mRNA_P-wetherbeei_contig11265.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11265.1.1
Unique NamemRNA_P-wetherbeei_contig11265.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11265.1.1 vs. uniprot
Match: A0A7S1XLN8_9STRA (Kinetochore protein SPC25 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLN8_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 7.630e-22
Identity = 55/114 (48.25%), Postives = 75/114 (65.79%), Query Frame = 1
Query:  436 LDEKQREEATRRRRKEQEINDLTRGVVFFKYLGLEFEHAGTGGEDEEAFLRLIFTQIDPEDPNRRFAFTVRVDASDAYHVANAAPPVPEEVVAPLLAELNATNDFSGFVRAMRR 777
            L+E +R  A   R +  E N+LTRGV+ +K LGL+FE A     D+   LRLIFTQ+DP +P R F+F V VD +  YHV+  +PP+P +V+ P+LA LNA N+F  FV  +RR
Sbjct:    1 LEELRRALAEAERARAAEHNELTRGVLLYKRLGLDFERA----HDDR--LRLIFTQLDPREPLRPFSFCVHVDDNSTYHVSECSPPLPADVIDPMLAALNAQNNFGAFVCGLRR 108          
BLAST of mRNA_P-wetherbeei_contig11265.1.1 vs. uniprot
Match: W7TNF4_9STRA (Kinetochore protein SPC25 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNF4_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.310e-18
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  490 INDLTRGVVFFKYLGLEFEHAGTGGEDEEAFLRLIFTQIDPEDPNRRFAFTVRVDASDAYHVANAAPPVPEEVVAPLLAELNATNDFSGFVRAMRRFFVST 792
            INDLTRGVV +K+LGL+FE A      ++  LRLIFTQ+D  +P+R + F+V +D +D Y V    P +   +V  L+AELN  NDF+ FV+ MRR F +T
Sbjct:  148 INDLTRGVVMYKHLGLDFERA------DDNKLRLIFTQLDATNPSREYFFSVHIDEADRYRVEECDPTLDTAMVDGLVAELNQANDFAVFVKKMRRAFKAT 242          
BLAST of mRNA_P-wetherbeei_contig11265.1.1 vs. uniprot
Match: A0A7S1G7N0_9STRA (Kinetochore protein SPC25 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G7N0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.350e-17
Identity = 65/148 (43.92%), Postives = 85/148 (57.43%), Query Frame = 1
Query:  370 EREVLPVKLRELQALRT-----ELERQLDEKQREEATRRRRKEQEINDLTRGVVFFKYLGLEFEHAGTGGEDEEAFLRLIFTQIDPEDPNRRFAFTVRVDASDAYHVANAAPPVPEEVVAPLLAELNATNDFSGFVRAMRRFFVSTTA 798
            +R+ LP    E++AL T     E ER+L EK    A++R      +++LT+GV F+K LGL+F+  G      E  LRL FTQIDP  P+R F FTV V   + Y V + +PPV    V  +  ELN TNDFS FVR MRR F +  A
Sbjct:   64 DRDALPT---EIEALHTATEAAEAERELVEKS--VASKRAEATYAVDELTKGVAFYKRLGLDFDGLG------EDVLRLTFTQIDPAAPDREFTFTVNVTDDNVYVVRDVSPPVAG--VEEMCEELNETNDFSFFVRRMRREFCALVA 198          
BLAST of mRNA_P-wetherbeei_contig11265.1.1 vs. uniprot
Match: A0A2R5G4Q6_9STRA (Kinetochore protein SPC25 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G4Q6_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 7.740e-17
Identity = 55/128 (42.97%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  415 RTELERQLDEKQREEATRRRRKEQEINDLTRGVVFFKYLGLEFEHAGTGGEDEEAFLRLIFTQIDPEDPNRRFAFTVRVDASDAYHVANAAPPVPEEVVAPLLAELNATNDFSGFVRAMRRFFVSTTA 798
