAALARDPAAQALVYCA--LMATLGGSGXXXXXXXXXXXXXXXXXPLVVNEGAWLXXXXXXXXXXXAPPRALRAAASRLAQWPMAALVARGDVKAWQEMGEAEWRAAVGRRVAQASLKLEVAVMALVLLRVYPRAMTAPNKIASIASFALFASTFARYLRVRSAQLGGDTRVLGGGAALCGVPLAPLELLLDSAAYAAPLGLPRWAGAAFALFQAASP 447
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BLAST of mRNA_P-wetherbeei_contig1154.6.1 vs. uniprot
Match: A0A6H5KS72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS72_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 5.650e-22
Identity = 77/193 (39.90%), Postives = 103/193 (53.37%), Query Frame = 1 
Query:  598 RYGKFRDRVTLLAADPAVQSLVYCTIFLLLPLGRALAPLALREAVYLACAAAEILGLAAPRLHAVLAALLERPLAALLTGGNVKKLRAMDAPARRSLLGRRVAQLSLKLELALIGALLLRVYAPGVIGPS-------------------------RVTFAAKFVALGAVYVQLLAIKNAQLGDDIKLFRGLRV 1101
            RY K+R RV+ LA DPAVQ +VYC IF+L+PL  AL PL L+E+VYL     E L + AP L   L  L E  ++  +T G+ +K R   A  +R LLGRR+AQ   KLE+ +   + LRV  P V+  S                         RV    K + L   YV+LL +KN QL DD+++  GL+V
Sbjct:   16 RYVKYRARVSALALDPAVQGIVYCGIFMLMPLSLALIPLLLKESVYLLWVMKEALQITAPGLVETLTTLSEPLMSVFMTAGDSEKWRDTPAGEKRLLLGRRLAQACFKLEMVMPFGVALRVL-PAVLQASLGAGGSVADGEGAEGAAAGAGGQLGRVLPLVKVLVLVMAYVKLLVVKNGQLEDDVRILSGLKV 207
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1154.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSM7_ECTSI1.430e-6439.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YJH6_9STRA4.690e-5743.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CE38_9STRA1.160e-3834.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KS72_9PHAE5.650e-2239.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1154contigP-wetherbeei_contig1154:4156..6734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1673
Hectar predicted targeting categoryother localisation
Exons4
Cds size1134
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1154.6.1prot_P-wetherbeei_contig1154.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1154 4359..6142 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185916.147243-UTR-P-wetherbeei_contig1154:4155..43581683185916.147243-UTR-P-wetherbeei_contig1154:4155..4358Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1154 4156..4358 -
1683185916.1804543-UTR-P-wetherbeei_contig1154:6142..63231683185916.1804543-UTR-P-wetherbeei_contig1154:6142..6323Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1154 6143..6323 -
1683185916.1874864-UTR-P-wetherbeei_contig1154:6579..67341683185916.1874864-UTR-P-wetherbeei_contig1154:6579..6734Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1154 6580..6734 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185916.1549528-CDS-P-wetherbeei_contig1154:4358..45621683185916.1549528-CDS-P-wetherbeei_contig1154:4358..4562Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1154 4359..4562 -
