mRNA_P-wetherbeei_contig1152.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1152.3.1
Unique NamemRNA_P-wetherbeei_contig1152.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1152.3.1 vs. uniprot
Match: A0A7S2SL29_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SL29_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.440e-15
Identity = 56/145 (38.62%), Postives = 68/145 (46.90%), Query Frame = 3 
Query:  105 SGNFLPDPAASSD---WVVAPFKAEADIIFSAYVGAAPTPRAAATXXXXXXXXXXXASLSGSGSNGAGGVFGGASLAADVAREPLSSSGLPRSALRRVWDLSDVDRDGRLDEWEFAVALYLCRQYQESGKLPRHLPENVIPPCKR 530
            S  FL DP  SS    W+V PFK E D  F                                  N  G V     L+    R+ L ++GLPR  LR VW+L+D+DRDG+LD  EFAVA++LCRQ Q    LP  LP  V+PP KR
Sbjct:  180 SNPFLDDPVPSSPQVAWLVQPFKPEFDAYF----------------------------------NSQGPVHN--KLSPAQVRDALMTTGLPRETLRSVWELADIDRDGKLDRDEFAVAMFLCRQAQAGSALPASLPVEVVPPGKR 288
[Close]
BLAST of mRNA_P-wetherbeei_contig1152.3.1 vs. uniprot
Match: A0A1S8WQM6_9TREM (Uncharacterized protein n=1 Tax=Opisthorchis viverrini TaxID=6198 RepID=A0A1S8WQM6_9TREM)

HSP 1 Score: 75.5 bits (184), Expect = 1.790e-13
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:  330 DVAREPLSSSGLPRSALRRVWDLSDVDRDGRLDEWEFAVALYLCRQYQESGKLPRHLPENVIPPCKRGASSP 545
            DV +  L +S LP S LR +W LSDVD+DGRLD  EFA+A YL +   E   LP  LP++++PP KR   +P
Sbjct:   36 DVVKPILVASQLPNSVLRTIWQLSDVDKDGRLDADEFALANYLIKLKVEGNDLPSALPDHLVPPSKRSEQAP 107
[Close]
BLAST of mRNA_P-wetherbeei_contig1152.3.1 vs. uniprot
Match: A0A5J4N3V8_9TREM (Uncharacterized protein (Fragment) n=1 Tax=Paragonimus westermani TaxID=34504 RepID=A0A5J4N3V8_9TREM)

HSP 1 Score: 72.4 bits (176), Expect = 1.250e-12
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 3 
Query:  321 LAADVAREPLSSSGLPRSALRRVWDLSDVDRDGRLDEWEFAVALYLCRQYQESGKLPRHLPENVIPPCKR 530
            L+ +  R  L +S LP S LRR+W LSDVDRDG LD  EFA+A YL +   +   LP  LP ++IPP KR
Sbjct:   12 LSGEAVRPHLVASHLPLSVLRRIWQLSDVDRDGHLDADEFALANYLVKLKVDGNDLPNPLPAHLIPPSKR 81
[Close]
BLAST of mRNA_P-wetherbeei_contig1152.3.1 vs. uniprot
Match: F0WLM3_9STRA (Uncharacterized protein AlNc14C147G7412 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLM3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.790e-12
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 3 
Query:  333 VAREPLSSSGLPRSALRRVWDLSDVDRDGRLDEWEFAVALYLCRQYQESGKLPRHLPENVIPPCKRGASS 542
            V   PL ++G P  AL+ +W+L+D+D+DG LD+ EFA+A+YLC + +E   +P  L  ++IPP KR AS+
Sbjct:  218 VCMAPLQATGCPPQALKTIWELADMDKDGYLDQEEFAIAMYLCNRAKEGDTMPTELSVSMIPPSKRSAST 287
[Close]
BLAST of mRNA_P-wetherbeei_contig1152.3.1 vs. uniprot
Match: A0A7S1CI35_9STRA (Hypothetical protein n=2 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI35_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.540e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  333 VAREPLSSSGLPRSALRRVWDLSDVDRDGRLDEWEFAVALYLCRQYQESGKLPRHLPENVIPPCKR 530
             A+ PL  SGL ++ LR +W+L+D+D+DG+LD+ EFAVA+YL       G LP  LP N+IPP KR
Sbjct:  582 AAKGPLLESGLAKAILRPLWELADIDKDGKLDQDEFAVAMYLVSMCTSGGSLPETLPNNMIPPSKR 647
[Close]
BLAST of mRNA_P-wetherbeei_contig1152.3.1 vs. uniprot
Match: A0A2R6PC46_9APHY (Uncharacterized protein n=2 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PC46_9APHY)