            RTEL   L  K+ +    R  ++  +  LTRG   +K LGLEF+       D+   LRL FTQIDP DP+R F F + VD  D YHV    P V    ++ L+  +NATNDFS FVR+MR  F +  A
Sbjct:  119 RTELLGTLGAKEADIEAERETQQHRVAQLTRGATLYKKLGLEFQR------DDNTRLRLSFTQIDPRDPDREFFFVIFVDKDDCYHVEQVEPAVGS--ISDLIRRVNATNDFSSFVRSMRTKFQALCA 238          
BLAST of mRNA_P-wetherbeei_contig11265.1.1 vs. uniprot
Match: A0A7S2C3P1_9STRA (Kinetochore protein SPC25 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3P1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.630e-15
Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  490 INDLTRGVVFFKYLGLEFEHAGTGGEDEEAFLRLIFTQIDPEDPNRRFAFTVRVDASDAYHVANAAPPVPEEVVAPLLAELNATNDFSGFVRAMRRFF 783
            + +LTRGV+ +K LGLEFE A       E +L + FTQIDP D NR F F + V + D+Y V    P +    +  L+AE+N TNDF  FVR MR+ F
Sbjct:   68 MKELTRGVLMYKCLGLEFERAN------EDWLCVRFTQIDPADHNREFIFWISVGSDDSYQVQGCTPEINAGRLGGLVAEVNQTNDFGRFVRQMRKAF 159          
BLAST of mRNA_P-wetherbeei_contig11265.1.1 vs. uniprot
Match: A0A7S0HCM2_9EUKA (Kinetochore protein SPC25 n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HCM2_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 3.640e-14
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  481 EQEINDLTRG-VVFFKYLGLEFEHAGTGGEDEEAFLRLIFTQIDPEDPNRRFAFTVRVDASDAYHVANAAPPVPEEVVAPLLAELNATNDFSGFVRAMRRFF 783
            EQ++++L +G  ++ K+LGLEFE      EDE   LR++FT +DP+ P R F F V VD+SD YHV    P V +  V  L+  LN +NDFS FVR MR+ F
Sbjct:  130 EQKLSELQKGGSMYKKWLGLEFERV----EDER--LRIVFTHVDPQAPTRAFTFYVYVDSSDRYHVVKCEPEVHD--VQSLVDALNTSNDFSAFVRNMRKRF 223          
BLAST of mRNA_P-wetherbeei_contig11265.1.1 vs. uniprot
Match: A0A7R9WR30_9STRA (Kinetochore protein SPC25 n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WR30_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.080e-13
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  469 RRRKEQEINDLTRGVVFFKYLGLEFEHAGTGGEDEEAFLRLIFTQIDPEDPNRRFAFTVRV-DASDAYHVANAAPPVPEEVVAPLLAELNATNDFSGFVRAMRRFFVST 792
            R  K+  ++DLTRG+V +KYLG +FE       +E   LR+ FTQ+DP  PNR F+F + V DA + Y++    P +    V  +L E+N ++D +  +R MR+ FV T
Sbjct:   49 REAKQTTVDDLTRGLVNYKYLGFDFEKC-----EETNALRIAFTQLDPAFPNREFSFILLVNDADNQYYIHGCQPNLDATAVTKILKEINRSDDVALMIRQMRKEFVRT 152          
BLAST of mRNA_P-wetherbeei_contig11265.1.1 vs. uniprot
Match: B7FVW8_PHATC (Kinetochore protein SPC25 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVW8_PHATC)

HSP 1 Score: 79.0 bits (193), Expect = 2.600e-13
Identity = 41/107 (38.32%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  478 KEQEINDLTRGVVFFKYLGLEFEHAGTGGEDEEAFLRLIFTQIDPEDPNRRFAFTVRVD-ASDAYHVANAAPPVPEEVVAPLLAELNATNDFSGFVRAMRRFFVSTT 795