1683185916.1623745-CDS-P-wetherbeei_contig1154:4877..55441683185916.1623745-CDS-P-wetherbeei_contig1154:4877..5544Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1154 4878..5544 -
1683185916.1728868-CDS-P-wetherbeei_contig1154:5879..61421683185916.1728868-CDS-P-wetherbeei_contig1154:5879..6142Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1154 5880..6142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1154.6.1

>prot_P-wetherbeei_contig1154.6.1 ID=prot_P-wetherbeei_contig1154.6.1|Name=mRNA_P-wetherbeei_contig1154.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=378bp
MADETLDDVLPVQQRVIKYLTDDRLFAAQLVCSIYYLANVLACALQPSGA
PRGCYEGALVAVMLKNMAAVFSRLQRILVPHLLYEPERYGKFRDRVTLLA
ADPAVQSLVYCTIFLLLPLGRALAPLALREAVYLACAAAEILGLAAPRLH
AVLAALLERPLAALLTGGNVKKLRAMDAPARRSLLGRRVAQLSLKLELAL
IGALLLRVYAPGVIGPSRVTFAAKFVALGAVYVQLLAIKNAQLGDDIKLF
RGLRVGGVPAGWLDSLLDSVLFSGMLGVPWWLGLLVPAMQAMDPRGPLVR
QLRDGGSPTKMLRERLFDLIVGRDRSKEDDEEEEAESDGSGGENAAAPDA
AGSELHDPTGVEGIFKVARVAVGLTND*
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mRNA from alignment at P-wetherbeei_contig1154:4156..6734-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1154.6.1 ID=mRNA_P-wetherbeei_contig1154.6.1|Name=mRNA_P-wetherbeei_contig1154.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2579bp|location=Sequence derived from alignment at P-wetherbeei_contig1154:4156..6734- (Phaeothamnion wetherbeei SAG_119_79)
GCGGAAAGCAGTGCGGCTCAGGCCAGTGTGCCCGGAAAGGCTCCGAGTGC
TCGGCCACGGGGCAGCAAGGGAGCAAAAAAAGTGGGAAGGAGAGGCGCTG
CTGCACATGAAAAGCCTGCCAAGACCGGCACGCCGCCAAGAGCCGACGTG
AAGGCGTAAGTCTTTTTATTAAAGTCGCGTACTTTTCGCCCGTGTCCGAA
TAGGCCTAGTCGAAGATGTTTTGGAGGCGTGGGCGATATCTTGAAGACAG
CATCGGCGGTTGCCAGACAAAACCAAGTCTCACGCTAAGGTCCAGGAAAA
CCAGTTTTTTTTTGTTTCCTTGTTTCTTGTTTCGATTTGCATCCCGCCAA
TTATGCCCGTTTTCCTCGATCTGATTTCGTGATTACTCCTTGCCGTTTTG
AACATCTGCAGGGAATGCGGCGCGTTAAAAGGCTCGATCGATTCTCCCTC
GCCGGATGTCAACGCCACAGCGGCGGACGAGGATGCGGCGGCTACAGCAG
GTGCAAGAGCAACAGCGACGTTGGCTTCTCCATTGGCCACACCATCCCTT
TTCGCCTTTCCGCCCACACAGCGCCGTCCCCGCGCGCGCCCAATGGCGGA
TGAGACATTGGATGACGTGCTCCCGGTACAGCAGCGGGTCATAAAGTATC
TGACGGACGACCGCCTCTTTGCAGCGCAGCTGGTGTGCTCCATCTACTAC
CTTGCCAACGTGCTGGCCTGTGCGCTGCAGCCCAGCGGCGCGCCGCGCGG
CTGCTACGAAGGAGCGCTGGTGGCCGTGATGCTGAAGAACATGGCGGCTG
TGTTTTCTCGGCTCCAGCGCATCCTGGTGCCACACTTGTTGTACGAGCCG
GAGCGGTGCGGTTCTGACTTTTCCTTACCTGTAGGCTCTTTTGAGAGAGT
GCCATTATTGCAACTTTTAATTTCTGTTGTCGATTCGGCGCTGGCACTGC
TAAGTACCTGTCCGGTCAGTTGCTATGTGAACGATTTTGACACCTTTCGG
TCTGCTGGCTTGCCTTCCCCGCATCTCTGTCGAACAATCTGTATGCGAAT
AGATAACGTAGCATCTCAGTTTCCAATTGAATGCAGCGGCAATAGCCTTT
ACGAAAGCTATTGACTATTGTTCTCACTTTGTGTTTCTTCGTCGTCCCCA
ACCTCGCTTCACCCTTCGGTTCCCACCCGCAAAAACACAGGTACGGCAAG
TTCAGGGACCGCGTGACGCTCCTCGCCGCCGACCCTGCCGTGCAGTCGCT
CGTCTACTGCACCATCTTCCTGCTGCTTCCGCTCGGCCGCGCACTGGCGC
CATTGGCGCTCCGCGAAGCCGTCTACCTCGCCTGCGCCGCCGCCGAGATC
CTCGGACTGGCGGCGCCGCGGCTCCACGCGGTTCTGGCTGCGCTCTTGGA
