mRNA_P-wetherbeei_contig11481.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig11481.1.1 vs. uniprot
Match: A0A835ZDU2_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDU2_9STRA) HSP 1 Score: 192 bits (488), Expect = 6.560e-55 Identity = 99/193 (51.30%), Postives = 139/193 (72.02%), Query Frame = 1 Query: 448 VPELESHVESGLYASIKEQWRIHRKQKDLQEIIGRSVSVAEWAGAAGYRDSATMLAAINAGSRALNQLVRHHRPLVCAMARRYRRVTRFLTYDDLVQEGSVGLLSAVDHYDPTRGARFGTYAAWRVRGYMLRAIANKDTLIRLPVHVQDLGDRIRQAARRLGATGGPPPSDDELAGAVGVSLEAFRRHQALVE 1026 V EL+ VE+ LYA+I+E RIH KQ+ L+ I+GRS VAEWA AAGY DS +MLAA+ G +A +LV+ R +V A+A++Y +T+ LT DDL+QEG++GLLSA D +DP +GARFGTYAA+RV+ +LRAIANKD IR+PVH+QD+ ++R A +RL T G PP+D E+A + + H+ +++ Sbjct: 44 VTELDPDVENALYAAIREHSRIHAKQEQLECILGRSALVAEWASAAGYMDSMSMLAALREGQKAQTKLVKSQRAMVRAIAKKYAFITKSLTLDDLIQEGNLGLLSAADKFDPDKGARFGTYAAFRVKASVLRAIANKDRQIRIPVHIQDVAGKVRSATQRLQVTLGRPPTDAEIAATLDMLPSEVTAHREMMD 236
BLAST of mRNA_P-wetherbeei_contig11481.1.1 vs. uniprot
Match: A0A6H5JMH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH8_9PHAE) HSP 1 Score: 134 bits (337), Expect = 5.150e-32 Identity = 79/179 (44.13%), Postives = 115/179 (64.25%), Query Frame = 1 Query: 454 ELESHVESGLYASIKEQWRIHRKQKDLQEIIGRSVSVAEWAGAAGYRDSATMLAAINAGSRALNQLVRHHRPLVCAMARRYRRVTRFLTYDDLVQEGSVGLLSAVDHYDPTRGARFGTYAAWRVRGYMLRAIANKDTLIRLPVHVQDLGDRIRQAARRLGA-TGGPPPSDDELAGAVGV 987 +L E+ L I E RI Q +L+ R V+V EWA AAG+ + ++AA+ G +A L H+ LV ++A RY++V+R L+ DDL QEG+VGLL AV+ +DPT+G RF +YA +R++ +LRAIA+KD L+R+PVH QD RI A+ L +GG P+D +LA A+G+ Sbjct: 114 DLTKEEETALCELIVENRRIQDLQVELERKESRPVTVQEWAVAAGHPSAHQLMAALQEGRKAQRTLALCHQGLVRSVAYRYKQVSRNLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDAAMRILAASHALQLESGGDVPTDAQLAVALGM 292
BLAST of mRNA_P-wetherbeei_contig11481.1.1 vs. uniprot
Match: D7FPW8_ECTSI (RpoD n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW8_ECTSI) HSP 1 Score: 130 bits (328), Expect = 3.810e-31 Identity = 78/179 (43.58%), Postives = 114/179 (63.69%), Query Frame = 1 Query: 454 ELESHVESGLYASIKEQWRIHRKQKDLQEIIGRSVSVAEWAGAAGYRDSATMLAAINAGSRALNQLVRHHRPLVCAMARRYRRVTRFLTYDDLVQEGSVGLLSAVDHYDPTRGARFGTYAAWRVRGYMLRAIANKDTLIRLPVHVQDLGDRIRQAARRLGA-TGGPPPSDDELAGAVGV 987 +L E+ L I E RI Q +L+ R V+V EWA AAG+ + ++AA+ G +A L H+ LV ++A RY++V+R L+ DDL QEG+VGLL AV+ +D T+G RF +YA +R++ +LRAIA+KD L+R+PVH QD RI A+ L +GG P+D +LA A+G+ Sbjct: 52 DLTKEEETALCELIIENRRIQDLQVELERKESRPVTVQEWAVAAGHPSAHQLMAALQEGRKAQRTLALCHQGLVRSVAYRYKQVSRNLSLDDLTQEGNVGLLEAVEKFDSTKGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDAAMRILAASHALQLESGGDVPTDAQLAVALGM 230
