mRNA_P-wetherbeei_contig11451.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11451.2.1
Unique NamemRNA_P-wetherbeei_contig11451.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11451.2.1 vs. uniprot
Match: A0A2N9EIR8_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EIR8_FAGSY)

HSP 1 Score: 198 bits (503), Expect = 6.810e-53
Identity = 129/401 (32.17%), Postives = 197/401 (49.13%), Query Frame = 1
Query:    1 RYRARLVTQGFSQRPGMDYGATFAPVMSAASMRYLLALAAELNFEVHQMDVVTADGLGAVYADCCVFVRGDASPVAAAAGNGTFLAVGIHADDLLSTGAPLSATNDFKTSISRRFAMKDLGRIHTLLGILVRQDLMAGR----------------------------------------------------PLRDLVGAVLYLAVTTRPDIFDQVRALM*CCHDPRRPDGLTALWLLRYLKGTREKGLLYSWSTAARVPTPGAAIGDADADWAQDLDSRRSVGAYVFLRSGAAVSWRSKMQDCTAASTCEAEYVAAAYAVQHALWLQWLAWGLGLSMTAPTPIHEENQPCSDIATNLISERRVNHIDIQFHIVRERVESGEIILVPTKTKDQLADLLTKPL 1047
            R++ARLV +G+SQR G+DY   F+PV+   S+R +L L A  + E+ Q+DV TA   G +  +  +F+     P      +G+++ + ++ DD+L     +   N  K+ + + F MKDLG    +LG+ +R+D  A +                                                    P    VG ++Y  V TRPD+   V  +     +PRR       W+ RYLKGT E G+L+S     R P   + +G  DAD+A ++D RRS   YVF  SG  + W+S +Q   A ST EAEY+A A A + ALWL+ L   LGL+      +H ++Q    +A N +   R  HID++FH +RE + +G+I+L    T +  AD+LTKP+
Sbjct:  755 RFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLTLVANQDLELEQLDVKTAFLHGNLEEE--IFME---QPEGFKQPDGSYIFLLLYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIRRDREARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFRLSSSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPRREHWNAVKWIFRYLKGTAEHGILFS-----RQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAIAEAAKEALWLKGLVKELGLNQGG-VQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPV 1144          
BLAST of mRNA_P-wetherbeei_contig11451.2.1 vs. uniprot
Match: A0A6S7IYL0_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IYL0_PARCT)

HSP 1 Score: 189 bits (480), Expect = 5.210e-52
Identity = 135/395 (34.18%), Postives = 193/395 (48.86%), Query Frame = 1
Query:    1 RYRARLVTQGFSQRPGMDYGATFAPVMSAASMRYLLALAAELNFEVHQMDVVTADGLGAVYADCCVFVRGDASPVAA---AAGNGTFLAVGIHADDLLSTGAPLSATNDFKTSISRRFAMKDLGRIHTLLGILVRQD---LMAGRPL------------------------------------------RDLVGAVLYLAVTTRPDIFDQVRALM*CCHDPRRPDGLTALWLLRYLKGTREKGLLYSWSTAARVPTPGAAIGDADADWAQDLDSRRSVGAYVFLRSGAAVSWRSKMQDCTAASTCEAEYVAAAYAVQHALWLQWLAWGLGLSMTAPTPIHEENQPCSDIATNLISERRVNHIDIQFHIVRERVESGEIILVPTKTKDQLADLLTK 1041
            R++ARLV Q FSQR G+DY  TF+PV+   S+R ++AL+ +   ++HQ+DV TA  L     D     + +   V     +  +G    V IH DD++  G         K SI+ RF +KD+G +  +LG+ V Q+   +  G+P                                           +  V ++LYL+  TRPDI   V  +     +P          + RYLKGT   GLLYS + +         +G +DADWA DL+ R+S   Y F  +GAAVSWRSK + C A ST EAEYVA + A Q ALW+  L   L +++  P  I+E NQ    ++ NL    R  HIDI++H VR++VE   + ++   T   LADL TK
