mRNA_P-wetherbeei_contig11489.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11489.1.1
Unique NamemRNA_P-wetherbeei_contig11489.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11489.1.1 vs. uniprot
Match: A0A0D2M9N9_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M9N9_9CHLO)

HSP 1 Score: 130 bits (327), Expect = 2.310e-36
Identity = 65/127 (51.18%), Postives = 84/127 (66.14%), Query Frame = 1
Query:   16 IFHLVEKSVWQNAK---NDYTPATYKQDGFIHATAEPGLLLPVANHFYAEVPGAFLCLAIDSLRIGAEVRYESATPVGDKPAMTGDQLTAAAEQLFPHIYGPLPREAVMAELAVTRSEDGTFLAIEG 387
            ++HLV++ +W++ K    DY P T++ DGFIH T E  LLLPVANHFY  V GAFL L +DS R+ ++V +E A PVG  PA         A+QLFPH+YG +   AV+ EL V R+ DG FLAIEG
Sbjct:   11 LYHLVQQELWESVKAEHKDYYPPTFESDGFIHLTKEANLLLPVANHFYTGVQGAFLVLELDSTRLTSKVVFEPAAPVGSTPAKESQ-----AQQLFPHLYGTIDAAAVVRELPVVRAADGAFLAIEG 132          
BLAST of mRNA_P-wetherbeei_contig11489.1.1 vs. uniprot
Match: A0A7J7QIK8_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QIK8_9CHLO)

HSP 1 Score: 128 bits (321), Expect = 1.880e-35
Identity = 67/133 (50.38%), Postives = 89/133 (66.92%), Query Frame = 1
Query:   13 TIFHLVEKSVWQNAKND---YTPATYKQDGFIHATAEPGLLLPVANHFYAEVPGAFLCLAIDSLRIGA-EVRYESATPVGDKPAMTGDQLTAAAEQLFPHIYGPLPREAVMAELAVTRSEDGTFLAIEGAEAR 399
            T++HLV++ +WQ  K+    Y P TY+ DGFIH T E  LLL VANHFY +VPG FL LAIDS ++ + +V +E+A PVGD+  + G       +QLFPH++G +   AV AEL V R+ DGTFLAI G  A+
Sbjct:   12 TLYHLVQQDIWQQCKDSAHAYFPPTYEADGFIHLTKEAQLLLGVANHFYTQVPGTFLVLAIDSAKLSSKQVVFEAAAPVGDQRPLEG-------QQLFPHLFGTIDFAAVCAELPVERAADGTFLAIPGLPAQ 137          
BLAST of mRNA_P-wetherbeei_contig11489.1.1 vs. uniprot
Match: A0A2E3QMP5_9GAMM (DUF952 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E3QMP5_9GAMM)

HSP 1 Score: 117 bits (294), Expect = 3.290e-31
Identity = 63/130 (48.46%), Postives = 80/130 (61.54%), Query Frame = 1
Query:   16 IFHLVEKSVWQNAKND---YTPATYKQDGFIHATAEPGLLLPVANHFYAEVPGAFLCL--AIDSL-RIGAEVRYESATPVGDKPAMTGDQLTAAAEQLFPHIYGPLPREAVMAELAVTRSEDGTFLAIEG 387
            +FHLV+ S+W+ +K     Y P TYKQDGF H T+ P  LL VANHFY EV G + CL   ++SL  +G EV +E   PVGDK          A ++LFPHI G +PREAV+    V RS+ G FL+I G
Sbjct:   20 VFHLVQMSLWEESKETGTVYYPPTYKQDGFTHGTSNPKKLLDVANHFYQEVEGEWRCLEMTVESLGEVGVEVIFEGTAPVGDK----APDFEGADDELFPHILGGIPREAVIKSYPVIRSKSGEFLSIPG 145          
BLAST of mRNA_P-wetherbeei_contig11489.1.1 vs. uniprot
Match: A0A2D6V7Y3_9GAMM (DUF952 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D6V7Y3_9GAMM)