            K+  + DLT+G+V ++YLG++F+ A      ++  ++  FTQ+DP  P R+F+F ++VD   D Y V    PP+PE ++  LL++LNA +D   FV  MR  F + T
Sbjct:  148 KQTTLEDLTKGIVNYQYLGIDFQKA------QDNHMKFYFTQLDPTQPKRQFSFLLQVDDVDDQYIVDVCDPPIPEHILNELLSDLNADDDMLPFVIGMRHAFKAHT 248          
BLAST of mRNA_P-wetherbeei_contig11265.1.1 vs. uniprot
Match: A0A7R9WSN0_9STRA (Kinetochore protein SPC25 n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WSN0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 6.570e-13
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  469 RRRKEQEINDLTRGVVFFKYLGLEFEHAGTGGEDEEAFLRLIFTQIDPEDPNRRFAFTVRV-DASDAYHVANAAPPVPEEVVAPLLAELNATNDFSGFVRAMRRFFVST 792
            R  K+  ++DLTRG+V +KYLG +FE       +E   LR+ FTQ+DP  PNR F+F + V DA + Y++    P +    V  +L E+N ++D +  +R MR+ FV T
Sbjct:  142 REAKQTTVDDLTRGLVNYKYLGFDFEKC-----EETNALRIAFTQLDPAFPNREFSFILLVNDADNQYYIHGCQPNLDATAVTKILKEINRSDDVALMIRQMRKEFVRT 245          
BLAST of mRNA_P-wetherbeei_contig11265.1.1 vs. uniprot
Match: A0A482REE4_9ARCH (Spindle_Spc25 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482REE4_9ARCH)

HSP 1 Score: 73.6 bits (179), Expect = 2.180e-12
Identity = 42/104 (40.38%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  487 EINDLTRGVVFFKYLGLEFEHAGTGGEDEEAFLRLIFTQIDPEDPNRRFAFTVRVDASDAYHVANAAPPVPEEVVAPLLAELNATNDFSGFVRAMRRFFVSTTA 798
            ++ +LT+GV ++K LGL F+        E   +RL+FT IDP   ++ F F +R+ +++A+ V    PPV    ++ L+AELN TN+FS FV+ MR+ FV T A
Sbjct:   25 QMQELTKGVSYYKRLGLTFQTI------EHDRVRLVFTLIDPTAVDKPFFFDIRLASNEAFEVLEVQPPVSG--LSALVAELNETNNFSRFVQLMRQKFVETAA 120          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11265.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1XLN8_9STRA7.630e-2248.25Kinetochore protein SPC25 n=1 Tax=Phaeomonas parva... [more]
W7TNF4_9STRA1.310e-1848.51Kinetochore protein SPC25 n=2 Tax=Monodopsidaceae ... [more]
A0A7S1G7N0_9STRA3.350e-1743.92Kinetochore protein SPC25 n=1 Tax=Bicosoecida sp. ... [more]
A0A2R5G4Q6_9STRA7.740e-1742.97Kinetochore protein SPC25 n=1 Tax=Hondaea fermenta... [more]
A0A7S2C3P1_9STRA2.630e-1545.92Kinetochore protein SPC25 n=1 Tax=Florenciella par... [more]
A0A7S0HCM2_9EUKA3.640e-1447.06Kinetochore protein SPC25 n=1 Tax=Phaeocystis anta... [more]
A0A7R9WR30_9STRA1.080e-1339.45Kinetochore protein SPC25 n=1 Tax=Craspedostauros ... [more]
B7FVW8_PHATC2.600e-1338.32Kinetochore protein SPC25 n=1 Tax=Phaeodactylum tr... [more]
A0A7R9WSN0_9STRA6.570e-1339.45Kinetochore protein SPC25 n=1 Tax=Craspedostauros ... [more]