Sbjct:  105 RHKARLVAQCFSQRYGVDYDETFSPVVRFESIRTVIALSVQKGLKLHQVDV-TAAFLNGELEDEVYVKQSEGLEVKGKQTSEEDGDIFIVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELQYILGLQVIQEDGKVWIGQPTYTASIIKKYDMENCKPVETHVNLSSKLVSAMEDSELFNKEEYQSAVVSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENASPDC------VGFSDADWAGDLNDRKSTSGYRFQINGAAVSWRSKKKTCVALSTAEAEYVAFSAAAQEALWMGQLLTDLNVNIDEPVTIYEGNQSAIAMSKNLQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTK 492          
BLAST of mRNA_P-wetherbeei_contig11451.2.1 vs. uniprot
Match: A0A060SR77_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SR77_PYCCI)

HSP 1 Score: 193 bits (490), Expect = 6.430e-52
Identity = 142/452 (31.42%), Postives = 199/452 (44.03%), Query Frame = 1
Query:    1 RYRARLVTQGFSQRPGMDYGATFAPVMSAASMRYLLALAAELNFEVHQMDVVTA-------------------DGLGAV---------------------------------YADCCVFVRGDASPVAAAAGNGTFLAVGIHADDLLSTGAPLSATNDFKTSISRRFAMKDLGRIHTLLGILVRQDLMAGR--------------------------PL---------------------RDLVGAVLYLAVTTRPDIFDQVRALM*CCHDPRRPDGLTALWLLRYLKGTREKGLLYSWSTAARVPTPGAAIGDADADWAQDLDSRRSVGAYVFLRSGAAVSWRSKMQDCTAASTCEAEYVAAAYAVQHALWLQWLAWGLGLSMTAPTPIHEENQPCSDIATNLISERRVNHIDIQFHIVRERVESGEIILVPTKTKDQLADLLTKPLPAPR 1059
            +++ARLV QGFSQ PG+DY  TFAPV    S+R LLAL   LN ++  +D+V A                   DG   V                                  +D CV+VR  AS +           VG+H DD+++              +S  F +  LG    ++G+ V +D  AG                           PL                     + +VG+++Y A+ TRPDI   V+ L     +P     + A  +LRYLKGTR  G++Y  +       P   IG +DADWA DLD R+S+   VFL  GA ++W S+ Q   A S+ EAEY+AA+ A     WL+ L   LG   + PTP++ +NQ     A    S  R  HIDI +H +RER+ S E+++    ++D LAD LTK LP PR
Sbjct:  297 KHKARLVAQGFSQIPGVDYIETFAPVARLESLRTLLALGTILNLDIQVVDIVGAYLNGRLREEIYMRQPPMYEDGTSNVCRLHLTLYGLKQSGREWNHELDDKFAKLGFTRLVSDLCVYVRRAASKI---------WMVGVHVDDMITLANTPDDNKALHDELSNYFEITRLGDARQIVGLEVTRDRNAGTLALRQSQYIDRILARFGMTDANPVDTPLDANAGRRCHNGPEDPDARMLYQAMVGSLMYAALGTRPDIAHAVQQLSQYASNPGPAHIMAAKRVLRYLKGTRMLGIIYCANATTDSDHPLEPIGYSDADWANDLDDRKSIAGQVFLLGGAPITWSSRKQRTVAKSSMEAEYMAASAAASEIAWLRALLTELGFPPSGPTPLYVDNQSAIASANAQTSHARTKHIDIHYHFIRERIASNEVVVNHCPSEDNLADALTKALPRPR 739          
BLAST of mRNA_P-wetherbeei_contig11451.2.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 191 bits (485), Expect = 1.900e-50
Identity = 139/447 (31.10%), Postives = 205/447 (45.86%), Query Frame = 1
Query:    1 RYRARLVTQGFSQRPGMDYGATFAPVMSAASMRYLLALAAELNFEVHQMDVVTA--------------------------------------------------DGLGAV--YADCCVFVRGDASPVAAAAGNGTFLAVGIHADDLLSTGAPLSATNDFKTSISRRFAMKDLGRIHTLLGILVRQDL---------------------MAG------------------------RPLRDLVGAVLYLAVTTRPDIFDQVRALM*CCHDPRRPDGLTALWLLRYLKGTREKGLLYSWSTAARVPTPGAAIGDADADWAQDLDSRRSVGAYVFLRSGAAVSWRSKMQDCTAASTCEAEYVAAAYAVQHALWLQWLAWGLGLSMTAPTPIHEENQPCSDIATNLISERRVNHIDIQFHIVRERVESGEIILVPTKTKDQLADLLTKPLP 1050
            +Y+ARLV +GF+Q  G+D+  TFAPV   AS+R LLALAA+L+ E+HQMDV +A                                                  + LG    ++D  VF + D         +G  L + I+ DD+L     L+A    K  +  RF M DLG    LLG+ + +D                      MA                         +P + ++G+++Y  + TRPD+   V AL      P +   +  +   RYL+GT +K L+Y  +T  + P     +G  DADWA +++ RRSV  +VFL S  AVSW SK Q  TA S+ EAEY+A A+  + A+WL+     +G     PTP+  +NQ    ++ N     R  HI +++H +RE+ +SGEI      T +Q+AD+LTK LP
