mRNA_P-wetherbeei_contig11536.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11536.2.1
Unique NamemRNA_P-wetherbeei_contig11536.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11536.2.1 vs. uniprot
Match: A0A524HQH7_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A524HQH7_9HYPH)

HSP 1 Score: 294 bits (752), Expect = 6.510e-92
Identity = 185/430 (43.02%), Postives = 250/430 (58.14%), Query Frame = 1
Query:    1 HALGYPDAPNVVSWLLSLMLVWLGWSLLRQRGVTHPIAYCLVAALLVGAYPVVFHVTGGSHAFGDLSLATAVVALALPARLLAVCGPARFAFMVSLLAWSAASAKVSLFPVAGAVVLLAAIFAWRGCEIRAERFRVVAAAALPWLLLGGPLMVWTHLQTGSPFGPLFAGVFGESLFRPEIFDAFAERSRGRNQSPFDAIPLDDLAAYSPLVWLGAIGALASRATPAPVRRWGSVLLLGQCLIVAWLLPYHVRFLGGLQYGLAICFALY-LPPWLALRRHA---AIALVLAGVLPWLLGQAIYAQQFATMALGLEDRTAFYRRYVSFFDDFAKLDRLLPANAVLLSGNIRPPAVYAPRPMVFDLADVPPGHEAYVFNVD-----TPKASDYPAGYVLGPEIYTNPNAVQTAFRRFWVAPQTGELHVVRIAR 1263
            HA+G+PDA NV SW L  ML W  W ++R   ++   +   V  L VG YPVV+HVTGG+HA GDL++A A+VA     RLLA   PA +A +VS+L  SAAS+KVSL PV   ++ L+A    R     + R RV+ +   PW++L  P+M+WT + +GSPFGP+ AGVFG S++         + +R  N+ P        L  YSPLVWLGA GA+     P        +L + QC+++  LLP+  RFLGG+ +GLAI FA + LP +   R HA   A+A  L  +LPW+  Q  YA QF  +ALG E R AFY RYV+ FDD+ +LD +L  ++VLL+ + R  +VYAPRP+ FD  DVPPG      ++      TP   D   G+ LG  IY NP AV T FR     P    L V+++ R
Sbjct:   38 HAIGFPDAANVESWALGAMLAWFAWRIIRANSLSAAWSAFWVCGLCVGIYPVVWHVTGGAHAMGDLAMAAAIVAFVERDRLLAATPPASYAALVSILLLSAASSKVSLVPVCVIMLCLSAGSVLRATPRNSAR-RVMLSFLTPWVVLYCPIMLWTWIHSGSPFGPMLAGVFGPSIYVESWIHQTFQLAREINRPPLYVTGYYALVGYSPLVWLGAAGAVFGAKVPHATCTVLGLLFVLQCILIYLLLPHDARFLGGIPFGLAIIFASHALPRFRNFRIHARNMAVACTLL-LLPWVAMQLYYATQFFPVALGFEKR-AFYERYVALFDDYIELDAILAKDSVLLT-DARLSSVYAPRPIFFDPLDVPPGKSVAFISLQPDGEGTPSPID---GFRLGEVIYANPRAVGTTFRTPGRNPDIRRLQVIQLHR 460          
BLAST of mRNA_P-wetherbeei_contig11536.2.1 vs. uniprot
Match: A0A6P1AEV1_9CYAN (Uncharacterized protein n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1AEV1_9CYAN)

HSP 1 Score: 246 bits (629), Expect = 5.080e-72
Identity = 155/438 (35.39%), Postives = 234/438 (53.42%), Query Frame = 1
Query:    1 HALGYPDAPNVVSWLLSLMLVWLGWSLLRQRGVTHPIAYCLVAALLVGAYPVVFHVTGGSHAFGDLSLATAVVALALPARLLAVCGPARFAFMVSLLAWSAASAKVSLFPVAGAVVLLAAIFAWRGCEIRAERFRVVAAAALPWLLLGGPLMVWTHLQTGSPFGPLFAGVFGESLFRPE----------IFDAFAERSRGRNQSPFDAIPLDDLAAYSPLVWLGAIGALASRATPAPVRRWGSVLLLGQCLIVAWLLPYHVRFLGGLQYGLAICFALYLPPWLA----LRRHAAIALVLAGVLPWLLGQAIYAQQFATMALGLEDRTAFYRRYVSFFDDFAKLDRLLPANAVLLSGNIRPPAVYAPRPMVFDLADVPPGHEAYVFNVDT-PKAS--DYPAGYVLGPEIYTNPNAVQTAFRRFWVAPQTGELHVVRIAR 1263
