mRNA_P-wetherbeei_contig1141.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1141.1.1
Unique NamemRNA_P-wetherbeei_contig1141.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1141.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1141contigP-wetherbeei_contig1141:1610..3089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1163
Hectar predicted targeting categoryother localisation
Exons3
Cds size825
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185910.4052818-UTR-P-wetherbeei_contig1141:1609..18531683185910.4052818-UTR-P-wetherbeei_contig1141:1609..1853Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1141 1610..1853 -
1683185910.4358733-UTR-P-wetherbeei_contig1141:2694..27201683185910.4358733-UTR-P-wetherbeei_contig1141:2694..2720Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1141 2695..2720 -
1683185910.443747-UTR-P-wetherbeei_contig1141:3021..30891683185910.443747-UTR-P-wetherbeei_contig1141:3021..3089Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1141 3022..3089 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185910.4197922-CDS-P-wetherbeei_contig1141:1853..20271683185910.4197922-CDS-P-wetherbeei_contig1141:1853..2027Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1141 1854..2027 -
1683185910.4279208-CDS-P-wetherbeei_contig1141:2043..26941683185910.4279208-CDS-P-wetherbeei_contig1141:2043..2694Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1141 2044..2694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1141.1.1prot_P-wetherbeei_contig1141.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1141 1854..2694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1141.1.1

>prot_P-wetherbeei_contig1141.1.1 ID=prot_P-wetherbeei_contig1141.1.1|Name=mRNA_P-wetherbeei_contig1141.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=275bp
MSSQTLRDLRSRCGGRSGAPSFQYGSCMDKRRQVFVTELLLGPRRRERRR
RAADPAEDNQAPHAHSSPLARKHTVFASRRPKDDSWLVETVGLSWTGHAS
IAGKSDDSGLMRRTQSNPSSLQRNENTARLAFSIANMRRRHTIEAAVPEA
GDDEKDVGGLVFLRKDGAGTQREGAANAARKEKRRRAPSSRIFAGEEPAA
AAWGHADPAAVAAALPEKTTGRATVTLHTTVLPLRHRQREVAVPLLRRTL
SRSASIVWCNHRRRDFPHRCRRRL*
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mRNA from alignment at P-wetherbeei_contig1141:1610..3089-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1141.1.1 ID=mRNA_P-wetherbeei_contig1141.1.1|Name=mRNA_P-wetherbeei_contig1141.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1480bp|location=Sequence derived from alignment at P-wetherbeei_contig1141:1610..3089- (Phaeothamnion wetherbeei SAG_119_79)
GCTTGATGTGGGTCGCTGCGTGCAAAAGGGACAAATAGGCCGGCGCTATC
AGGCCTGTTAATGCGCAGGTGAGGAAGAAGGAAAAGGAAGAGGAAAAGAA