Sbjct:  988 KYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFHRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKND---------DGILLIIAIYVDDMLILSDNLTAVTTLKEDLKSRFEMTDLGEARWLLGMEITRDRPRRVLELSQHQYVEKCLAQHGMADCRPVSTPMAQNQKLVKLSEAEIDPKPYQSVLGSLMYAMIGTRPDLAFTVGALSQHAATPGKEHWIALMRAYRYLRGTADKKLVYCGTTKEKEPL----LGYVDADWAANVNDRRSVTGFVFLISEGAVSWSSKRQHSTAQSSTEAEYMAGAHGTKEAVWLRAFLSEIGQVQKGPTPLLIDNQSAIALSKNAAFHERTKHIAVRYHFIREKYDSGEIEPEYVPTGNQVADVLTKGLP 1421          
BLAST of mRNA_P-wetherbeei_contig11451.2.1 vs. uniprot
Match: A0A5D3DF53_CUCME (Putative copia-type polyprotein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DF53_CUCME)

HSP 1 Score: 184 bits (468), Expect = 2.390e-50
Identity = 140/439 (31.89%), Postives = 201/439 (45.79%), Query Frame = 1
Query:    1 RYRARLVTQGFSQRPGMDYGATFAPVMSAASMRYLLALAAELNFEVHQMDVVTADGLGAVYADCCV------FVRGDASPVAAAA----------------------------------------GNGTFLAVGIHADDLLSTGAPLSATNDFKTSISRRFAMKDLGRIHTLLGILVRQ--------------------DLMAGRPL------------------------RDLVGAVLYLAVTTRPDIFDQVRALM*CCHDPRRPDGLTALWLLRYLKGTREKGLLYSWSTAARVPTPGAAIGDADADWAQDLDSRRSVGAYVFLRSGAAVSWRSKMQDCTAASTCEAEYVAAAYAVQHALWLQWLAWGLGLSMTAPTPIHEENQPCSDIATNLISERRVNHIDIQFHIVRERVESGEIILVPTKTKDQLADLLTKPL 1047
            RY+ARLV +G+SQR G+DY   FAPV    ++R L+ALAA+ N+++ QMDV +A   G +  +  +       V+G    V                                            G+G  L V ++ DDL+ TG   S   D K ++++ F M D+G +   LGI V+Q                    ++M  +P+                        + LVG++ YL  T RPDI   V  +      P       A  +LRYL+GT + GL YS S   ++       G  D+DWA D + R+S   YVF     A +W SK Q     STCEAEYVAAA  V HA+WL+ L   +G+    PT IH +N+    +A N +   R  HID +FH +R+ +   E+ +   KT+DQ+AD+LTKPL
Sbjct:   44 RYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGISISQERYTREILEKFNMMNSKPVATPIETGTKLSKHEKGDDVDPSYFKSLVGSLRYLTCT-RPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLE------GYCDSDWAGDTNYRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADILTKPL 475          
BLAST of mRNA_P-wetherbeei_contig11451.2.1 vs. uniprot
Match: A0A2N9I807_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I807_FAGSY)

HSP 1 Score: 190 bits (483), Expect = 3.390e-50
Identity = 129/382 (33.77%), Postives = 190/382 (49.74%), Query Frame = 1
Query:    1 RYRARLVTQGFSQRPGMDYGATFAPVMSAASMRYLLALAAELNFEVHQMDVVTADGLGAVYADCCVFVRGDASPVAAAAGNGTFLAVGIHADDLLSTGAPLSATNDFKTSISRRFAMKDLGRIHTLLGILVRQD-----------LMAGR-------------------PLRDLVGAVLYLAVTTRPDIFDQVRALM*CCHDPRRPDGLTALWLLRYLKGTREKGLLYSWSTAARVPTPGAAIGDADADWAQDLDSRRSVGAYVFLRSGAAVSWRSKMQDCTAASTCEAEYVAAAYAVQHALWLQWLAWGLGLSMTAPTPIHEENQPCSDIATNLISERRVNHIDIQFHIVRERVESGEIILVPTKTKDQLADLLTKPLPAP 1056
            R++ARLV +G+SQR G+DY   F+PV+   S+R +LAL A+ + E+ Q+DV TA   G +  +  +F+     P          L   +         +P       K+ + + F MKDLG    +LG+ + +D             +GR                   P    VG ++Y  V TRPD+   V  +     +P R       W+ RYLKGT E G+L+S     R P   + +G  DAD+A ++D RRS   YVF  SG  + W+S +Q   A ST EAEY+A A A + ALWL+ L   LGL+      +H ++Q    +A N +   R  HID++FH +RE + +G+I+L    T +  AD+LTKPLP P