GCGGCCGCTAGCGGCGCTCCTGACGGGGGGCAACGTCAAGAAGCTGCGGG
CGATGGACGCACCAGCGCGGCGCAGCCTGCTGGGGCGACGGGTGGCACAG
CTCTCGCTCAAGCTGGAGTTGGCACTCATCGGCGCGCTGCTTCTGCGCGT
ATACGCACCTGGCGTCATCGGCCCCAGTCGGGTCACCTTCGCCGCAAAGT
TTGTGGCACTGGGAGCGGTCTACGTTCAGCTCTTGGCCATCAAGAACGCG
CAGCTGGGGGATGACATCAAGCTTTTCCGCGGGCTGCGGGTCGGCGGCGT
GCCGGCGGGGTGGCTGGATTCGCTGCTAGACAGCGTGCTGTTCAGCGGGA
TGCTGGGTGTGCCGTGGTGGCTCGGGCTGCTGGTGCCGGCGATGCAGGCC
ATGGACCCGCGGGGGCCACTCGTCCGCCAGCTGCGCGACGGGGGAAGCCC
CACAAAGGTGAGTACGGTTCGCAGCAAGCAGCTCGTTTGTCTCTGTGTTC
GTTGTGGTGGAGCGCTGCCGGAGCTTTGCGAGGCTGGAGAGGCGCTTCCT
CTAGTTTTCGTTGTGCCAGCACGATTTGCGAGCAAATTTCTTGTGGTAGA
GGAGAGCTGCCCGGCTTGTGGGATGCCTCTCCTGGTGACGGCTAGTGTTT
GTCCACAGGTTTGCCGGCGACTTCAGCGCTAAGCACTCACCCCTCGGAAT
GCAACTAATCACGCTCCTCCTATGTTGCGATGCCTGCTTCTCTTCCTCAA
CCCGCACTGATCGCCCCAACAGATGTTGCGAGAGCGGTTATTTGACCTTA
TTGTGGGCCGAGACCGCTCAAAGGAAGACGATGAAGAAGAGGAGGCGGAA
AGCGACGGCAGCGGCGGCGAGAACGCCGCTGCCCCCGACGCAGCCGGCTC
GGAACTGCACGACCCCACGGGAGTGGAAGGCATCTTTAAGGTAGCCAGGG
TGGCGGTTGGGCTAACAAACGATTGAGAGGTAGCTGTTGGCCCCTCTCTG
TGATTCTGCCGTTGACTTGTTGCCGATTTTGGTGGTCTGCGCGATTGGTG
AGGCGTCTAAAGGCGCAAAGTTTGTAAATGGCAGAAGTTGGAAGAACCGA
GATGCTACAAGCAAGTTGACACGCTGCCTTTTTTGTCTGCTATCTTGTTT
TTTCAAGTCACTTGGGGCTCTATGCCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1154:4156..6734-

>mRNA_P-wetherbeei_contig1154.6.1 ID=mRNA_P-wetherbeei_contig1154.6.1|Name=mRNA_P-wetherbeei_contig1154.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1134bp|location=Sequence derived from alignment at P-wetherbeei_contig1154:4156..6734- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGATGAGACATTGGATGACGTGCTCCCGGTACAGCAGCGGGTCAT
AAAGTATCTGACGGACGACCGCCTCTTTGCAGCGCAGCTGGTGTGCTCCA
TCTACTACCTTGCCAACGTGCTGGCCTGTGCGCTGCAGCCCAGCGGCGCG
CCGCGCGGCTGCTACGAAGGAGCGCTGGTGGCCGTGATGCTGAAGAACAT
GGCGGCTGTGTTTTCTCGGCTCCAGCGCATCCTGGTGCCACACTTGTTGT
ACGAGCCGGAGCGGTACGGCAAGTTCAGGGACCGCGTGACGCTCCTCGCC
GCCGACCCTGCCGTGCAGTCGCTCGTCTACTGCACCATCTTCCTGCTGCT
TCCGCTCGGCCGCGCACTGGCGCCATTGGCGCTCCGCGAAGCCGTCTACC
TCGCCTGCGCCGCCGCCGAGATCCTCGGACTGGCGGCGCCGCGGCTCCAC
GCGGTTCTGGCTGCGCTCTTGGAGCGGCCGCTAGCGGCGCTCCTGACGGG
GGGCAACGTCAAGAAGCTGCGGGCGATGGACGCACCAGCGCGGCGCAGCC
TGCTGGGGCGACGGGTGGCACAGCTCTCGCTCAAGCTGGAGTTGGCACTC
ATCGGCGCGCTGCTTCTGCGCGTATACGCACCTGGCGTCATCGGCCCCAG
TCGGGTCACCTTCGCCGCAAAGTTTGTGGCACTGGGAGCGGTCTACGTTC
AGCTCTTGGCCATCAAGAACGCGCAGCTGGGGGATGACATCAAGCTTTTC
CGCGGGCTGCGGGTCGGCGGCGTGCCGGCGGGGTGGCTGGATTCGCTGCT
AGACAGCGTGCTGTTCAGCGGGATGCTGGGTGTGCCGTGGTGGCTCGGGC
TGCTGGTGCCGGCGATGCAGGCCATGGACCCGCGGGGGCCACTCGTCCGC
CAGCTGCGCGACGGGGGAAGCCCCACAAAGATGTTGCGAGAGCGGTTATT
TGACCTTATTGTGGGCCGAGACCGCTCAAAGGAAGACGATGAAGAAGAGG
AGGCGGAAAGCGACGGCAGCGGCGGCGAGAACGCCGCTGCCCCCGACGCA
GCCGGCTCGGAACTGCACGACCCCACGGGAGTGGAAGGCATCTTTAAGGT
AGCCAGGGTGGCGGTTGGGCTAACAAACGATTGA
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