ACTCAAAGAGAACTTTGAGTGCAGGCGTATTTGTTATTTGTTCTCCGTGA
AGGTTTTTTCCAGCTATAACAAGTACTTCGCTCTAAGTTATTTAACCAGA
GTCGGGCAACGTCATCCTTCTCTCCTTAACTCGCTCCATTTCGAGTGTTT
CCGAAGCAATTCCATACTCATCACACGTCCCACGGTCACAGAGGCGGTCA
ATTCGCAGGTTCTTTATAAGTTGAAGCCGCTTATTTTTGACCCCTCCCCC
CTCCGTCACTTGCAAGCAGGTGCTGGCCAAAGGGGGCAAGGGAAAATGTC
CTCCCAGACATTGAGAGATTTGCGATCGCGCTGCGGCGGACGAAGTGGAG
CGCCTTCCTTCCAATATGGCAGCTGCATGGACAAGAGGAGGCAAGTCTTC
GTGACGGAACTCCTGCTCGGCCCGCGCCGGCGCGAACGACGGCGACGGGC
CGCCGATCCTGCCGAGGACAACCAGGCACCTCATGCGCATTCTTCTCCTC
TAGCGAGAAAACACACTGTTTTTGCAAGCCGGCGGCCCAAGGACGACTCT
TGGCTCGTGGAGACCGTTGGTCTTTCTTGGACTGGGCATGCTTCCATCGC
TGGAAAATCAGACGATTCTGGGCTAATGAGGAGGACGCAGAGCAACCCAT
CAAGCCTCCAGCGCAACGAAAACACCGCCAGGTTGGCGTTCTCCATCGCC
AACATGCGGCGGCGGCACACAATAGAGGCAGCTGTACCCGAAGCGGGGGA
TGACGAGAAGGACGTGGGCGGCCTTGTTTTCCTTCGGAAGGACGGAGCAG
GTACGCAGCGTGAAGGAGCGGCCAACGCGGCGAGGAAGGAAAAGCGTAGA
AGGGCGCCTTCTTCGAGAATCTTCGCGGGTGAAGAACCGGCCGCCGCCGC
GTGGGGTCACGCTGACCCAGCGGCAGTGGCGGCGGCGCTGCCAGAACATG
ATGGGGATCATCAAAACCACCGGCCGTGCAACGGTTACCCTGCACACAAC
GGTGCTGCCGCTAAGGCATCGGCAGCGGGAAGTAGCAGTGCCATTGCTAC
GCCGCACTTTGTCGAGGTCAGCCTCGATCGTCTGGTGCAACCACCGTCGG
CGCGATTTCCCGCACCGCTGCCGTCGCCGGCTTTGAAGCCTCAGCAGCGC
CTCGTTGCCGTAGTCGTTATGCCGTCTATGCCTGCCGTGCTCGGAAAAGG
CAACGATGCAGCAGCAGCAGAGGCGGCGGCAGATGCGGGGCCGGCAGTGG
GGCCTGCCAGCGAGGACTACCTCGCGGTAGCTGGTCGCACATTGAAAGGC
GACGAAGACCGCTTTTGCTACGCACCGCCCCACGTGCCCGTAGTGATTAC
GGACGCCGTTCGTCGAGAGCTGGCGAACCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1141:1610..3089-

>mRNA_P-wetherbeei_contig1141.1.1 ID=mRNA_P-wetherbeei_contig1141.1.1|Name=mRNA_P-wetherbeei_contig1141.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=825bp|location=Sequence derived from alignment at P-wetherbeei_contig1141:1610..3089- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCTCCCAGACATTGAGAGATTTGCGATCGCGCTGCGGCGGACGAAG
TGGAGCGCCTTCCTTCCAATATGGCAGCTGCATGGACAAGAGGAGGCAAG
TCTTCGTGACGGAACTCCTGCTCGGCCCGCGCCGGCGCGAACGACGGCGA
CGGGCCGCCGATCCTGCCGAGGACAACCAGGCACCTCATGCGCATTCTTC
TCCTCTAGCGAGAAAACACACTGTTTTTGCAAGCCGGCGGCCCAAGGACG
ACTCTTGGCTCGTGGAGACCGTTGGTCTTTCTTGGACTGGGCATGCTTCC
ATCGCTGGAAAATCAGACGATTCTGGGCTAATGAGGAGGACGCAGAGCAA
CCCATCAAGCCTCCAGCGCAACGAAAACACCGCCAGGTTGGCGTTCTCCA
TCGCCAACATGCGGCGGCGGCACACAATAGAGGCAGCTGTACCCGAAGCG
GGGGATGACGAGAAGGACGTGGGCGGCCTTGTTTTCCTTCGGAAGGACGG
AGCAGGTACGCAGCGTGAAGGAGCGGCCAACGCGGCGAGGAAGGAAAAGC
GTAGAAGGGCGCCTTCTTCGAGAATCTTCGCGGGTGAAGAACCGGCCGCC
GCCGCGTGGGGTCACGCTGACCCAGCGGCAGTGGCGGCGGCGCTGCCAGA
AAAAACCACCGGCCGTGCAACGGTTACCCTGCACACAACGGTGCTGCCGC
TAAGGCATCGGCAGCGGGAAGTAGCAGTGCCATTGCTACGCCGCACTTTG
TCGAGGTCAGCCTCGATCGTCTGGTGCAACCACCGTCGGCGCGATTTCCC
GCACCGCTGCCGTCGCCGGCTTTGA
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