Sbjct:  800 RFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEE--IFME---QPEGFKQPGTENLVCRLKKSLYGLKQSPRQWYKRLKSLLHKEFEMKDLGAAKKILGMEIHRDRGQESYGCLRKTTSGRLSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFS-----RQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLNQGG-VQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPLPQP 1170          
BLAST of mRNA_P-wetherbeei_contig11451.2.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 189 bits (479), Expect = 1.050e-49
Identity = 138/447 (30.87%), Postives = 205/447 (45.86%), Query Frame = 1
Query:    1 RYRARLVTQGFSQRPGMDYGATFAPVMSAASMRYLLALAAELNFEVHQMDVVTA--------------------------------------------------DGLGAV--YADCCVFVRGDASPVAAAAGNGTFLAVGIHADDLLSTGAPLSATNDFKTSISRRFAMKDLGRIHTLLGILVRQDL---------------------MAG------------------------RPLRDLVGAVLYLAVTTRPDIFDQVRALM*CCHDPRRPDGLTALWLLRYLKGTREKGLLYSWSTAARVPTPGAAIGDADADWAQDLDSRRSVGAYVFLRSGAAVSWRSKMQDCTAASTCEAEYVAAAYAVQHALWLQWLAWGLGLSMTAPTPIHEENQPCSDIATNLISERRVNHIDIQFHIVRERVESGEIILVPTKTKDQLADLLTKPLP 1050
            +Y+ARLV +GF+Q  G+D+  TFAPV   AS+R LLALAA+L+ E+HQMDV +A                                                  + LG    ++D  VF + D         +G  L + I+ DD+L     L+A    K  +  RF M DLG    LLG+ + +D                      MA                         +P +  +G+++Y  + TRPD+   V AL      P +   +  + + RYL+GT +K L+Y  +T  + P     +   DADWA ++++RRSV  +VFL S  AVSW SK Q  TA S+ EAEY+A A+  + A+WL+     +G     PTP+  +NQ    ++ N     R  HI +++H +RE+ +SGEI      T +Q+AD+LTK LP
Sbjct:  665 KYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKND---------DGILLIIAIYVDDMLILSDNLTAVTTLKEDLKSRFEMTDLGEARWLLGMEIARDRPRRVLELSQHQYVEKCLAQHGMANCRPVSTPMAQNQKLVKLSEAEIDPKPYQSALGSLMYAMIGTRPDLAFTVGALSQHAATPGKEHWIALMRVYRYLRGTADKKLVYCGTTKEKKPL----LRYVDADWAANVNNRRSVTGFVFLISEGAVSWSSKRQHSTAQSSTEAEYMAGAHGTKEAVWLRAFLSEIGQVQKGPTPLLIDNQSAIALSKNAAFHERTKHIAVRYHFIREKYDSGEIEPEYVPTGNQVADVLTKGLP 1098          
BLAST of mRNA_P-wetherbeei_contig11451.2.1 vs. uniprot
Match: A0A2N9FV67_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FV67_FAGSY)

HSP 1 Score: 188 bits (478), Expect = 1.510e-49
Identity = 134/455 (29.45%), Postives = 203/455 (44.62%), Query Frame = 1
Query:    1 RYRARLVTQGFSQRPGMDYGATFAPVMSAASMRYLLALAAELNFEVHQMDVVTADGLG----------------------------AVYA--------------------------DCCVFVRGDASPVAAAAGNGTFLAVGIHADDLLSTGAPLSATNDFKTSISRRFAMKDLGRIHTLLGILVRQDLMAGR----------------------------------------------------PLRDLVGAVLYLAVTTRPDIFDQVRALM*CCHDPRRPDGLTALWLLRYLKGTREKGLLYSWSTAARVPTPGAAIGDADADWAQDLDSRRSVGAYVFLRSGAAVSWRSKMQDCTAASTCEAEYVAAAYAVQHALWLQWLAWGLGLSMTAPTPIHEENQPCSDIATNLISERRVNHIDIQFHIVRERVESGEIILVPTKTKDQLADLLTKPL 1047
            R++ARLV +G+SQR G+DY   F+PV+   S+R +LAL A+ + E+ Q+DV TA   G                            ++Y                           DCCV+VR           +G+++ + ++ DD+L     +   N  K+ + + F MKDLG    +LG+ +R+D  A +                                                    P   +VG ++Y  V TRPD+   V  +     +P R       W+ RYLKGT E G+L+S     R P   + +G  DAD+A ++D RRS   YVF  SG  + W+S +Q   A ST EAEY+A A A + ALWL+ L   LGL+      +H ++Q    +A N +   R  HID++FH +RE + +G+I+L    T +  AD+LTKP+