HSP 1 Score: 76.6 bits (187), Expect = 6.710e-12
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 3 
Query:  321 LAADVAREPLSSSGLPRSALRRVWDLSDVDRDGRLDEWEFAVALYLCRQYQESGKLPRHLPENVIPPCKRGASS 542
            L  + AR     SGLP+  +R++WDL+D++ DGRLD  EFA+ALY  +  Q+   LP++LP N++PP  R A S
Sbjct:  509 LDGETARSHFLHSGLPQDTIRQIWDLADINLDGRLDREEFAIALYFIQMKQDGQILPQNLPANLVPPTLRSARS 582
[Close]
BLAST of mRNA_P-wetherbeei_contig1152.3.1 vs. uniprot
Match: UPI000EAAFD30 (epidermal growth factor receptor substrate 15-like 1 n=1 Tax=Zonotrichia albicollis TaxID=44394 RepID=UPI000EAAFD30)

HSP 1 Score: 72.8 bits (177), Expect = 1.170e-11
Identity = 45/106 (42.45%), Postives = 58/106 (54.72%), Query Frame = 3 
Query:  321 LAADVAREPLSSSGLPRSALRRVWDLSDVDRDGRLDEWEFAVALYLCRQYQESGKLPRHLPENVIPPCKRGASSPSNPFV*NRPAQRWTKPTDCTSSRLPYG*STS 638
            L+ D  +  L +S LP   L RVWDLSD+D+DG LD+ EFAVA++L  +  E   +P  LP ++IPP KR  SS     V   PA     P D   S   +G  TS
Sbjct:   74 LSGDKVKPVLMNSKLPLDILGRVWDLSDIDKDGHLDKDEFAVAMHLVYRALEKESVPSQLPPSLIPPSKRKKSSVFPGAVPVLPAS--PPPKDSLRSTPSHGSGTS 177
[Close]
BLAST of mRNA_P-wetherbeei_contig1152.3.1 vs. uniprot
Match: A0A075AFT5_9TREM (Uncharacterized protein n=4 Tax=Opisthorchiidae TaxID=6196 RepID=A0A075AFT5_9TREM)

HSP 1 Score: 75.5 bits (184), Expect = 1.380e-11
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:  330 DVAREPLSSSGLPRSALRRVWDLSDVDRDGRLDEWEFAVALYLCRQYQESGKLPRHLPENVIPPCKRGASSP 545
            DV +  L +S LP S LR +W LSDVD+DGRLD  EFA+A YL +   E   LP  LP++++PP KR   +P
Sbjct:  480 DVVKPILVASQLPNSVLRTIWQLSDVDKDGRLDADEFALANYLIKLKVEGNDLPSALPDHLVPPSKRSEQAP 551
[Close]
BLAST of mRNA_P-wetherbeei_contig1152.3.1 vs. uniprot
Match: A0A7S4VYB4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VYB4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.570e-11
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  336 AREPLSSSGLPRSALRRVWDLSDVDRDGRLDEWEFAVALYLCRQYQESGK-LPRHLPENVIPPCKR 530
            AR+ L  +GL +S LR++W+LSD+DRDG  D  E+ VA++LC    + G+ +P  LP +VIPP KR
Sbjct:   76 ARDVLVQTGLDKSQLRQIWNLSDIDRDGHFDHHEYVVAMFLCDAVIQKGRPIPTELPASVIPPSKR 141
[Close]
BLAST of mRNA_P-wetherbeei_contig1152.3.1 vs. uniprot
Match: UPI00138FE48F (LOW QUALITY PROTEIN: epidermal growth factor receptor substrate 15-like 1 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FE48F)