A0A482REE4_9ARCH2.180e-1240.38Spindle_Spc25 domain-containing protein n=1 Tax=ar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11265contigP-wetherbeei_contig11265:561..2028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G3J0
PFAMsSpindle_Spc25
Model size1013
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.04e-27
EggNOG OGs2E6HU@1|root,2SD7D@2759|Eukaryota
DescriptionChromosome segregation protein Spc25
Cds size852
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185904.7789845-UTR-P-wetherbeei_contig11265:560..6021683185904.7789845-UTR-P-wetherbeei_contig11265:560..602Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11265 561..602 +
1683185904.8141603-UTR-P-wetherbeei_contig11265:1909..20281683185904.8141603-UTR-P-wetherbeei_contig11265:1909..2028Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11265 1910..2028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185904.7892702-CDS-P-wetherbeei_contig11265:602..7641683185904.7892702-CDS-P-wetherbeei_contig11265:602..764Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11265 603..764 +
1683185904.799644-CDS-P-wetherbeei_contig11265:889..10781683185904.799644-CDS-P-wetherbeei_contig11265:889..1078Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11265 890..1078 +
1683185904.8069239-CDS-P-wetherbeei_contig11265:1408..19091683185904.8069239-CDS-P-wetherbeei_contig11265:1408..1909Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11265 1409..1909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11265.1.1prot_P-wetherbeei_contig11265.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11265 603..1909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11265.1.1

>prot_P-wetherbeei_contig11265.1.1 ID=prot_P-wetherbeei_contig11265.1.1|Name=mRNA_P-wetherbeei_contig11265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=284bp
MTSFTDAMAVVAAPSRPPASTVHLTADLQAELRQTRQAIEELVALERNKL
IELHANYVQQMGQSAAAITALRRSERDADRRKAEDDATAAAHAAQLEALK
EEVANLRQEEREVLPVKLRELQALRTELERQLDEKQREEATRRRRKEQEI
NDLTRGVVFFKYLGLEFEHAGTGGEDEEAFLRLIFTQIDPEDPNRRFAFT
VRVDASDAYHVANAAPPVPEEVVAPLLAELNATNDFSGFVRAMRRFFVST
TAFGDGGGGGDGGGDGGEGGGGGAGGGNGGEDM*
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mRNA from alignment at P-wetherbeei_contig11265:561..2028+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11265.1.1 ID=mRNA_P-wetherbeei_contig11265.1.1|Name=mRNA_P-wetherbeei_contig11265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1468bp|location=Sequence derived from alignment at P-wetherbeei_contig11265:561..2028+ (Phaeothamnion wetherbeei SAG_119_79)