Sbjct:  764 RFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMEQPEGFKQPGTENLVCRLKKSLYGLKQSPRQWYKRFDSYMIQIGYTRCEYDCCVYVR--------ILEDGSYIFLLLYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIRRDREARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFRLSGSQCPKNEEEIENMSKVPYASVVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFS-----RQPRTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLNQGG-VQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPV 1204          
BLAST of mRNA_P-wetherbeei_contig11451.2.1 vs. uniprot
Match: A0A2P4XRY4_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRY4_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.520e-49
Identity = 134/402 (33.33%), Postives = 198/402 (49.25%), Query Frame = 1
Query:    1 RYRARLVTQGFSQRPGMDYGATFAPVMSAASMRYLLALAAELNFEVHQMDVVTADGLGAV----YADCCVFVRGDASPVAAAAG--NGTFLAVGIHADDLLSTGAPLSATNDFKTSISRRFAMKDLGRIHTLLGILVRQD----------------------------------------------LMAGRPLRDLVGAVLYLAVTTRPDIFDQVRALM*CCHDPRRPDGLTALWLLRYLKGTREKGLLYSWSTAARVPTPGAAIGDADADWAQDLDSRRSVGAYVFLRSGAAVSWRSKMQDCTAASTCEAEYVAAAYAVQHALWLQWLAWGLGLSMTAPTPIHEENQPCSDIATNLISERRVNHIDIQFHIVRERVESGEIILVPTKTKDQL-ADLLTKPL 1047
            +++ARLV +GF+QRPG+DY  TFAPV    S+  + A+AAE + E   +DV TA   G V    Y D         + + +A    N T+  V ++ DDL+          + K ++   F++K+LG +   LGI + +                                                +A  P R+LVGA++YLA +TRPDI   V  +   C    +   + A  +L+YLK T++ GL+++      +      +G ADA+WA DLD+RRS   YVF  +G+A+SW+SK Q   A S+ EAEY+A   A+Q A+WL+ L   LG      T I++ENQ C  +A N     R  HIDI+FH + E+VES  + L    T + + AD  TK L
Sbjct:  560 KFKARLVAKGFTQRPGIDYTETFAPVARKESINAVAAIAAEEDMEAENVDVDTAFLYGDVEEELYMDQPDGFADQPTRIRSACWDKNSTYSIVIVYVDDLMIFSRTKDDIAEIKEALRSEFSIKELGDLKYCLGIEIHRKREKMIVMNQRAYIKRLAEKSGVDKCKDIYTPADSSAKLMKSSEDEYFVAKYPYRELVGALMYLATSTRPDIAYAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDVGLVFNGGIKGEL------VGYADANWAGDLDTRRSTTGYVFFFNGSAISWKSKRQPTVATSSTEAEYMALYNAIQEAVWLRQLLKDLGYENKGTTTIYQENQGCIALAKNPAYHTRTKHIDIKFHFLHEKVESKTVELEYKPTDEMMIADGFTKAL 955          
BLAST of mRNA_P-wetherbeei_contig11451.2.1 vs. uniprot
Match: A0A5A7V277_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7V277_CUCME)

HSP 1 Score: 188 bits (477), Expect = 2.120e-49
Identity = 140/439 (31.89%), Postives = 202/439 (46.01%), Query Frame = 1
Query:    1 RYRARLVTQGFSQRPGMDYGATFAPVMSAASMRYLLALAAELNFEVHQMDVVTADGLGAVYADCCV------FVRGDASPVAAAA----------------------------------------GNGTFLAVGIHADDLLSTGAPLSATNDFKTSISRRFAMKDLGRIHTLLGILVRQ--------------------DLMAGRPL------------------------RDLVGAVLYLAVTTRPDIFDQVRALM*CCHDPRRPDGLTALWLLRYLKGTREKGLLYSWSTAARVPTPGAAIGDADADWAQDLDSRRSVGAYVFLRSGAAVSWRSKMQDCTAASTCEAEYVAAAYAVQHALWLQWLAWGLGLSMTAPTPIHEENQPCSDIATNLISERRVNHIDIQFHIVRERVESGEIILVPTKTKDQLADLLTKPL 1047
            RY+ARLV +G+SQR G+DY   FAPV    ++R L+ALAA+ N+++ QMDV +A   G +  +  +       V+G    V                                            G+G  L V ++ DDL+ TG  +S   D K ++++ F M D+G +   LGI V+Q                    ++M  +P+                        + LVG++ YL  T RPDI   V  +      P       A  +LRYL+GT + GL YS S   ++       G  D+DWA D + R+S   YVF     A +W SK Q     STCEAEYVAAA  V HA+WL+ L   +G+    PT IH +N+    +A NL+   R  HID +FH +R+ +   E+ +   KT+DQ+AD+ TKPL
