mRNA_P-wetherbeei_contig11257.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11257.2.1
Unique NamemRNA_P-wetherbeei_contig11257.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11257.2.1 vs. uniprot
Match: A0A351T5X3_9PROT (Thioesterase n=5 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T5X3_9PROT)

HSP 1 Score: 223 bits (567), Expect = 5.840e-72
Identity = 102/162 (62.96%), Postives = 129/162 (79.63%), Query Frame = 1
Query:   13 MFDDLPISWAEFRHRSGRAPNGHIGVMGELGAMIESLDPNGIRVRVPFQPVIIGDTEWNVVHSGLLMILLDSLCGISIIQKMTTPTPIATLDLRVDYLRAVPAGEDLYVTATCYKIGRNVGFSRGSIYTSDPGDPAAIANGSFMLGTAGDPPPMATMLKGQG 498
            M + LP+SWA+FR ++G+  +GH G++GELG +IESL  +G+R+R+P  P  +GD EW VVHSGLLMI+LD++CG++ IQK+  P PIATLDLRVDYLRAVPA +D+ VT  CYK+GRNVGF++G  YT D  DPAAIANG+FMLGTAGD PPMA  LK  G
Sbjct:    1 MNEQLPMSWADFRGQAGQLYDGHAGILGELGVVIESLAEDGLRIRLPQNPACVGDPEWQVVHSGLLMIMLDTVCGLATIQKLANPAPIATLDLRVDYLRAVPASQDVLVTGQCYKLGRNVGFAKGIAYTHDAEDPAAIANGTFMLGTAGDTPPMAAALKAAG 162          
BLAST of mRNA_P-wetherbeei_contig11257.2.1 vs. uniprot
Match: A0A3C0TWP1_9PROT (4HBT domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TWP1_9PROT)

HSP 1 Score: 200 bits (508), Expect = 1.060e-63
Identity = 95/112 (84.82%), Postives = 104/112 (92.86%), Query Frame = 1
Query:  166 IIGDTEWNVVHSGLLMILLDSLCGISIIQKMTTPTPIATLDLRVDYLRAVPAGEDLYVTATCYKIGRNVGFSRGSIYTSDPGDPAAIANGSFMLGTAGDPPPMATMLKGQGA 501
            ++GDT WNVVHSGLLM+LLDSLCGI+IIQKMT P PIATLDLRVDYLRAVPAGEDL+VTATCYK+GRNVGF+ GSIYT+DP DPAAIANGSFMLGTAGDPPPMA ML+G  A
Sbjct:    1 MVGDTRWNVVHSGLLMLLLDSLCGIAIIQKMTVPMPIATLDLRVDYLRAVPAGEDLFVTATCYKLGRNVGFASGSIYTADPEDPAAIANGSFMLGTAGDPPPMAAMLRGGAA 112          
BLAST of mRNA_P-wetherbeei_contig11257.2.1 vs. uniprot
Match: A0A2E9Y0F6_9PROT (Thioesterase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E9Y0F6_9PROT)

HSP 1 Score: 114 bits (286), Expect = 2.350e-29
Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = 1
Query:   91 MGELGAMIESLDPNGIRVRVPFQPVIIGDTEWNVVHSGLLMILLDSLCGISIIQKMTTPTPIATLDLRVDYLRAVPAGEDLYVTATCYKIGRNVGFSRGSIYTSDPGDPAAIANGSFML 447
            M  +G  + S+D +G+  ++P +P  +GD +  VVH G++ +LLDSL G+ ++ K+   T +ATLDLR+DYL+   +G+DL+  A CYK  RN+ F+R   Y  D  DP A A+GSFM+
Sbjct:   33 MSAVGLDLISMDDSGVVAKIPHRPEFVGDPDTGVVHGGIVTVLLDSLSGMCVVPKLPDGTMVATLDLRIDYLKPAVSGQDLHAYAHCYKTTRNIAFTRAIAYQGDVDDPIAHASGSFMM 151          
BLAST of mRNA_P-wetherbeei_contig11257.2.1 vs. uniprot
Match: A0A3C0TWM8_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TWM8_9PROT)

