mRNA_P-wetherbeei_contig11518.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11518.7.1
Unique NamemRNA_P-wetherbeei_contig11518.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11518.7.1 vs. uniprot
Match: A0A0P6G9A6_9CRUS (Uncharacterized protein (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P6G9A6_9CRUS)

HSP 1 Score: 161 bits (408), Expect = 2.930e-49
Identity = 75/84 (89.29%), Postives = 77/84 (91.67%), Query Frame = 1
Query:    1 HTSRPTNINVVPIDYPLRARLRGRLTLLRLALSRNPWNFGDSASHTVNRYSCLHSHFRYLHGRLPFRFNGLRNAPLPRDHKITP 252
            HTSRPTNINVVPIDYPLRARLRGRLTLLRLALSRNPWNFGDSASHTVNRYSCLHSHFRYLH  LP RFNGLRNAPLP   ++ P
Sbjct:   29 HTSRPTNINVVPIDYPLRARLRGRLTLLRLALSRNPWNFGDSASHTVNRYSCLHSHFRYLHDPLPDRFNGLRNAPLPLSQRLNP 112          
BLAST of mRNA_P-wetherbeei_contig11518.7.1 vs. uniprot
Match: A0A7S3ICQ2_9CILI (Hypothetical protein (Fragment) n=1 Tax=Anophryoides haemophila TaxID=46462 RepID=A0A7S3ICQ2_9CILI)

HSP 1 Score: 144 bits (364), Expect = 1.080e-42
Identity = 67/78 (85.90%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    1 HTSRPTNINVVPIDYPLRARLRGRLTLLRLALSRNPWNFGDSASHTVNRYSCLHSHFRYLHGRLPFRFNGLRNAPLPR 234
            HT+RPTNINVVPIDYPLRARLRGRLTLLRLALSRNPW+FG+ ASH + RYSCLHSHFRYLH  LP RF GLRNAPLPR
Sbjct:   44 HTTRPTNINVVPIDYPLRARLRGRLTLLRLALSRNPWSFGERASHPLYRYSCLHSHFRYLHDPLPDRFTGLRNAPLPR 121          
BLAST of mRNA_P-wetherbeei_contig11518.7.1 vs. uniprot
Match: A0A7R9S1H0_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Argulus foliaceus TaxID=509924 RepID=A0A7R9S1H0_9CRUS)

HSP 1 Score: 136 bits (343), Expect = 4.940e-40
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 1
Query:    1 HTSRPTNINVVPIDYPLRARLRGRLTLLRLALSRNPWNFGDSASHTVNRYSCLHSHFRYLHGRLPFRFNGLRNAPLPR 234
            HT+RPTNINVVPIDYPLRARLRGRLTL  LAL RNPW+FG+ ASH + RYSCLHSHFRYLH  LP RF G+RNAPLPR
Sbjct:    3 HTTRPTNINVVPIDYPLRARLRGRLTLRGLALRRNPWSFGERASHPLYRYSCLHSHFRYLHDPLPDRFTGVRNAPLPR 80          
BLAST of mRNA_P-wetherbeei_contig11518.7.1 vs. uniprot
Match: A0A166H1M7_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium 5H7 TaxID=1701327 RepID=A0A166H1M7_9BACT)

HSP 1 Score: 131 bits (330), Expect = 7.160e-38
Identity = 62/85 (72.94%), Postives = 68/85 (80.00%), Query Frame = 1
Query:   28 VVPIDYPLRARLRGRLTLLRLALSRNPWNFGDSASHTVNRYSCLHSHFRYLHGRLPFRFNGLRNAPLPRDHKITP*ASVHHFSPV 282
            +VPIDYPLRARLRGRLTLLRLALSRNPW+FGDSASHTV RYSC HSHFRYLHG LP RF  LRNAPLP   ++ P       +P+
Sbjct:    1 MVPIDYPLRARLRGRLTLLRLALSRNPWSFGDSASHTVYRYSCQHSHFRYLHGPLPDRFISLRNAPLPLSQRLNPKLRCITLAPI 85          
BLAST of mRNA_P-wetherbeei_contig11518.7.1 vs. uniprot
Match: A0A7S3IBP1_9CILI (Hypothetical protein (Fragment) n=2 Tax=Anophryoides haemophila TaxID=46462 RepID=A0A7S3IBP1_9CILI)