            HALG+PDA NVVSW LSL+LVW GW  + +R      AY  V  ++VG YP+V++VTGG+HA GDL+ A+A+VAL     LL       + F+ SLL  S+ S+KV+LFP+   ++ L+ ++ W        + +VV    LPW +   PL++WT  Q+GSPFGP+   +F ES+++            I  A   R R   +  F          YSPL+WL   G +         R     L + Q LI+   L +  R+LGG+QYG+ I F + +   +      +    I L+L  +LPWL  Q  YAQ F  ++LGLE+++ FY R ++F+ D+  LDR+LP +A LL   I+  +VY+PRP+  +  D+P     ++  V++  K S  +  + Y +G  +Y NP A+   +R        G+L V  + R
Sbjct:  180 HALGFPDAANVVSWSLSLILVWFGWYAIAERLKVSAFAYLCVTPIVVGIYPIVWYVTGGAHAMGDLATASAIVALFTREDLLKKVNYQTYGFICSLLVLSSVSSKVTLFPLGMTMLGLSIVYLWVNLPTWQTKIKVVMMILLPWFIFYLPLLIWTFFQSGSPFGPMLNELFNESIYQTYPTTKGDYLKGIKIAINNRLRNSLEHTF--------LGYSPLIWLMTWGIIFINKLKLAKRLSILSLFVFQILIIILFLTHETRYLGGIQYGIVILFGINISEKILKKVIYKYWLIINLIL--ILPWLSLQTYYAQNFVPVSLGLENKSEFYLRNIAFYQDYQILDRILPKDAALLIDGIKINSVYSPRPIYLNPVDLPAKKSLFLLRVNSRSKLSKRNILSDYQIGQRVYVNPQAIMQIYRVPGKNNPRGKLEVFALTR 607          
BLAST of mRNA_P-wetherbeei_contig11536.2.1 vs. uniprot
Match: UPI001142615F (hypothetical protein n=1 Tax=Thermodesulfovibrio sp. Kuro-1 TaxID=2580394 RepID=UPI001142615F)

HSP 1 Score: 90.5 bits (223), Expect = 7.660e-16
Identity = 100/432 (23.15%), Postives = 201/432 (46.53%), Query Frame = 1
Query:   10 GYPDAPNVVSWLLSLMLVWLGWSLLRQRG---VTHPIAYCLVAALLVGAYPVVFHVTGGSHAFGDLSLATAVVALALPARLLAVCGPAR-FAFMVSLLAWSAASAKVSLFPVAGAVVLLAAIFAWRGCEIRAERFRVVAAAALPWLLLGGPLMVWTHLQTGSPFGPLFAGVFGESLFRPEIFDAFAERSRGRN---QSPFDAIPLDDLAAYSPLVWLGAIGALASRATPAPVRRWGSVLLLGQCLIVAWLLPYHVRFLGGLQYGLAICFALYLPPWLAL----RRHAAIALVLAGVLPWLLGQAIYAQQFATMALGLEDRTAFYRRYVSFFDDFAKLDRLLPANAVLLSGNIRPPAVYAPRPMVFDLADVPPGHEA--YVFNV-DTPKASDYPAGYVLGPEIYTNPNAVQTAFRRFWVAPQTGELHVVRIAR 1263
            G+P+A N+ ++  S++L +L +  L+++    +     + L    L+G + +VFH T G HAF +  + + +  +    ++    G  + + F + +L+     +K+S  PV   +++   I       I++ R   +    +P+L+   P++V+T++++GSPFGP F   FG  ++  +    F      +       F       L  YS LV L  I  L +      +    S+L+L   + +   LP+ +RF GG  Y   I    Y+   L +    +      +V + +L +L    +Y+  F       +D+  +    +  ++++ K+D+L+ +++V+L    R    Y+PR +V+D  D+    E   Y+  V +T +  +    Y L  +IY N +A+ T++R  + +   G+L + R+ R