Sbjct:  910 RYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCVSMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYIREVLEKFNMMNSKPIATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCT-RPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLE------GYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHVDNKSAIALAKNLVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPL 1341          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11451.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9EIR8_FAGSY6.810e-5332.17Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A6S7IYL0_PARCT5.210e-5234.18Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
A0A060SR77_PYCCI6.430e-5231.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401G4V0_9APHY1.900e-5031.10Retrovirus-related Pol polyprotein from transposon... [more]
A0A5D3DF53_CUCME2.390e-5031.89Putative copia-type polyprotein n=2 Tax=Cucumis me... [more]
A0A2N9I807_FAGSY3.390e-5033.77Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A401H123_9APHY1.050e-4930.87Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9FV67_FAGSY1.510e-4929.45Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2P4XRY4_9STRA1.520e-4933.33Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A5A7V277_CUCME2.120e-4931.89Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11451contigP-wetherbeei_contig11451:374..1749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6334.EFV57947
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1059
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.71e-12
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria
DescriptionEncoded by
Cds size456
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185912.277149-UTR-P-wetherbeei_contig11451:373..4211683185912.277149-UTR-P-wetherbeei_contig11451:373..421Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11451 374..421 +
1683185912.3119855-UTR-P-wetherbeei_contig11451:1194..17491683185912.3119855-UTR-P-wetherbeei_contig11451:1194..1749Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11451 1195..1749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185912.2870762-CDS-P-wetherbeei_contig11451:421..5341683185912.2870762-CDS-P-wetherbeei_contig11451:421..534Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11451 422..534 +
1683185912.2949872-CDS-P-wetherbeei_contig11451:693..9371683185912.2949872-CDS-P-wetherbeei_contig11451:693..937Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11451 694..937 +
1683185912.3030784-CDS-P-wetherbeei_contig11451:1095..11941683185912.3030784-CDS-P-wetherbeei_contig11451:1095..1194Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11451 1096..1194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11451.2.1prot_P-wetherbeei_contig11451.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11451 422..1194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11451.2.1