HSP 1 Score: 117 bits (293), Expect = 1.050e-30
Identity = 64/131 (48.85%), Postives = 81/131 (61.83%), Query Frame = 1
Query:   16 IFHLVEKSVWQNAKND----YTPATYKQDGFIHATAEPGLLLPVANHFYAEVPGAFLCL--AIDSLRIGAEVR-YESATPVGDKPAMTGDQLTAAAEQLFPHIYGPLPREAVMAELAVTRSEDGTFLAIEG 387
            +FHLV+K++W+ A +     Y P TYKQDGF H TA P  LL VANHFY +VPG +LCL   +DSL+I   V  +E   PVGDKPA          ++L+PHI G +   AV+    V R+EDG F AIEG
Sbjct:   37 VFHLVQKNLWEEASSSEDQVYYPPTYKQDGFTHGTANPEKLLTVANHFYKDVPGDWLCLRMTVDSLKISGVVTVFEGTAPVGDKPA----DFDGNDDELYPHILGGISPMAVIDTHKVFRAEDGVFTAIEG 163          
BLAST of mRNA_P-wetherbeei_contig11489.1.1 vs. uniprot
Match: A0A3D1EN72_9GAMM (DUF952 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D1EN72_9GAMM)

HSP 1 Score: 115 bits (289), Expect = 3.210e-30
Identity = 66/131 (50.38%), Postives = 79/131 (60.31%), Query Frame = 1
Query:   16 IFHLVEKSVWQNAKND---YTPATYKQDGFIHATAEPGLLLPVANHFYAEVPGAFLCL--AIDSLR-IGAEVRYESATPVGDK-PAMTGDQLTAAAEQLFPHIYGPLPREAVMAELAVTRSEDGTFLAIEG 387
            IFHL++   W  AK D   Y P TY  DGF H TA P  LL VANHFY +V G + CL   ++SL+  G E R+E   PVGDK P   G Q     ++LFPHI G +   AV+ E  V RSEDGTFL+IEG
Sbjct:   39 IFHLIQAEYWDAAKADNSVYFPPTYDADGFTHGTANPEKLLVVANHFYKDVKGEWYCLRMTLESLQGTGVETRFEGTAPVGDKQPDFEGSQ-----DELFPHILGGIAPRAVLVEHPVIRSEDGTFLSIEG 164          
BLAST of mRNA_P-wetherbeei_contig11489.1.1 vs. uniprot
Match: A0A482SF44_9ARCH (DUF952 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SF44_9ARCH)

HSP 1 Score: 112 bits (279), Expect = 5.620e-29
Identity = 59/131 (45.04%), Postives = 80/131 (61.07%), Query Frame = 1
Query:    7 PHTIFHLVEKSVWQN---AKNDYTPATYKQDGFIHATAEPGLLLPVANHFYAEVPGAFLCLAIDSLRIGAEVRYESATPVGD-KPAMTGDQLTAAAEQLFPHIYGPLPREAVMAELAVTRSEDGTFLAIEG 387
            P  I+H+ +K+++ +   +K  Y P T++QDGFIHAT EP  LL V NHFY   PG ++CL ID   +G    YE+  PVG+ +  + GD   AA    FPHIYG LPR A++    V R E G FL+I+G
Sbjct:   17 PSVIYHICDKALFHSQMDSKAIYFPPTFQQDGFIHATREPACLLTVGNHFYKSSPGDWVCLEIDPAYLGCRCIYETPAPVGEIESHVKGD---AATSPHFPHIYGGLPRLAIVRTFDVIRGEQGEFLSIKG 144          
BLAST of mRNA_P-wetherbeei_contig11489.1.1 vs. uniprot
Match: A0A2E1N7J0_9GAMM (DUF952 domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A2E1N7J0_9GAMM)

HSP 1 Score: 110 bits (276), Expect = 2.630e-28
Identity = 60/130 (46.15%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   16 IFHLVEKSVWQNAKND---YTPATYKQDGFIHATAEPGLLLPVANHFYAEVPGAFLCL--AIDSL-RIGAEVRYESATPVGDKPAMTGDQLTAAAEQLFPHIYGPLPREAVMAELAVTRSEDGTFLAIEG 387
            +FHLV+ S+W+ +      Y P TY+QDGF H T+ P  LL VANHFY  V G + CL   +DSL + G +V +E   PVGDK          A ++LFPHI G +PREAV+    V RS+ G FL+I G
Sbjct:   35 VFHLVQVSLWKESLESGSIYYPPTYEQDGFTHGTSNPNKLLNVANHFYPGVEGEWYCLKMTVDSLAKAGVKVIFEGTAPVGDK----APDFEGANDELFPHILGGIPREAVIKSYPVIRSKSGAFLSIPG 160          
BLAST of mRNA_P-wetherbeei_contig11489.1.1 vs. uniprot
Match: A0A2P6V9I7_9CHLO (Uncharacterized protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V9I7_9CHLO)