TGTGATTCGAAAATCTCGTTTCGCACCCGTTATAGGAGACGAATGACGTC GTTCACCGATGCGATGGCGGTAGTGGCGGCGCCTTCACGGCCGCCGGCGT CCACGGTGCACCTCACAGCAGACCTCCAGGCCGAGCTCCGGCAAACCCGG CAAGCGATAGAGGAGCTCGTGGCACTGGAGCGCAACAAGCTCATCGAGCT CCACGTGAGCTCGCGTGGAGAAACCTTATCTGTTCTTGAGATTGTTCGTT TTGGCTGCCTAAAAGTTTGAAATCTGTCTCACCTCGCTCACTCTTCCCTT CGGCAAACACTCGTCCTGATGCTGTCCAGGCCAATTACGTGCAACAGATG GGGCAGAGCGCCGCCGCCATCACGGCATTACGGCGTTCCGAACGTGACGC GGACCGACGAAAAGCAGAAGACGACGCCACAGCGGCGGCGCACGCTGCAC AATTGGAGGCCTTGAAGGAAGAGGTCGCGAACCTGCGCCAAGAAGAGCGC GAGGTTCTTCCAGTAAAGGTGCGACTGCGGCAGCGGTTTCCCCCCGAAAT GCGCTTGCTCGTCTCATTTTGTTTTGAGGCGTCCGTGCTCGCATCACCGG TATTGCATGCGAGTTCACGCGGTCATGTCATCCGTGGCATGTTTCTCCAA CCGCGTTTTGTGAGTCCTGATAGGACGCGAGGAGCTGATTACGAATTTCT TTCACCCCGGCCGGTTCTGCTGTACCTCTCGTTCATCATAACCTCTCATG GTCTTCCCCAGTCTCGACCAATGCGACCTTTCATAGTTCTCATCTCAATT TCGCTCGACGCCGGCTCCTTTTCTCTCTTTCTTACTTCTTCCATCCAGCT GCGGGAGTTGCAGGCGCTACGGACGGAGCTGGAACGGCAGCTGGACGAAA AGCAGCGGGAGGAGGCCACGCGGCGACGCAGAAAGGAACAGGAGATCAAC GACCTGACGCGCGGCGTCGTCTTCTTCAAGTACCTCGGCCTAGAGTTCGA GCACGCCGGCACCGGCGGCGAAGACGAGGAGGCGTTCCTGCGGCTCATCT TCACGCAGATCGATCCTGAGGATCCCAACCGCCGCTTCGCGTTCACGGTG CGGGTAGACGCTTCGGACGCCTACCACGTCGCGAACGCTGCACCGCCAGT GCCGGAGGAGGTGGTGGCGCCGCTGCTGGCAGAGCTGAATGCCACAAACG ATTTCAGCGGTTTTGTGCGTGCCATGCGCCGCTTCTTCGTCTCGACGACG GCGTTCGGAGATGGCGGTGGCGGCGGAGACGGCGGTGGCGACGGCGGCGA AGGAGGAGGCGGGGGCGCTGGTGGTGGCAATGGCGGTGAGGATATGTGAA TGAATGCTGCGGCGTTGTGAGTGACACGGGTGATGACACCCACTGTAAAC CTACACTGTATGTATTTGAGGACCTTGGCTGTGGTTGTCATTGGGACTGG TACGCCTTGCGCTTTGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11265:561..2028+

>mRNA_P-wetherbeei_contig11265.1.1 ID=mRNA_P-wetherbeei_contig11265.1.1|Name=mRNA_P-wetherbeei_contig11265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=852bp|location=Sequence derived from alignment at P-wetherbeei_contig11265:561..2028+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGTCGTTCACCGATGCGATGGCGGTAGTGGCGGCGCCTTCACGGCC
GCCGGCGTCCACGGTGCACCTCACAGCAGACCTCCAGGCCGAGCTCCGGC
AAACCCGGCAAGCGATAGAGGAGCTCGTGGCACTGGAGCGCAACAAGCTC
ATCGAGCTCCACGCCAATTACGTGCAACAGATGGGGCAGAGCGCCGCCGC
CATCACGGCATTACGGCGTTCCGAACGTGACGCGGACCGACGAAAAGCAG
AAGACGACGCCACAGCGGCGGCGCACGCTGCACAATTGGAGGCCTTGAAG
GAAGAGGTCGCGAACCTGCGCCAAGAAGAGCGCGAGGTTCTTCCAGTAAA
GCTGCGGGAGTTGCAGGCGCTACGGACGGAGCTGGAACGGCAGCTGGACG
AAAAGCAGCGGGAGGAGGCCACGCGGCGACGCAGAAAGGAACAGGAGATC
AACGACCTGACGCGCGGCGTCGTCTTCTTCAAGTACCTCGGCCTAGAGTT
CGAGCACGCCGGCACCGGCGGCGAAGACGAGGAGGCGTTCCTGCGGCTCA
TCTTCACGCAGATCGATCCTGAGGATCCCAACCGCCGCTTCGCGTTCACG
GTGCGGGTAGACGCTTCGGACGCCTACCACGTCGCGAACGCTGCACCGCC
AGTGCCGGAGGAGGTGGTGGCGCCGCTGCTGGCAGAGCTGAATGCCACAA
ACGATTTCAGCGGTTTTGTGCGTGCCATGCGCCGCTTCTTCGTCTCGACG
ACGGCGTTCGGAGATGGCGGTGGCGGCGGAGACGGCGGTGGCGACGGCGG
CGAAGGAGGAGGCGGGGGCGCTGGTGGTGGCAATGGCGGTGAGGATATGT
GA
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