mRNA_P-wetherbeei_contig11277.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11277.1.1
Unique NamemRNA_P-wetherbeei_contig11277.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11277.1.1 vs. uniprot
Match: D8LF60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF60_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 5.380e-20
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:  256 DGVLLAAQFALGVSLFAYTNLDFDSAFQLDCLRSVPALHTDAECSAYIRSDRYAAMLLVWRSFTSLSVESATYYSLANGLENS--CCGFGPPMRCT 537
            D  L   Q  LG ++++ T  ++D +FQLDCL   P +++  +C  YIRSDRYA M+LVWRS+  LS++   YY     +E    CCGFGPP RCT
Sbjct:    6 DFFLAGIQLTLGGTMYSRTLPEYDESFQLDCLLKEPVVNSPDDCLGYIRSDRYAGMMLVWRSYVYLSLDYTKYYQRLVTIEQDGVCCGFGPPTRCT 101
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BLAST of mRNA_P-wetherbeei_contig11277.1.1 vs. uniprot
Match: A0A835Z288_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z288_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.190e-10
Identity = 42/90 (46.67%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:  277 QFALGVSLFAYTNLDFDSAFQLDCL--RSVPALHTDAECSAYIRSDRYAAMLLVWRSFTSLSVESATYYSLANGLENS--CCGFGPPMRC 534
            Q A G++L ++   D   A Q  CL  RS  A  T A C+AY RS+RYA ML VWRS+  LS  ++ YY+LA  +E    CCGFG P  C
Sbjct:    2 QIASGLALRSHIAPDVPYAQQRSCLLARSATAPPTTA-CAAYARSERYARMLDVWRSYNYLSAGASRYYALAAHMEEDGDCCGFGAPRGC 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11277.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF60_ECTSI5.380e-2045.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z288_9STRA1.190e-1046.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11277contigP-wetherbeei_contig11277:327..863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LF60
PFAMsTetraspannin
Model size537
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue8.83e-21
EggNOG OGs2CYC1@1|root,2S3GC@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_001800.1
Cds size537
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185905.096889-CDS-P-wetherbeei_contig11277:326..8631683185905.096889-CDS-P-wetherbeei_contig11277:326..863Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11277 327..863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11277.1.1prot_P-wetherbeei_contig11277.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11277 327..863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11277.1.1

>prot_P-wetherbeei_contig11277.1.1 ID=prot_P-wetherbeei_contig11277.1.1|Name=mRNA_P-wetherbeei_contig11277.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
MCKPENLNIVASALLVARVVISSYLLVEGSILAANVHLAQAFGSGVAAIG
GCLIVVGIFGVCSAAINKIGSLKHNKFVLCIYLCCDGVLLAAQFALGVSL
FAYTNLDFDSAFQLDCLRSVPALHTDAECSAYIRSDRYAAMLLVWRSFTS
LSVESATYYSLANGLENSCCGFGPPMRCT
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mRNA from alignment at P-wetherbeei_contig11277:327..863-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11277.1.1 ID=mRNA_P-wetherbeei_contig11277.1.1|Name=mRNA_P-wetherbeei_contig11277.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig11277:327..863- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCAAGCCAGAGAACCTAAACATCGTCGCTTCCGCACTTTTGGTCGC
GAGAGTCGTAATCAGCTCCTATCTTCTTGTCGAAGGGTCCATACTTGCGG
CCAACGTCCACCTTGCGCAAGCCTTTGGCTCTGGAGTGGCTGCAATAGGA
GGCTGCCTCATTGTGGTTGGCATTTTTGGTGTTTGCTCGGCGGCCATCAA
CAAGATCGGCAGCCTGAAGCACAACAAGTTTGTCTTGTGCATCTACCTCT
GCTGCGATGGCGTGCTCCTCGCCGCCCAGTTCGCCCTCGGTGTCAGTCTT
TTTGCCTACACTAACCTGGACTTCGATTCGGCCTTCCAGTTGGACTGCCT
GCGGAGCGTCCCGGCGCTGCACACGGACGCGGAATGCTCCGCCTACATTC
GCTCGGACCGCTACGCCGCCATGCTGCTCGTGTGGCGCTCCTTCACATCC
CTCTCCGTGGAAAGCGCCACGTACTACTCGCTGGCCAACGGCCTCGAAAA
CAGTTGCTGCGGTTTTGGCCCGCCTATGCGCTGCACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11277:327..863-

>mRNA_P-wetherbeei_contig11277.1.1 ID=mRNA_P-wetherbeei_contig11277.1.1|Name=mRNA_P-wetherbeei_contig11277.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig11277:327..863- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCAAGCCAGAGAACCTAAACATCGTCGCTTCCGCACTTTTGGTCGC
GAGAGTCGTAATCAGCTCCTATCTTCTTGTCGAAGGGTCCATACTTGCGG
CCAACGTCCACCTTGCGCAAGCCTTTGGCTCTGGAGTGGCTGCAATAGGA
GGCTGCCTCATTGTGGTTGGCATTTTTGGTGTTTGCTCGGCGGCCATCAA
CAAGATCGGCAGCCTGAAGCACAACAAGTTTGTCTTGTGCATCTACCTCT
GCTGCGATGGCGTGCTCCTCGCCGCCCAGTTCGCCCTCGGTGTCAGTCTT
TTTGCCTACACTAACCTGGACTTCGATTCGGCCTTCCAGTTGGACTGCCT
GCGGAGCGTCCCGGCGCTGCACACGGACGCGGAATGCTCCGCCTACATTC
GCTCGGACCGCTACGCCGCCATGCTGCTCGTGTGGCGCTCCTTCACATCC
CTCTCCGTGGAAAGCGCCACGTACTACTCGCTGGCCAACGGCCTCGAAAA
CAGTTGCTGCGGTTTTGGCCCGCCTATGCGCTGCACG
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