BLAST of mRNA_P-wetherbeei_contig11481.1.1 vs. uniprot
Match: K0ISZ8_MARPO (RNA polymerase sigma factor n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=K0ISZ8_MARPO) HSP 1 Score: 114 bits (285), Expect = 2.830e-24 Identity = 73/193 (37.82%), Postives = 115/193 (59.59%), Query Frame = 1 Query: 457 LESHVESGLYASIKEQWRIHRKQKDLQEIIGRSVSVAEWAGAAGYRDSATMLAAINAGSRALNQLVRHHRPLVCAMARRYRRVTRFLTYDDLVQEGSVGLLSAVDHYDPTRGARFGTYAAWRVRGYMLRAIANKDTLIRLPVHVQDLGDRIRQAARRLGATGGPPPSDDELAGAVGVSLEAFRRHQALVESAR 1035 L S E L I++ R+ + DL+E +GR ++ EWA A G + ++ + I +G +++V + LV ++A+RY+ R +T DL+QEGS+GL+ + +D TRG +F TYA W +R + RAIA++ IRLPVHV +L RI +A L A G P D+E+A VG+S+E + +++SAR Sbjct: 318 LTSSEEIELAEGIQDLLRVESVKNDLREQMGREPTLMEWAKAVGT-ERHSLESRIKSGQACKDRMVNSNLRLVVSIAKRYQG--RGMTIQDLIQEGSMGLIRGAEKFDHTRGFKFSTYAHWWIRQAITRAIADQSRTIRLPVHVYELLSRITKAKSMLAAEHGRAPRDEEVAELVGLSIEKLKM---VIKSAR 504
BLAST of mRNA_P-wetherbeei_contig11481.1.1 vs. uniprot
Match: A0A1I2GNB8_9DELT (RNA polymerase primary sigma factor (Fragment) n=4 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I2GNB8_9DELT) HSP 1 Score: 106 bits (264), Expect = 2.860e-22 Identity = 59/147 (40.14%), Postives = 89/147 (60.54%), Query Frame = 1 Query: 589 YRDSATMLAAINAGSRALNQL-------VRHHRPLVCAMARRYRRVTRFLTYDDLVQEGSVGLLSAVDHYDPTRGARFGTYAAWRVRGYMLRAIANKDTLIRLPVHVQDLGDRIRQAARRLGATGGPPPSDDELAGAVGVSLEAFRR 1008 YRDSA + + A +A N + VR + LV A+ARR+ R + DL+Q+G++GL+ AVD +DP+RG RF TYAAW +R + RAI + D +RLP+H+ D ++ +A R G P+D+EL+ A G+S+E +R Sbjct: 157 YRDSAPFVRYVTAARKAHNAVMLAKNAFVRSNLRLVVAIARRFARSA--IPLQDLIQDGNIGLMKAVDRFDPSRGCRFATYAAWWIRYAITRAIVDTDRSVRLPLHMIDACKKVNRARREYEVMYGRSPTDEELSSATGISMERIQR 301
BLAST of mRNA_P-wetherbeei_contig11481.1.1 vs. uniprot