Sbjct:  184 GFPNASNLYAYFFSILLFYLFYEKLKEKTWGKIDKKYIFLLTLLTLIGMHHLVFHTTLGGHAFNEFCMFSLLCMILNREKI----GDEKVYYFYIGVLSTGVVGSKISYAPVIIVILIYFTI-----SIIKSGRLSSLVYMYIPFLIFLLPIIVFTYVKSGSPFGPFFIEFFGSKIYTIDEVKNFIFNYSIKLPYLNLEFSYFIKSILFDYSILVVLSLILFLFAGFKMNKIIWLLSILML---IAIYVKLPHDIRFWGGFLYCFVILNINYMTKNLNVLEIFKSKITYKIVKSYILFFLFVIFVYSLNFYNFYF-TDDKKKWMFENIGLYEEYLKIDKLVDSDSVILLLGTRGNGAYSPRLIVYDWKDLELHKEKTKYLLYVGNTGELENRFRDYNLI-KIYENNSAMITSYRTPFKSKDIGQLTLYRLER 601          
BLAST of mRNA_P-wetherbeei_contig11536.2.1 vs. uniprot
Match: A0A2E0GXZ1_9BACT (Uncharacterized protein n=1 Tax=Cytophagia bacterium TaxID=2026730 RepID=A0A2E0GXZ1_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 5.820e-14
Identity = 98/416 (23.56%), Postives = 179/416 (43.03%), Query Frame = 1
Query:    1 HALGYPDAPNVVSWLLSLMLVWLGWSLLRQRGVTHPIAYCLVAALLVGAYPVVFHVTGGSHAFGDLSLATAVVALALPARLLAVCGPARFAFMVSLLAWSAASAKVSLFPVAGAVVLLAAIFA---WRGCEIRAERFRVVAAAALPWLLLGGPLMVWTHLQTGSPFGPLFAGVFGESLFRPE--IFDAFAERSRGR--NQSPFDAIPLDDLAAYSPLVWLGAIGALASRATPAPVRRWGSVLLLGQCLIVAWLLPYHVRFLGGLQYGLAICFALYLPPWLALRRHAAI-ALVLAGVLPWLLGQAIYAQQFATMALGLEDRTAFYRRYVSFFDDFAKLDRLLPANAVLLSGNIRPPAVYAPRPMVFDLADVPPGH-EAYVFNVDTPKASDYPAGYVLG----PEIYTNPNAVQTAFR 1209
            ++LG PD+ N++S  + +  +   ++L+        +    +  +  G    V  +T  S++    S   A++ ++ P R L       F+     L  S   +K+S+ P++  + L         W   +I       +    +P ++   PL++++ L +GSPFG      F  S F  E  +FD F E SRG    +     I     + +SP++W   +  + S+      +     + + Q  I+ + LP   R   G QY   I   + + P+L L+    I ++ L   +PWL+    YA  F  +     D   F + Y+ F++D+ KLD+L+  +A LL    R  + ++PR +  ++ D+       Y+F V      DY +  + G     +IY N  + Q  FR
Sbjct:  181 YSLGIPDSLNILSLCIFISFLLTVYNLVFIDTKNSYLGLWCIILISSGLNVSVDIITNSSNSLLITSSTLALILISKPKRYLINTDLRTFSVFYGFLILSIVGSKISMVPISFVLFLFFIKIIHNLWSSEKITTG----IIYFFIPLIIFYTPLLIYSWLMSGSPFG-----TFLNSFFTCEKVLFDPFLEFSRGNLGYRGNIKEILFLMFSRWSPIIWFSWL-IIPSKRIELHQKIVLLTIFIVQFFIICFFLPNKPRHFSGFQYAALIVIFIEILPYLYLKAKKVIFSIFLVFSIPWLILDIYYA--FPLIKKAFLDTETFKQDYIFFYNDYKKLDKLIDEDAQLLIKGTRINSFHSPRKVFRNIIDIKDKSLPTYLFLV-----GDYDSNKIRGIKVKEKIYENKISKQYCFR 579          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11536.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A524HQH7_9HYPH6.510e-9243.02Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A6P1AEV1_9CYAN5.080e-7235.39Uncharacterized protein n=1 Tax=Kamptonema sp. SIO... [more]
UPI001142615F7.660e-1623.15hypothetical protein n=1 Tax=Thermodesulfovibrio s... [more]