HSP 1 Score: 75.5 bits (184), Expect = 1.620e-11
Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 3 
Query:  321 LAADVAREPLSSSGLPRSALRRVWDLSDVDRDGRLDEWEFAVALYLCRQYQESGKLPRHLPENVIPPCKR-----GASSPSNPFV*NRP 572
            L  D  +  L +S LP   L RVWDLSD+DRDG LD  EFAVA++L  +  E   +P  LP  ++PP KR     G+S P++P V N P
Sbjct:  146 LPGDKVKPVLLNSKLPIDVLGRVWDLSDIDRDGMLDADEFAVAMHLVYRALEGDMVPLTLPGRMVPPSKRKLKHPGSSGPASPLVSNMP 234
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1152.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2SL29_9STRA2.440e-1538.62Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1S8WQM6_9TREM1.790e-1350.00Uncharacterized protein n=1 Tax=Opisthorchis viver... [more]
A0A5J4N3V8_9TREM1.250e-1251.43Uncharacterized protein (Fragment) n=1 Tax=Paragon... [more]
F0WLM3_9STRA1.790e-1245.71Uncharacterized protein AlNc14C147G7412 n=1 Tax=Al... [more]
A0A7S1CI35_9STRA4.540e-1251.52Hypothetical protein n=2 Tax=Bicosoecida sp. CB-20... [more]
A0A2R6PC46_9APHY6.710e-1245.95Uncharacterized protein n=2 Tax=Hermanssonia centr... [more]
UPI000EAAFD301.170e-1142.45epidermal growth factor receptor substrate 15-like... [more]
A0A075AFT5_9TREM1.380e-1150.00Uncharacterized protein n=4 Tax=Opisthorchiidae Ta... [more]
A0A7S4VYB4_9STRA1.570e-1148.48Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
UPI00138FE48F1.620e-1146.07LOW QUALITY PROTEIN: epidermal growth factor recep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1152contigP-wetherbeei_contig1152:4807..6455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size898
Hectar predicted targeting categoryother localisation
Exons3
Cds size756
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185915.2177403-UTR-P-wetherbeei_contig1152:4806..48491683185915.2177403-UTR-P-wetherbeei_contig1152:4806..4849Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1152 4807..4849 -
1683185915.2535355-UTR-P-wetherbeei_contig1152:6356..64551683185915.2535355-UTR-P-wetherbeei_contig1152:6356..6455Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1152 6357..6455 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185915.2271955-CDS-P-wetherbeei_contig1152:4849..52311683185915.2271955-CDS-P-wetherbeei_contig1152:4849..5231Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1152 4850..5231 -
1683185915.2376497-CDS-P-wetherbeei_contig1152:5464..54861683185915.2376497-CDS-P-wetherbeei_contig1152:5464..5486Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1152 5465..5486 -
1683185915.2454464-CDS-P-wetherbeei_contig1152:6004..63561683185915.2454464-CDS-P-wetherbeei_contig1152:6004..6356Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1152 6005..6356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1152.3.1prot_P-wetherbeei_contig1152.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1152 4850..6356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1152.3.1

>prot_P-wetherbeei_contig1152.3.1 ID=prot_P-wetherbeei_contig1152.3.1|Name=mRNA_P-wetherbeei_contig1152.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=252bp
MPAATSCPIPRPQATGSSRPSRPRPTSSSRPTSAPLPLPVRRPRLPPPPR
QKPRMPAFRAAVATVPAACLAERRWQPTWRESRSPARVFPAALCAACGTF
RTSTGTGGWTNGSSPSRCTCAANTRNRESCRGTCRRTLSRLASAVPRPLL
TRSYETDRPNDGPNRRTVRHLVCHTDDQPVRPDGRSAVGAAGRPPAPGKA
LGRTVAAEALAPVAVAVTSQAGFGWWRRDEFVVCLGRAVLLTHVLLCRSC
R*
back to top