HSP 1 Score: 109 bits (272), Expect = 1.060e-27
Identity = 61/149 (40.94%), Postives = 83/149 (55.70%), Query Frame = 1
Query:   19 FHLVEKSVWQNA---KNDYTPATYKQDGFIHATAEPGLLLPVANHFYAEVPGAFLCLAIDSLRIGAEVRYESATPVGDKPA---MTGDQL--------------------TAAAEQLFPHIYGPLPREAVMAELAVTRSEDGTFLAIEG 387
            +HLV    W++    K  Y P TY+QDGFIH TA+P LLL VANHF+ +  G ++ L +DS ++ AEV++E A PVG+K +   + GDQ                         E LFPH+YG +  EAV+ EL V R   G FL+I+G
Sbjct:    4 YHLVPSVAWRSCVETKTPYYPPTYQQDGFIHLTADPALLLTVANHFFVDSSGEWVVLVLDSGKLTAEVKFEPAAPVGNKSSGGLLGGDQQQXXXXADGAXXXXPAXPAAEAQPQEPLFPHLYGTIDFEAVVGELPVERDASGRFLSIQG 152          
BLAST of mRNA_P-wetherbeei_contig11489.1.1 vs. uniprot
Match: A0A2P6TTT3_CHLSO (Uncharacterized protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TTT3_CHLSO)

HSP 1 Score: 108 bits (271), Expect = 1.200e-27
Identity = 58/147 (39.46%), Postives = 83/147 (56.46%), Query Frame = 1
Query:   16 IFHLVEKSVWQNAKND---YTPATYKQDGFIHATAEPGLLLPVANHFYAEVPGAFLCLAIDSLRIGAEVRYESATPVGDKPA---MTGDQLTAAA-----------------EQLFPHIYGPLPREAVMAELAVTRSEDGTFLAIEG 387
            ++H+ E  +W+ A++    Y P TY+QDGFIH +A+P LLL +ANHFY +  G ++ L +D  R+ AEV++E A PVG+K +   + G                        E LFPH+YG +  EAV  ELA+ R+  G FL IEG
Sbjct:    8 LYHMCEAQLWRAAQSSGTPYLPPTYEQDGFIHLSADPSLLLTIANHFYTDTKGDWVVLVLDPARLTAEVKFEPAAPVGNKSSGGLLAGQXXXXXXXXXXXXXXXXXXXXXXXEPLFPHLYGSIDFEAVQQELAMQRAPAGRFLGIEG 154          
BLAST of mRNA_P-wetherbeei_contig11489.1.1 vs. uniprot
Match: A0A7S2TE52_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TE52_9EUKA)

HSP 1 Score: 106 bits (265), Expect = 4.430e-27
Identity = 54/125 (43.20%), Postives = 79/125 (63.20%), Query Frame = 1
Query:   16 IFHLVEKSVWQNAKN-DYTPATYKQDGFIHATAEPGLLLPVANHFYAEVPGAFLCLAIDSLRIGAEVRYESATPVGDKPAMTGDQLTAAAEQLFPHIYGPLPREAVMAELAVTRSEDGTFLAIEG 387
            I+H++EK  W   +  +Y P TYKQDGF HAT E   L+ +AN FY E    ++C+AID+ ++ AEV++E+  PVG+K    GD+  +  + LFPHIYGP+    V+    + R + G FL+IEG
Sbjct:    8 IYHMLEKKEWAACEGKEYYPKTYKQDGFTHATGEAKFLIKIANMFYKESKEEWVCIAIDTNKLKAEVKWEAPAPVGNKK---GDE--SEPKVLFPHIYGPILHAEVVKVYPIVRCDKGEFLSIEG 127          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11489.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2M9N9_9CHLO2.310e-3651.18Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A7J7QIK8_9CHLO1.880e-3550.38Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A2E3QMP5_9GAMM3.290e-3148.46DUF952 domain-containing protein n=1 Tax=Gammaprot... [more]
A0A2D6V7Y3_9GAMM1.050e-3048.85DUF952 domain-containing protein n=1 Tax=Gammaprot... [more]
A0A3D1EN72_9GAMM3.210e-3050.38DUF952 domain-containing protein n=1 Tax=Gammaprot... [more]
A0A482SF44_9ARCH5.620e-2945.04DUF952 domain-containing protein n=1 Tax=archaeon ... [more]
A0A2E1N7J0_9GAMM2.630e-2846.15DUF952 domain-containing protein n=2 Tax=Bacteria ... [more]
A0A2P6V9I7_9CHLO1.060e-2740.94Uncharacterized protein n=1 Tax=Micractinium condu... [more]
A0A2P6TTT3_CHLSO1.200e-2739.46Uncharacterized protein n=1 Tax=Chlorella sorokini... [more]
A0A7S2TE52_9EUKA4.430e-2743.20Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11489contigP-wetherbeei_contig11489:1376..2015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog227086.JGI_V11_137554
PFAMsDUF952
Model size408
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.86e-29
EggNOG OGs2D0EA@1|root,2SDWH@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF952
Ec32 orthologEc-06_008900.1
DescriptionProtein of unknown function (DUF952)
Cds size408
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185913.4941602-CDS-P-wetherbeei_contig11489:1375..16291683185913.4941602-CDS-P-wetherbeei_contig11489:1375..1629Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11489 1376..1629 -
1683185913.5050192-CDS-P-wetherbeei_contig11489:1861..20151683185913.5050192-CDS-P-wetherbeei_contig11489:1861..2015Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11489 1862..2015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11489.1.1prot_P-wetherbeei_contig11489.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11489 1376..2015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11489.1.1