A0A2E0GXZ1_9BACT5.820e-1423.56Uncharacterized protein n=1 Tax=Cytophagia bacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11536contigP-wetherbeei_contig11536:870..2138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1269
Hectar predicted targeting categorysignal peptide
Exons1
Cds size1269
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185915.9059389-CDS-P-wetherbeei_contig11536:869..21381683185915.9059389-CDS-P-wetherbeei_contig11536:869..2138Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11536 870..2138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11536.2.1prot_P-wetherbeei_contig11536.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11536 870..2138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11536.2.1

>prot_P-wetherbeei_contig11536.2.1 ID=prot_P-wetherbeei_contig11536.2.1|Name=mRNA_P-wetherbeei_contig11536.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=423bp
HALGYPDAPNVVSWLLSLMLVWLGWSLLRQRGVTHPIAYCLVAALLVGAY
PVVFHVTGGSHAFGDLSLATAVVALALPARLLAVCGPARFAFMVSLLAWS
AASAKVSLFPVAGAVVLLAAIFAWRGCEIRAERFRVVAAAALPWLLLGGP
LMVWTHLQTGSPFGPLFAGVFGESLFRPEIFDAFAERSRGRNQSPFDAIP
LDDLAAYSPLVWLGAIGALASRATPAPVRRWGSVLLLGQCLIVAWLLPYH
VRFLGGLQYGLAICFALYLPPWLALRRHAAIALVLAGVLPWLLGQAIYAQ
QFATMALGLEDRTAFYRRYVSFFDDFAKLDRLLPANAVLLSGNIRPPAVY
APRPMVFDLADVPPGHEAYVFNVDTPKASDYPAGYVLGPEIYTNPNAVQT
AFRRFWVAPQTGELHVVRIARP*
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mRNA from alignment at P-wetherbeei_contig11536:870..2138-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11536.2.1 ID=mRNA_P-wetherbeei_contig11536.2.1|Name=mRNA_P-wetherbeei_contig11536.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1269bp|location=Sequence derived from alignment at P-wetherbeei_contig11536:870..2138- (Phaeothamnion wetherbeei SAG_119_79)
CATGCGCTCGGCTATCCCGATGCCCCCAATGTCGTGAGCTGGCTGCTGAG CCTGATGCTGGTCTGGCTAGGCTGGTCCTTGCTGCGCCAGCGCGGCGTCA CCCATCCGATCGCCTATTGCCTGGTGGCGGCATTGCTGGTCGGCGCCTAT CCGGTCGTCTTCCATGTAACCGGCGGCAGTCACGCCTTCGGCGACCTGTC GCTGGCGACAGCCGTGGTTGCCCTAGCCCTGCCGGCCAGGCTTCTGGCCG TTTGCGGCCCCGCCCGATTTGCGTTCATGGTGTCACTGCTCGCGTGGAGC GCGGCCTCGGCAAAGGTGTCGCTCTTCCCCGTCGCGGGCGCCGTCGTACT GCTTGCCGCCATTTTCGCGTGGCGTGGGTGCGAAATCCGCGCCGAGCGGT TTCGTGTCGTTGCCGCTGCGGCACTGCCCTGGCTGCTCCTGGGGGGGCCA CTGATGGTGTGGACCCACCTTCAAACCGGCTCCCCGTTCGGTCCCCTGTT CGCCGGCGTTTTCGGCGAAAGCCTCTTTCGGCCGGAGATATTCGATGCTT TCGCCGAGCGTTCGCGAGGCCGCAACCAGTCTCCGTTCGACGCGATACCG