HSP 1 Score: 118 bits (295), Expect = 2.520e-32
Identity = 55/60 (91.67%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 HTSRPTNINVVPIDYPLRARLRGRLTLLRLALSRNPWNFGDSASHTVNRYSCLHSHFRYL 180
            HTSRPTNINVVPIDYPLRARLRGRLTLLRLALSRNPW+FGD ASH V RYSC HSHFRYL
Sbjct:   54 HTSRPTNINVVPIDYPLRARLRGRLTLLRLALSRNPWDFGDRASHPVYRYSCQHSHFRYL 113          
BLAST of mRNA_P-wetherbeei_contig11518.7.1 vs. uniprot
Match: E0XS38_9PROT (Uncharacterized protein (Fragment) n=1 Tax=uncultured alpha proteobacterium HF0070_14E07 TaxID=710804 RepID=E0XS38_9PROT)

HSP 1 Score: 114 bits (284), Expect = 2.530e-30
Identity = 63/104 (60.58%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    4 TSRPTNINVVPIDYPLRARLRGRLTLLRLALSRNPWNFGDSASHTVNRYSCLHSHFRYLHGRLPFRFNGLRNAPLPRDHKITP*ASVHHFSPVTSSPQDLLFRP 315
            T+R  NIN++PIDY  R RLRGRLTL  L L RNPW +G+S SHT+ RYSC HSHFRYL       F GLRNAPLP   K T  ASV+  SP TSS Q  L RP
Sbjct:    9 TTRLRNINLIPIDYGFRPRLRGRLTLGGLTLPRNPWAYGESVSHTLCRYSCQHSHFRYLQHPSQDTFTGLRNAPLPCV-KDTSSASVYGLSPDTSSAQAGLSRP 111          
BLAST of mRNA_P-wetherbeei_contig11518.7.1 vs. uniprot
Match: Q3BKI0_9PROT (Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKI0_9PROT)

HSP 1 Score: 99.4 bits (246), Expect = 1.960e-24
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 1
Query:    4 TSRPTNINVVPIDYPLRARLRGRLTLLRLALSRNPWNFGDSASHTVNRYSCLHSHFRYL 180
            +SRPTNINVVPIDY  R RLRGRLTL  LAL RNPW FG+S SHT+ RYSC HSHFRYL
Sbjct:   87 SSRPTNINVVPIDYAFRPRLRGRLTLRGLALRRNPWTFGESVSHTLCRYSCQHSHFRYL 145          
BLAST of mRNA_P-wetherbeei_contig11518.7.1 vs. uniprot
Match: A0A6A5KV19_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KV19_LUPAL)

HSP 1 Score: 95.1 bits (235), Expect = 6.140e-21
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   13 PTNINVVPIDYPLRARLRGRLTLLRLALSRNPWNFGDSASHTVNRYSCLHSHFRYL 180
            PTNINVVPIDY    RLRGRLTLLRL LSRNPW+FG+  SH + RYSC HSHFRYL
Sbjct:  247 PTNINVVPIDYACPPRLRGRLTLLRLTLSRNPWSFGEGVSHPLYRYSCQHSHFRYL 302          
BLAST of mRNA_P-wetherbeei_contig11518.7.1 vs. uniprot
Match: A0A6A5L5E7_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L5E7_LUPAL)

HSP 1 Score: 89.7 bits (221), Expect = 9.960e-19
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   13 PTNINVVPIDYPLRARLRGRLTLLRLALSRNPWNFGDSASHTVNRYSCLHSHFRYLHG 186
            P NI  VPIDY  R RLRGRLTL RL L RNPW FG+S  HT+ RYSC HSHF YLHG
Sbjct:  372 PGNIRPVPIDYAFRPRLRGRLTLRRLTLRRNPWTFGESVFHTLCRYSCQHSHFPYLHG 429          
BLAST of mRNA_P-wetherbeei_contig11518.7.1 vs. uniprot
Match: A0A6A5L269_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L269_LUPAL)