Match: UPI001CCB02CA (sigma-70 family RNA polymerase sigma factor n=1 Tax=Nannocystis pusilla TaxID=889268 RepID=UPI001CCB02CA) HSP 1 Score: 105 bits (263), Expect = 7.350e-22 Identity = 61/147 (41.50%), Postives = 88/147 (59.86%), Query Frame = 1 Query: 589 YRDSATMLAAINAGSRALNQL-------VRHHRPLVCAMARRYRRVTRFLTYDDLVQEGSVGLLSAVDHYDPTRGARFGTYAAWRVRGYMLRAIANKDTLIRLPVHVQDLGDRIRQAARRLGATGGPPPSDDELAGAVGVSLEAFRR 1008 YRDSA + A RA N L VR + LV A+ARR+ R + DL+Q+G++GL+ AVD +DP+RG RF TYAAW +R + RAI + D +RLP+H+ D ++ +A R G P+++EL+ A G+SLE +R Sbjct: 157 YRDSAPFFRYVAAARRAHNALMLAKNEFVRSNLRLVVAIARRFGRSQ--IPMQDLIQDGNIGLMKAVDRFDPSRGCRFATYAAWWIRYAITRAIVDTDRSVRLPLHMIDACKKVNRARREYEVMYGRAPTEEELSSATGISLERIQR 301
BLAST of mRNA_P-wetherbeei_contig11481.1.1 vs. uniprot
Match: UPI001A040A10 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI001A040A10) HSP 1 Score: 103 bits (258), Expect = 1.010e-21 Identity = 75/204 (36.76%), Postives = 111/204 (54.41%), Query Frame = 1 Query: 397 NQQAADDVEAVVAAAAAVPELESHVESGLYAS-IKEQWRIHRKQKDLQEIIGRSVSVAEWAGAAGYRDSATMLAAINAGSRALNQLVRHHRPLVCAMARRYRRVTRFLTYDDLVQEGSVGLLSAVDHYDPTRGARFGTYAAWRVRGYMLRAIANKDTLIRLPVHVQDLGDRIRQAARRLGATGGPPPSDDELAGAVGVSLEAFR 1005 N +++D V A + A VP L +H E LY +K ++ L E G WA A A + AA+ AG RA Q++R + LV ++A++Y R L DLVQEGS+GL AV+ +DP +G RF TYA W +R M RAIA K +RLP+H+ + ++I+QA R+L + G +E+A + +S + R Sbjct: 3 NSKSSDTVRAYLKAIGRVPLL-THEEEILYGKQVKHMMAYDAVREALTEEFGEFPDWETWAARA-ETTVADLRAALAAGERAKQQMIRANLRLVVSIAKKYTE--RNLDLLDLVQEGSIGLNRAVEKFDPAKGYRFSTYAYWWIRQAMTRAIAEKSRTVRLPIHINETINKIKQAQRQLAQSLGRVAKVEEIAEHLDLSTDRVR 202
BLAST of mRNA_P-wetherbeei_contig11481.1.1 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.060e-21 Identity = 60/165 (36.36%), Postives = 98/165 (59.39%), Query Frame = 1 Query: 502 QWRIHRKQKDLQEIIGRSVSVAEWAGAAGYRDSATMLAAINAGSRALNQLVRHHRPLVCAMARRYRRVTRFLTYDDLVQEGSVGLLSAVDHYDPTRGARFGTYAAWRVRGYMLRAIANKDTLIRLPVHVQDLGDRIRQAARRLGATGGPPPSDDELAGAVGVSLE 996 +W R++ +++ + R + AEWA A G D+ + I RA ++ + LV ++A+RY T L+ DL QEGS+GL+ AV+ +DP RG RF TYA W ++ ++RAIA++ IRLPVH+ D + +R+ R L G P+ +E+A A G++++ Sbjct: 204 KWEEVRERLEIE--LARPPTYAEWAAAVGV-DTKKLKRQIRRSQRAKAAMIESNLRLVISIAKRYTSRTNTLSVQDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEEIAEAAGITVD 365
BLAST of mRNA_P-wetherbeei_contig11481.1.1 vs. uniprot
Match: A0A5J4YYF1_PORPP (RNA polymerase sigma factor SigA n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYF1_PORPP) HSP 1 Score: 105 bits (262), Expect = 1.230e-21 Identity = 66/180 (36.67%), Postives = 103/180 (57.22%), Query Frame = 1 Query: 457 LESHVESGLYASIKEQWRIHRKQKDLQEIIGRSVSVAEWAGAAGYRDSATMLAAINAGSRALNQLVRHHRPLVCAMARRYRRVTRFLTYDDLVQEGSVGLLSAVDHYDPTRGARFGTYAAWRVRGYMLRAIANKDTLIRLPVHVQDLGDRIRQAARRLGATGGPPPSDDELAGAVGVSLE 