CTCGACGACCTGGCCGCCTACTCGCCGCTTGTCTGGCTGGGCGCGATCGG CGCCCTCGCCTCCCGTGCGACGCCGGCGCCTGTGCGTCGATGGGGAAGCG TCCTGCTGCTCGGGCAATGCCTGATCGTGGCTTGGCTGCTGCCGTATCAT GTAAGATTCCTGGGCGGCCTTCAGTACGGCCTCGCCATCTGCTTCGCGCT CTACCTGCCCCCATGGCTCGCGCTCCGGCGGCACGCGGCGATCGCCCTGG TCTTGGCCGGCGTCCTGCCGTGGCTGCTTGGCCAGGCCATCTATGCCCAG CAATTCGCCACGATGGCCCTGGGCCTCGAGGACCGAACCGCCTTCTACCG CCGCTACGTCTCCTTCTTCGACGACTTCGCCAAGCTGGATCGCTTGTTGC CGGCGAACGCGGTCCTGCTGTCGGGGAATATCCGGCCGCCGGCAGTCTAT GCGCCCCGACCGATGGTCTTCGATCTGGCCGACGTGCCGCCCGGGCACGA GGCCTACGTCTTCAACGTCGACACGCCGAAAGCCTCCGACTATCCGGCCG GTTATGTGCTGGGTCCGGAAATCTACACCAACCCCAACGCCGTGCAGACA GCGTTCAGGCGCTTCTGGGTCGCTCCCCAAACCGGAGAACTCCATGTTGT CCGCATCGCGCGCCCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11536:870..2138-

>mRNA_P-wetherbeei_contig11536.2.1 ID=mRNA_P-wetherbeei_contig11536.2.1|Name=mRNA_P-wetherbeei_contig11536.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1269bp|location=Sequence derived from alignment at P-wetherbeei_contig11536:870..2138- (Phaeothamnion wetherbeei SAG_119_79)
CATGCGCTCGGCTATCCCGATGCCCCCAATGTCGTGAGCTGGCTGCTGAG
CCTGATGCTGGTCTGGCTAGGCTGGTCCTTGCTGCGCCAGCGCGGCGTCA
CCCATCCGATCGCCTATTGCCTGGTGGCGGCATTGCTGGTCGGCGCCTAT
CCGGTCGTCTTCCATGTAACCGGCGGCAGTCACGCCTTCGGCGACCTGTC
GCTGGCGACAGCCGTGGTTGCCCTAGCCCTGCCGGCCAGGCTTCTGGCCG
TTTGCGGCCCCGCCCGATTTGCGTTCATGGTGTCACTGCTCGCGTGGAGC
GCGGCCTCGGCAAAGGTGTCGCTCTTCCCCGTCGCGGGCGCCGTCGTACT
GCTTGCCGCCATTTTCGCGTGGCGTGGGTGCGAAATCCGCGCCGAGCGGT
TTCGTGTCGTTGCCGCTGCGGCACTGCCCTGGCTGCTCCTGGGGGGGCCA
CTGATGGTGTGGACCCACCTTCAAACCGGCTCCCCGTTCGGTCCCCTGTT
CGCCGGCGTTTTCGGCGAAAGCCTCTTTCGGCCGGAGATATTCGATGCTT
TCGCCGAGCGTTCGCGAGGCCGCAACCAGTCTCCGTTCGACGCGATACCG
CTCGACGACCTGGCCGCCTACTCGCCGCTTGTCTGGCTGGGCGCGATCGG
CGCCCTCGCCTCCCGTGCGACGCCGGCGCCTGTGCGTCGATGGGGAAGCG
TCCTGCTGCTCGGGCAATGCCTGATCGTGGCTTGGCTGCTGCCGTATCAT
GTAAGATTCCTGGGCGGCCTTCAGTACGGCCTCGCCATCTGCTTCGCGCT
CTACCTGCCCCCATGGCTCGCGCTCCGGCGGCACGCGGCGATCGCCCTGG
TCTTGGCCGGCGTCCTGCCGTGGCTGCTTGGCCAGGCCATCTATGCCCAG
CAATTCGCCACGATGGCCCTGGGCCTCGAGGACCGAACCGCCTTCTACCG
CCGCTACGTCTCCTTCTTCGACGACTTCGCCAAGCTGGATCGCTTGTTGC
CGGCGAACGCGGTCCTGCTGTCGGGGAATATCCGGCCGCCGGCAGTCTAT
GCGCCCCGACCGATGGTCTTCGATCTGGCCGACGTGCCGCCCGGGCACGA
GGCCTACGTCTTCAACGTCGACACGCCGAAAGCCTCCGACTATCCGGCCG
GTTATGTGCTGGGTCCGGAAATCTACACCAACCCCAACGCCGTGCAGACA
GCGTTCAGGCGCTTCTGGGTCGCTCCCCAAACCGGAGAACTCCATGTTGT
CCGCATCGCGCGCCCCTGA
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