>prot_P-wetherbeei_contig11489.1.1 ID=prot_P-wetherbeei_contig11489.1.1|Name=mRNA_P-wetherbeei_contig11489.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
MPPHTIFHLVEKSVWQNAKNDYTPATYKQDGFIHATAEPGLLLPVANHFY
AEVPGAFLCLAIDSLRIGAEVRYESATPVGDKPAMTGDQLTAAAEQLFPH
IYGPLPREAVMAELAVTRSEDGTFLAIEGAEARTA*
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mRNA from alignment at P-wetherbeei_contig11489:1376..2015-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11489.1.1 ID=mRNA_P-wetherbeei_contig11489.1.1|Name=mRNA_P-wetherbeei_contig11489.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=640bp|location=Sequence derived from alignment at P-wetherbeei_contig11489:1376..2015- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCGCACACCATTTTTCACTTGGTGGAAAAGAGCGTTTGGCAAAA CGCGAAAAACGACTATACTCCGGCAACATACAAGCAAGACGGCTTCATTC ATGCAACAGCAGAGCCCGGCTTGTTGCTCCCCGTGGCGAATCATTTTTAT GCTGGTCCGTGGTCGCGCGTAAAGGGAGACGTTTTGCCTTCTTATAACAA TTAACATCCGTTTCTCGCATCACACAGGAGTTCAAGGCGTGTCCGATTTG CCCTGCGCTCTCCACCTTGACCATTTATATAACATGGCGTTGGAAGCGCG CAAGAACCTGTTATTGTTGCGGTCCCTCTTGACGCACCCAGCGCCGAACA TTTTTGGTTTCCTTCCCGCTGCTGCTGCTGCCGCAGAAGTGCCCGGGGCG TTTCTGTGTCTCGCGATCGACAGCCTGCGGATCGGCGCAGAGGTGCGCTA CGAGTCGGCGACGCCCGTCGGCGACAAGCCCGCCATGACGGGAGACCAGC TGACGGCGGCGGCGGAGCAGCTCTTCCCGCACATTTACGGGCCGCTGCCG CGCGAGGCGGTCATGGCCGAACTGGCCGTGACGCGCAGCGAAGACGGCAC GTTTTTGGCGATCGAGGGCGCGGAAGCTCGGACGGCGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11489:1376..2015-

>mRNA_P-wetherbeei_contig11489.1.1 ID=mRNA_P-wetherbeei_contig11489.1.1|Name=mRNA_P-wetherbeei_contig11489.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig11489:1376..2015- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCGCACACCATTTTTCACTTGGTGGAAAAGAGCGTTTGGCAAAA
CGCGAAAAACGACTATACTCCGGCAACATACAAGCAAGACGGCTTCATTC
ATGCAACAGCAGAGCCCGGCTTGTTGCTCCCCGTGGCGAATCATTTTTAT
GCTGAAGTGCCCGGGGCGTTTCTGTGTCTCGCGATCGACAGCCTGCGGAT
CGGCGCAGAGGTGCGCTACGAGTCGGCGACGCCCGTCGGCGACAAGCCCG
CCATGACGGGAGACCAGCTGACGGCGGCGGCGGAGCAGCTCTTCCCGCAC
ATTTACGGGCCGCTGCCGCGCGAGGCGGTCATGGCCGAACTGGCCGTGAC
GCGCAGCGAAGACGGCACGTTTTTGGCGATCGAGGGCGCGGAAGCTCGGA
CGGCGTAA
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