HSP 1 Score: 89.7 bits (221), Expect = 1.020e-18
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   13 PTNINVVPIDYPLRARLRGRLTLLRLALSRNPWNFGDSASHTVNRYSCLHSHFRYLHG 186
            P NI  VPIDY  R RLRGRLTL RL L RNPW FG+S  HT+ RYSC HSHF YLHG
Sbjct:  423 PGNIRPVPIDYAFRPRLRGRLTLRRLTLRRNPWTFGESVFHTLCRYSCQHSHFPYLHG 480          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11518.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A0P6G9A6_9CRUS2.930e-4989.29Uncharacterized protein (Fragment) n=1 Tax=Daphnia... [more]
A0A7S3ICQ2_9CILI1.080e-4285.90Hypothetical protein (Fragment) n=1 Tax=Anophryoid... [more]
A0A7R9S1H0_9CRUS4.940e-4080.77Hypothetical protein (Fragment) n=1 Tax=Argulus fo... [more]
A0A166H1M7_9BACT7.160e-3872.94Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
A0A7S3IBP1_9CILI2.520e-3291.67Hypothetical protein (Fragment) n=2 Tax=Anophryoid... [more]
E0XS38_9PROT2.530e-3060.58Uncharacterized protein (Fragment) n=1 Tax=uncultu... [more]
Q3BKI0_9PROT1.960e-2477.97Uncharacterized protein n=1 Tax=Magnetospirillum g... [more]
A0A6A5KV19_LUPAL6.140e-2176.79Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L5E7_LUPAL9.960e-1970.69Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L269_LUPAL1.020e-1870.69Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11518contigP-wetherbeei_contig11518:1825..2140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1150469.RSPPHO_03259
Model size316
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.63e-19
EggNOG OGs2DTV2@1|root,33MS7@2|Bacteria,1NKAB@1224|Proteobacteria
Cds size255
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185915.0982063-UTR-P-wetherbeei_contig11518:1824..18851683185915.0982063-UTR-P-wetherbeei_contig11518:1824..1885Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11518 1825..1885 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185915.1109507-CDS-P-wetherbeei_contig11518:1885..21401683185915.1109507-CDS-P-wetherbeei_contig11518:1885..2140Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11518 1886..2140 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11518.7.1prot_P-wetherbeei_contig11518.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11518 1886..2140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11518.7.1

>prot_P-wetherbeei_contig11518.7.1 ID=prot_P-wetherbeei_contig11518.7.1|Name=mRNA_P-wetherbeei_contig11518.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
HTSRPTNINVVPIDYPLRARLRGRLTLLRLALSRNPWNFGDSASHTVNRY
SCLHSHFRYLHGRLPFRFNGLRNAPLPRDHKITP*
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mRNA from alignment at P-wetherbeei_contig11518:1825..2140-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11518.7.1 ID=mRNA_P-wetherbeei_contig11518.7.1|Name=mRNA_P-wetherbeei_contig11518.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=316bp|location=Sequence derived from alignment at P-wetherbeei_contig11518:1825..2140- (Phaeothamnion wetherbeei SAG_119_79)
CACACCTCCAGGCCCACGAATATTAACGTGGTTCCCATCGACTACCCCCT TCGGGCTCGTCTTAGGGGCCGGCTTACCCTGCTCAGATTAGCTTTAAGCA GGAACCCTTGGAATTTCGGCGACAGTGCATCTCACACTGTTAATCGCTAC TCATGTCTGCATTCGCACTTCCGATACCTCCACGGTCGGTTACCCTTCCG CTTCAACGGCCTACGGAACGCTCCGCTACCGCGTGATCATAAGATCACAC CCTAAGCTTCGGTGCATCACTTTAGCCCCGTTACATCTTCGCCGCAGGAT CTCTTATTTAGACCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11518:1825..2140-

>mRNA_P-wetherbeei_contig11518.7.1 ID=mRNA_P-wetherbeei_contig11518.7.1|Name=mRNA_P-wetherbeei_contig11518.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig11518:1825..2140- (Phaeothamnion wetherbeei SAG_119_79)
CACACCTCCAGGCCCACGAATATTAACGTGGTTCCCATCGACTACCCCCT
TCGGGCTCGTCTTAGGGGCCGGCTTACCCTGCTCAGATTAGCTTTAAGCA
GGAACCCTTGGAATTTCGGCGACAGTGCATCTCACACTGTTAATCGCTAC
TCATGTCTGCATTCGCACTTCCGATACCTCCACGGTCGGTTACCCTTCCG
CTTCAACGGCCTACGGAACGCTCCGCTACCGCGTGATCATAAGATCACAC
CCTAA
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