HSP 1 Score: 109 bits (273), Expect = 1.470e-28
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 1
Query:    1 QVTEMFDDLPISWAEFRHRSGRAPNGHIGVMGELGAMIESLDPNGIRVRVPFQPVIIGDTE 183
            QVTE+FDDLPISWAEFR RSGR P GH GVMGEL AMIESLDPNG+RVR+PF PV++GDT 
Sbjct:    7 QVTEIFDDLPISWAEFRRRSGRDPEGHTGVMGELNAMIESLDPNGLRVRLPFNPVMVGDTR 67          
BLAST of mRNA_P-wetherbeei_contig11257.2.1 vs. uniprot
Match: A0A1R4FC92_BREDI (4HBT domain-containing protein n=7 Tax=Brevundimonas TaxID=41275 RepID=A0A1R4FC92_BREDI)

HSP 1 Score: 107 bits (268), Expect = 7.940e-27
Identity = 51/121 (42.15%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  100 LGAMIESLDPNGIRVRVPFQPVIIGDTEWNVVHSGLLMILLDSLCGISIIQKMTTPTPIATLDLRVDYLRAVPAGEDLYVTATCYKIGRNVGFSRGSIYTSDPGDPAAIANGSFMLGTAGD 462
            LG   E LD + +R+RVP++  ++GD E  V+  GL+  LLD + G+++   + T  P+ATLDLRVDY+RA   G DL   A CY++ RN+ F R   +  DP DP A A  ++M+   GD
Sbjct:   14 LGFAFEGLDGDRVRIRVPYRDDLVGDPETGVLAGGLVTTLLDHVGGLAVWVGLGTFRPVATLDLRVDYMRAAAPGRDLLAEARCYRLTRNLAFVRAWAFEDDPADPVAAAQSAYMVSAEGD 134          
BLAST of mRNA_P-wetherbeei_contig11257.2.1 vs. uniprot
Match: A0A2S8W787_9CAUL (Thioesterase n=4 Tax=Brevundimonas TaxID=41275 RepID=A0A2S8W787_9CAUL)

HSP 1 Score: 108 bits (269), Expect = 8.040e-27
Identity = 51/121 (42.15%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  100 LGAMIESLDPNGIRVRVPFQPVIIGDTEWNVVHSGLLMILLDSLCGISIIQKMTTPTPIATLDLRVDYLRAVPAGEDLYVTATCYKIGRNVGFSRGSIYTSDPGDPAAIANGSFMLGTAGD 462
            LG + E LD + +R+RVP++  ++GD E  V+  GL+  LLD + G+++   + T  PIATLDLRVDY+RA   G DL   A CY++ R++GF R   +  DP DP A A  ++++   GD
Sbjct:   23 LGFLYEGLDGDRVRLRVPYRDDLVGDPETGVLAGGLVTTLLDHVGGLAVWVGLKTYQPIATLDLRVDYMRAAIPGRDLIAEARCYRLTRSIGFVRAWAFEDDPADPVAAAQSAYVISAEGD 143          
BLAST of mRNA_P-wetherbeei_contig11257.2.1 vs. uniprot
Match: A0A7Y8MU42_9PROT (PaaI family thioesterase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y8MU42_9PROT)

HSP 1 Score: 106 bits (265), Expect = 2.650e-26
Identity = 50/114 (43.86%), Postives = 67/114 (58.77%), Query Frame = 1
Query:  121 LDPNGIRVRVPFQPVIIGDTEWNVVHSGLLMILLDSLCGISIIQKMTTPTPIATLDLRVDYLRAVPAGEDLYVTATCYKIGRNVGFSRGSIYTSDPGDPAAIANGSFMLGTAGD 462
            + P  +   VPF P  +G+ E  VVH G++  LLD+ CGI++  +      IATLDLR+DY++   AG D+Y  A CYK+ RN+ F RG  Y  D  DP A    +FMLGT  D
Sbjct:   29 IKPGEVVCTVPFDPRFVGNPETGVVHGGIVTALLDNACGIAVSSRTRQFGQIATLDLRIDYMKPANAGADIYAFAECYKVTRNIAFVRGIAYHDDRSDPIATCAAAFMLGTKSD 142          
BLAST of mRNA_P-wetherbeei_contig11257.2.1 vs. uniprot
Match: UPI001FA6E185 (PaaI family thioesterase n=1 Tax=Caulobacter sp. CCUG 60055 TaxID=2100090 RepID=UPI001FA6E185)