996 L S ES L + IK+ + R+ ++ +E+ R + EWA S +A ++ G RA Q+V + LV ++A+RY + R LT+ DL+QEGSVGL+ + +D +G +F TYA W +R M RAI++ IRLPVHV D +R+ ++ L G P+++ELA + + LE Sbjct: 139 LNSESESALCSKIKQLLKFEREFEEFRELFDREPTEPEWAARCNVELSEFRVA-LHQGRRAKEQMVAANLRLVVSIAKRY--LNRGLTFQDLIQEGSVGLIRGTEKFDADKGFKFSTYATWWIRQAMTRAISDHSRPIRLPVHVNDTLAHVRRYSKELQQGLGRAPTEEELAERMCLPLE 315
BLAST of mRNA_P-wetherbeei_contig11481.1.1 vs. uniprot
Match: Q39515_CYACA (Chloroplast RNA polymerase sigma subunit n=2 Tax=Cyanidiaceae TaxID=265316 RepID=Q39515_CYACA) HSP 1 Score: 105 bits (261), Expect = 3.790e-21 Identity = 62/162 (38.27%), Postives = 92/162 (56.79%), Query Frame = 1 Query: 523 QKDLQEIIGRSVSVAEWAGAAGYRDSATMLAA-INAGSRALNQLVRHHRPLVCAMARRYRRVTRFLTYDDLVQEGSVGLLSAVDHYDPTRGARFGTYAAWRVRGYMLRAIANKDTLIRLPVHVQDLGDRIRQAARRLGATGGPPPSDDELAGAVGVSLEAFR 1005 Q+ +E G+S + +EWA GY D L I G +A ++V + LV ++A+RY R + DL+QEGS+GL+ V+ +D RG RF TYA W +R + RAI++ IRLPVHV D IR+ + L G PPS++E+ +VG+ +R Sbjct: 313 QRSFREEHGKSPTESEWAQGCGYGDDVEKLREHIRDGRKAKERMVTANLRLVVSIAKRYSN--RGVALQDLIQEGSIGLIRGVEKFDAERGFRFSTYATWWIRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELGRPPSEEEICESVGIDRAKYR 472 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11481.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig11481.1.1 >prot_P-wetherbeei_contig11481.1.1 ID=prot_P-wetherbeei_contig11481.1.1|Name=mRNA_P-wetherbeei_contig11481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=353bp RRIPHTAVRASAPLARGKKHECWKRRSKPESTLSTMQTSGLKGAPHMLRAback to top mRNA from alignment at P-wetherbeei_contig11481:40..1207- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig11481.1.1 ID=mRNA_P-wetherbeei_contig11481.1.1|Name=mRNA_P-wetherbeei_contig11481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1168bp|location=Sequence derived from alignment at P-wetherbeei_contig11481:40..1207- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig11481:40..1207- >mRNA_P-wetherbeei_contig11481.1.1 ID=mRNA_P-wetherbeei_contig11481.1.1|Name=mRNA_P-wetherbeei_contig11481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1059bp|location=Sequence derived from alignment at P-wetherbeei_contig11481:40..1207- (Phaeothamnion wetherbeei SAG_119_79)back to top |