>prot_P-wetherbeei_contig11451.2.1 ID=prot_P-wetherbeei_contig11451.2.1|Name=mRNA_P-wetherbeei_contig11451.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MDYGATFAPVMSAASMRYLLALAAELNFEVHQMDVVTADGLGAVYADCCV
FVRGDASPVAAAAGNGTFLAVGIHADDLLSTGAPLSATNDFKTSISRRFA
MKDLGRIHTLLGILVRQDLMAGRPLRDLVGAVLYLAVTTRPDIFDQVRAL
M*
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mRNA from alignment at P-wetherbeei_contig11451:374..1749+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11451.2.1 ID=mRNA_P-wetherbeei_contig11451.2.1|Name=mRNA_P-wetherbeei_contig11451.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1376bp|location=Sequence derived from alignment at P-wetherbeei_contig11451:374..1749+ (Phaeothamnion wetherbeei SAG_119_79)
CGCTACAGAGCACGGCTTGTGACGCAGGGCTTCTCGCAGCGGCCGGGCAT GGACTACGGCGCGACGTTTGCGCCGGTCATGTCGGCGGCCTCAATGCGGT ACCTCCTTGCACTGGCGGCAGAGCTGAACTTCGAGGTGCACCAGATGGAC GTGGTGACGGCGTATCTGAACGCTCCGCGGGAGGAACTGCTGTAGATGCA ACGGCCCCCGTGACAGTTTGGATTTCACGTCTGCGTGGCGCTGCAAGTGC TGACGGCCATTTACGGGTTAAAGCAGGCGGCGTACCTCTGGCAGCTTTGC CTACGCTCCTGGCTTCTGAGCGATGGTCTTGGGGCGGTGTACGCGGACTG CTGTGTTTTTGTGCGCGGCGATGCGTCTCCAGTTGCGGCAGCTGCTGGGA ACGGCACATTCCTGGCGGTCGGCATCCACGCCGACGATCTCCTCTCCACT GGCGCCCCGCTCTCAGCGACCAACGACTTCAAAACGTCCATCTCGCGACG TTTTGCCATGAAAGACTTGGGGCGCATCCACACCCTGCTCGGCATTCTTG TTCGGCAGGATCTTGTGGCCGGGACCATCCATCTCTCTCAGCCGCACTAC ATCGACGAGCTCCTGACCGTTTCCGCATGAGCGCCGCTTGGCCAATGCTC ACACCGACATGTCCCGGCGCCCCAACGCGGAGTACGTTCCGGGCGCCGGT AACGGCGGCTGAGGCTGCGGAGATGGCGGGTAGGCCGTTGCGGGATCTGG TTGGCGCGGTGCTCTACCTGGCTGTCACGACGCGGCCGGACATTTTCGAC CAGGTGCGGGCGCTGATGTGATGCTGCCACGACCCACGCCGACCTGATGG GCTGACCGCTCTCTGGCTGCTTCGCTACCTGAAGGGCACCCGGGAGAAAG GCCTGCTGTATAGTTGGAGTACTGCGGCCCGTGTGCCCACGCCGGGGGCG GCGATCGGCGACGCAGATGCGGACTGGGCTCAAGACTTGGACAGCCGTCG ATCGGTCGGTGCGTATGTTTTCCTGCGAAGTGGCGCCGCGGTTTCCTGGC GGTCAAAGATGCAGGACTGCACTGCCGCTTCGACATGCGAGGCCGAGTAC GTTGCCGCTGCCTATGCTGTGCAGCATGCACTCTGGCTGCAATGGCTGGC GTGGGGTCTCGGGCTTAGCATGACGGCTCCTACGCCAATCCACGAAGAAA ACCAGCCCTGCTCCGACATTGCCACCAACCTCATCAGCGAACGGCGGGTG AATCACATCGACATCCAGTTTCACATCGTGCGGGAGCGGGTAGAGAGTGG TGAGATAATTTTGGTGCCCACGAAGACGAAGGACCAGCTCGCAGATCTGC TTACCAAGCCGTTACCGGCTCCCCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11451:374..1749+

>mRNA_P-wetherbeei_contig11451.2.1 ID=mRNA_P-wetherbeei_contig11451.2.1|Name=mRNA_P-wetherbeei_contig11451.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig11451:374..1749+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTACGGCGCGACGTTTGCGCCGGTCATGTCGGCGGCCTCAATGCG
GTACCTCCTTGCACTGGCGGCAGAGCTGAACTTCGAGGTGCACCAGATGG
ACGTGGTGACGGCCGATGGTCTTGGGGCGGTGTACGCGGACTGCTGTGTT
TTTGTGCGCGGCGATGCGTCTCCAGTTGCGGCAGCTGCTGGGAACGGCAC
ATTCCTGGCGGTCGGCATCCACGCCGACGATCTCCTCTCCACTGGCGCCC
CGCTCTCAGCGACCAACGACTTCAAAACGTCCATCTCGCGACGTTTTGCC
ATGAAAGACTTGGGGCGCATCCACACCCTGCTCGGCATTCTTGTTCGGCA
GGATCTTATGGCGGGTAGGCCGTTGCGGGATCTGGTTGGCGCGGTGCTCT
ACCTGGCTGTCACGACGCGGCCGGACATTTTCGACCAGGTGCGGGCGCTG
ATGTGA
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