HSP 1 Score: 106 bits (265), Expect = 3.480e-26
Identity = 49/116 (42.24%), Postives = 74/116 (63.79%), Query Frame = 1
Query:  100 LGAMIESLDPNGIRVRVPFQPVIIGDTEWNVVHSGLLMILLDSLCGISIIQKMTTPTPIATLDLRVDYLRAVPAGEDLYVTATCYKIGRNVGFSRGSIYTSDPGDPAAIANGSFML 447
            LG  + S+D N   ++VP++  ++GD +  V   G++  LLD +CG++++  M   T  ATLDLR+DY+RA   G+ ++ TA CYK+ R+V F R S Y +DP DP A A  +FML
Sbjct:   24 LGMELVSVDANTGTLKVPYREDLVGDPDTGVFAGGVVTALLDQVCGLAVMASMEEFTSTATLDLRIDYMRAAQPGKAVFATAHCYKVTRSVAFVRASAYDADPADPVATAQAAFML 139          
BLAST of mRNA_P-wetherbeei_contig11257.2.1 vs. uniprot
Match: UPI001D14AC2D (PaaI family thioesterase n=1 Tax=Sneathiella sp. HT1-7 TaxID=2887192 RepID=UPI001D14AC2D)

HSP 1 Score: 105 bits (262), Expect = 8.590e-26
Identity = 52/135 (38.52%), Postives = 79/135 (58.52%), Query Frame = 1
Query:   97 ELGAMIESLDPNGIRVRVPFQPVIIGDTEWNVVHSGLLMILLDSLCGISIIQKMTTPTPIATLDLRVDYLRAVPAGEDLYVTATCYKIGRNVGFSRGSIYTSDPGDPAAIANGSFMLGTAGDPPPMATMLKGQGA 501
            E+G  +  ++ +G+   +P+Q    G+    V+H G++  L+DS  G+ I  K+    P+ATLDLR+DYL     GED++  ATCYK+ + + F R   Y SDP DP A + G+FML +  D PP+    K +GA
Sbjct:   23 EIGLKVHEMNEDGVVFSLPYQERFAGNPVNGVLHGGIITTLIDSAAGMCIYAKIKEYIPLATLDLRIDYLNPATPGEDVFTRATCYKVTKQIAFVRAIAYHSDPEDPIANSVGTFMLRST-DTPPLNYSAKRKGA 156          
BLAST of mRNA_P-wetherbeei_contig11257.2.1 vs. uniprot
Match: A0A7L5C0C7_9RHOB (PaaI family thioesterase n=1 Tax=Pikeienuella piscinae TaxID=2748098 RepID=A0A7L5C0C7_9RHOB)

HSP 1 Score: 105 bits (261), Expect = 8.980e-26
Identity = 50/116 (43.10%), Postives = 70/116 (60.34%), Query Frame = 1
Query:  100 LGAMIESLDPNGIRVRVPFQPVIIGDTEWNVVHSGLLMILLDSLCGISIIQKMTTPTPIATLDLRVDYLRAVPAGEDLYVTATCYKIGRNVGFSRGSIYTSDPGDPAAIANGSFML 447
            LG  +E     G+ VRVP+   +IGD    V+H G++  LLD+ CGI+ + KM     +ATLDLR+DY+R    G+ +     CY++ R+V F RG  Y SDP DP A A G+FM+
Sbjct:   25 LGLRLEPQKDGGLHVRVPYDERLIGDPATGVIHGGVVTTLLDTGCGIAAMLKMGGKAGVATLDLRIDYMRPSKPGKAILGACECYRLTRSVAFCRGVAYDSDPDDPVATAAGAFMI 140          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11257.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351T5X3_9PROT5.840e-7262.96Thioesterase n=5 Tax=Alphaproteobacteria bacterium... [more]
A0A3C0TWP1_9PROT1.060e-6384.824HBT domain-containing protein n=1 Tax=Alphaproteo... [more]
A0A2E9Y0F6_9PROT2.350e-2942.86Thioesterase n=1 Tax=Rhodospirillaceae bacterium T... [more]
A0A3C0TWM8_9PROT1.470e-2880.33Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A1R4FC92_BREDI7.940e-2742.154HBT domain-containing protein n=7 Tax=Brevundimon... [more]
A0A2S8W787_9CAUL8.040e-2742.15Thioesterase n=4 Tax=Brevundimonas TaxID=41275 Rep... [more]
A0A7Y8MU42_9PROT2.650e-2643.86PaaI family thioesterase n=1 Tax=Alphaproteobacter... [more]
UPI001FA6E1853.480e-2642.24PaaI family thioesterase n=1 Tax=Caulobacter sp. C... [more]
UPI001D14AC2D8.590e-2638.52PaaI family thioesterase n=1 Tax=Sneathiella sp. H... [more]
A0A7L5C0C7_9RHOB8.980e-2643.10PaaI family thioesterase n=1 Tax=Pikeienuella pisc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11257contigP-wetherbeei_contig11257:770..1273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1122604.JONR01000002_gene1589
PFAMs4HBT
Model size504
Max annot lvl135614|Xanthomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.52e-26
EggNOG OGsCOG2050@1|root,COG2050@2|Bacteria,1RHK6@1224|Proteobacteria,1SE50@1236|Gammaproteobacteria,1X8XU@135614|Xanthomonadales
DescriptionThioesterase superfamily
Cds size492
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185904.3167024-CDS-P-wetherbeei_contig11257:769..12611683185904.3167024-CDS-P-wetherbeei_contig11257:769..1261Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11257 770..1261 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185904.325265-UTR-P-wetherbeei_contig11257:1261..12731683185904.325265-UTR-P-wetherbeei_contig11257:1261..1273Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11257 1262..1273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11257.2.1prot_P-wetherbeei_contig11257.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11257 770..1261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11257.2.1