mRNA from alignment at P-wetherbeei_contig1152:4807..6455-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1152.3.1 ID=mRNA_P-wetherbeei_contig1152.3.1|Name=mRNA_P-wetherbeei_contig1152.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1649bp|location=Sequence derived from alignment at P-wetherbeei_contig1152:4807..6455- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCGGCGACAGCAGCAGCCATAGCGCCGAGGCGCTTCCAACTGCA
ATCGCGGTGGCGTCCCCCGCCATCATTTGCCCGATCATGCCGCGATCGGA
TGCCAGCGGCAACTTCCTGCCCGATCCCGCGGCCTCAAGCGACTGGGTCG
TCGCGCCCTTCAAGGCCGAGGCCGACATCATCTTCTCGGCCTACGTCGGC
GCCGCTCCCACTCCCCGTGCGGCGGCCACGACTGCCGCCGCCGCCGCGGC
AGAAACCGCGGATGCCAGCCTTTCGGGCAGCGGTAGCAACGGTGCCGGCG
GCGTGTTTGGCGGAGCGTCGCTGGCAGCCGACGTGGCGCGAGAGCCGCTC
TCCAGCTCGGGTCTTCCCCGCAGCGCTCTGCGCCGCGTGTGGGACCTTTC
GGACGTCGACCGGGACGGGAGGCTGGACGAATGGGAGTTCGCCGTCGCGC
TGTAAGTTGCATTTTTGTACCTTCGCTCTTGCTGTTTGTTGACAGGCTGC
GGCGGCGGCAAGTGAAAACACGGTGTTCTGTTGGTTCCTTTGGCATGTTC
GAGCTGCGCTGCAGCCATAGGGTTTGGAGGCACTGCTGCGATGGGAGGAA
GCGGCGAATGGTGACCCCGTTTGGCGCGTTGTCTCTGCATTTTTTGGTTG
ACCCCGTTTGGCGCGTTGTCTCTGCATTTTTTGGTTCCAAGTCTTCTGTT
CCGCATTTTTTGAAGGTGTGATGCGTTTGCGGTATCGTTTTCACTCTTCG
ATCCCACCACTTTGGCTTCTTTCGCCGTGGCTGATCTGTGCAGCACTTCT
TCCTAGTATTGCCCGGCTCCTTTGTTTCTCGACTGTCATCATGATGGGTT
TCCATCTCTTGAACTTTTTGTCATATCTTCTGCTTTCCTTTTTCTTGATT
TCCTTCCTGCTGTTGCTTCCTGTCTTTTCCCTTTCCTCGTCCTCTTCTCC
GCCCCCCTTCCTCCTGTAGGTACCTGTGCCGCCAATACCAGGTGAGGGAA
GGGCAGGACTGAAAACAAATAGGGGGATCTTTGCAAGATTGTAGATTCAA
TTCCCATACGCATTCCACAGCCGCAATCTTATCTCTGTAAGATTTTAGCC
TCTATTTTAATAGATGATTTCAGCACTTTCATCCTAGTTTTTTACAAGCT
GCCAGCGTCCATTCCGATTTTTGTGTCTGAGCTTCCGTCTTTCCCTTTTG
GCTTTCATTTTTTGCACTGCGCAGGAATCGGGAAAGCTGCCGCGGCACCT
GCCGGAGAACGTTATCCCGCCTTGCAAGCGCGGTGCCTCGTCCCCTTCTA
ACCCGTTCGTATGAAACCGACCGGCCCAACGATGGACCAAACCGACGGAC
TGTACGTCATCTCGTTTGCCATACGGATGATCAACCAGTCAGACCCGACG
GAAGAAGCGCTGTTGGGGCGGCAGGTAGACCTCCCGCCCCTGGCAAAGCA
TTAGGCCGGACGGTTGCAGCGGAGGCACTGGCGCCGGTGGCGGTGGCGGT
GACATCGCAGGCCGGGTTTGGTTGGTGGCGAAGAGACGAATTCGTGGTTT
GCCTTGGAAGGGCTGTGCTACTGACACACGTGCTTCTATGTAGAAGTTGC
CGTTGAGAGTGTGCATGGGAAAAGCGGGTGCAGTTATCGGAGATGATCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1152:4807..6455-

>mRNA_P-wetherbeei_contig1152.3.1 ID=mRNA_P-wetherbeei_contig1152.3.1|Name=mRNA_P-wetherbeei_contig1152.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=756bp|location=Sequence derived from alignment at P-wetherbeei_contig1152:4807..6455- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAGCGGCAACTTCCTGCCCGATCCCGCGGCCTCAAGCGACTGGGTC
GTCGCGCCCTTCAAGGCCGAGGCCGACATCATCTTCTCGGCCTACGTCGG
CGCCGCTCCCACTCCCCGTGCGGCGGCCACGACTGCCGCCGCCGCCGCGG
CAGAAACCGCGGATGCCAGCCTTTCGGGCAGCGGTAGCAACGGTGCCGGC
GGCGTGTTTGGCGGAGCGTCGCTGGCAGCCGACGTGGCGCGAGAGCCGCT
CTCCAGCTCGGGTCTTCCCCGCAGCGCTCTGCGCCGCGTGTGGGACCTTT
CGGACGTCGACCGGGACGGGAGGCTGGACGAATGGGAGTTCGCCGTCGCG
CTGTACCTGTGCCGCCAATACCAGGAATCGGGAAAGCTGCCGCGGCACCT
GCCGGAGAACGTTATCCCGCCTTGCAAGCGCGGTGCCTCGTCCCCTTCTA
ACCCGTTCGTATGAAACCGACCGGCCCAACGATGGACCAAACCGACGGAC
TGTACGTCATCTCGTTTGCCATACGGATGATCAACCAGTCAGACCCGACG
GAAGAAGCGCTGTTGGGGCGGCAGGTAGACCTCCCGCCCCTGGCAAAGCA
TTAGGCCGGACGGTTGCAGCGGAGGCACTGGCGCCGGTGGCGGTGGCGGT
GACATCGCAGGCCGGGTTTGGTTGGTGGCGAAGAGACGAATTCGTGGTTT
GCCTTGGAAGGGCTGTGCTACTGACACACGTGCTTCTATGTAGAAGTTGC
CGTTGA
back to top