>prot_P-wetherbeei_contig11257.2.1 ID=prot_P-wetherbeei_contig11257.2.1|Name=mRNA_P-wetherbeei_contig11257.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
MFDDLPISWAEFRHRSGRAPNGHIGVMGELGAMIESLDPNGIRVRVPFQP
VIIGDTEWNVVHSGLLMILLDSLCGISIIQKMTTPTPIATLDLRVDYLRA
VPAGEDLYVTATCYKIGRNVGFSRGSIYTSDPGDPAAIANGSFMLGTAGD
PPPMATMLKGQGA*
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mRNA from alignment at P-wetherbeei_contig11257:770..1273-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11257.2.1 ID=mRNA_P-wetherbeei_contig11257.2.1|Name=mRNA_P-wetherbeei_contig11257.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig11257:770..1273- (Phaeothamnion wetherbeei SAG_119_79)
CAAGTGACTGAAATGTTTGATGACCTGCCAATTTCATGGGCCGAATTCCG GCACCGTTCCGGGCGTGCCCCGAACGGGCATATCGGCGTTATGGGCGAAT TGGGCGCCATGATCGAAAGTCTGGACCCCAATGGGATCCGGGTACGGGTG CCGTTTCAGCCTGTGATTATCGGCGATACGGAATGGAATGTCGTGCATTC GGGTCTGCTGATGATTCTGCTCGATAGCCTGTGCGGGATTTCGATCATCC AGAAAATGACGACCCCCACACCCATCGCGACCCTTGATCTGCGGGTGGAT TATCTGCGCGCCGTGCCTGCTGGCGAAGATTTGTATGTCACGGCCACCTG TTACAAGATCGGTCGCAATGTGGGCTTTTCGCGGGGTTCCATTTACACCT CCGATCCCGGTGATCCGGCTGCCATCGCCAATGGTTCGTTCATGCTGGGC ACCGCTGGCGACCCGCCGCCCATGGCCACAATGCTGAAGGGGCAAGGCGC ATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11257:770..1273-

>mRNA_P-wetherbeei_contig11257.2.1 ID=mRNA_P-wetherbeei_contig11257.2.1|Name=mRNA_P-wetherbeei_contig11257.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig11257:770..1273- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGATGACCTGCCAATTTCATGGGCCGAATTCCGGCACCGTTCCGG
GCGTGCCCCGAACGGGCATATCGGCGTTATGGGCGAATTGGGCGCCATGA
TCGAAAGTCTGGACCCCAATGGGATCCGGGTACGGGTGCCGTTTCAGCCT
GTGATTATCGGCGATACGGAATGGAATGTCGTGCATTCGGGTCTGCTGAT
GATTCTGCTCGATAGCCTGTGCGGGATTTCGATCATCCAGAAAATGACGA
CCCCCACACCCATCGCGACCCTTGATCTGCGGGTGGATTATCTGCGCGCC
GTGCCTGCTGGCGAAGATTTGTATGTCACGGCCACCTGTTACAAGATCGG
TCGCAATGTGGGCTTTTCGCGGGGTTCCATTTACACCTCCGATCCCGGTG
ATCCGGCTGCCATCGCCAATGGTTCGTTCATGCTGGGCACCGCTGGCGAC
CCGCCGCCCATGGCCACAATGCTGAAGGGGCAAGGCGCATGA
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