mRNA_P-wetherbeei_contig1125.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1125.5.1
Unique NamemRNA_P-wetherbeei_contig1125.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1125.5.1 vs. uniprot
Match: A0A0B6D7L0_9GAMM (CobB/CobQ-like glutamine amidotransferase domain protein n=4 Tax=Francisella TaxID=262 RepID=A0A0B6D7L0_9GAMM)

HSP 1 Score: 79.7 bits (195), Expect = 1.140e-16
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 QEYPD-YAAFDGFIIPGSVSSANDNVDWQRRLCVEIQRLYRERRPLLGICFGHQIIAHALGGEVLR 195
            QEYP+ Y  +DGFII GS ++A DN+ W  +L  EI+RLY + R ++GICFGHQI+A ALGG V R
Sbjct:   48 QEYPENYDIYDGFIITGSKATAFDNLGWIIKLKAEIKRLYEQNRKIIGICFGHQILAQALGGRVER 113          
BLAST of mRNA_P-wetherbeei_contig1125.5.1 vs. uniprot
Match: A0A5C1SL61_9GAMM (Glutamine amidotransferase, class I n=1 Tax=Francisella orientalis TaxID=299583 RepID=A0A5C1SL61_9GAMM)

HSP 1 Score: 77.8 bits (190), Expect = 5.280e-16
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 QEYPD-YAAFDGFIIPGSVSSANDNVDWQRRLCVEIQRLYRERRPLLGICFGHQIIAHALGGEVLR 195
            QEYP+ Y  +DGFII GS ++A D++ W  +L  EI+RLY+  R ++GICFGHQI+A ALGG V R
Sbjct:   48 QEYPENYDIYDGFIITGSKATAFDDLGWIIKLKAEIKRLYKHNRKIIGICFGHQILAQALGGRVER 113          
BLAST of mRNA_P-wetherbeei_contig1125.5.1 vs. uniprot
Match: A0A1S7LM84_MAGMO (GATase domain-containing protein n=1 Tax=Magnetococcus massalia (strain MO-1) TaxID=451514 RepID=A0A1S7LM84_MAGMO)

HSP 1 Score: 75.5 bits (184), Expect = 5.020e-15
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    4 EYP-DYAAFDGFIIPGSVSSANDNVDWQRRLCVEIQRLYRERRPLLGICFGHQIIAHALGGEVLR 195
            E+P D AAFDG++I GS  SA D   W   L   IQ L+RE+RPL+GICFGHQIIA ALGG V++
Sbjct:   48 EFPTDRAAFDGYLIGGSADSAYDPAPWIAPLERFIQSLHREQRPLVGICFGHQIIAQALGGVVMK 112          
BLAST of mRNA_P-wetherbeei_contig1125.5.1 vs. uniprot
Match: A0A7L5CC66_9GAMM (Type 1 glutamine amidotransferase n=3 Tax=Francisella TaxID=262 RepID=A0A7L5CC66_9GAMM)

HSP 1 Score: 74.3 bits (181), Expect = 1.340e-14
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 QEYPD-YAAFDGFIIPGSVSSANDNVDWQRRLCVEIQRLYRERRPLLGICFGHQIIAHALGGEVLR 195
            QEYP+ Y  +DGFII GS ++A D + W  RL  EI +LY + + ++GICFGHQI+A ALGG V R
Sbjct:   48 QEYPENYDIYDGFIITGSKATAFDKLAWITRLKSEIVKLYNKNKKIIGICFGHQILAQALGGRVER 113          
BLAST of mRNA_P-wetherbeei_contig1125.5.1 vs. uniprot
Match: A0Q523_FRATN (CobB/CobQ-like glutamine amidotransferase domain protein n=9 Tax=Francisella TaxID=262 RepID=A0Q523_FRATN)

HSP 1 Score: 73.9 bits (180), Expect = 1.820e-14
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 QEYP-DYAAFDGFIIPGSVSSANDNVDWQRRLCVEIQRLYRERRPLLGICFGHQIIAHALGGEVLR 195
            QEYP DY  +DGFII GS ++A DN+ W  +L  EI +L+   + ++GICFGHQI+A ALGG V R
Sbjct:   48 QEYPQDYDIYDGFIITGSKATAFDNLAWIIKLKTEIVKLHDNHKKIIGICFGHQILAQALGGRVER 113          
BLAST of mRNA_P-wetherbeei_contig1125.5.1 vs. uniprot
Match: UPI000DA1AA33 (GMP synthase n=1 Tax=Salinicola halophilus TaxID=184065 RepID=UPI000DA1AA33)

HSP 1 Score: 72.8 bits (177), Expect = 5.300e-14
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   13 DYAAFDGFIIPGSVSSANDNVDWQRRLCVEIQRLYRERRPLLGICFGHQIIAHALGGEV 189
            D A  DG++I GS    ND   W  RL   ++ LY  RRPL+G+CFGHQ+IAHALGGEV
Sbjct:   54 DIATIDGWLITGSKHGVNDGHAWIERLSEFVRTLYAARRPLVGVCFGHQLIAHALGGEV 112          
BLAST of mRNA_P-wetherbeei_contig1125.5.1 vs. uniprot
Match: A0A6M3HUZ7_9GAMM (Type 1 glutamine amidotransferase n=2 Tax=Allofrancisella TaxID=1869285 RepID=A0A6M3HUZ7_9GAMM)

HSP 1 Score: 72.0 bits (175), Expect = 9.830e-14
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 QEYP-DYAAFDGFIIPGSVSSANDNVDWQRRLCVEIQRLYRERRPLLGICFGHQIIAHALGGEVLR 195
            Q+YP DY  +DGFII GS ++A DN+ W  +L   I  LY   + ++G+CFGHQI+A ALGG V R
Sbjct:   48 QDYPSDYDIYDGFIITGSKATAFDNLPWISKLKSTIVELYNSSKKIIGVCFGHQILAQALGGRVER 113          
BLAST of mRNA_P-wetherbeei_contig1125.5.1 vs. uniprot
Match: A0A3D1YN54_9GAMM (GMP synthase n=4 Tax=Proteobacteria TaxID=1224 RepID=A0A3D1YN54_9GAMM)

HSP 1 Score: 71.6 bits (174), Expect = 1.380e-13
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   13 DYAAFDGFIIPGSVSSANDNVDWQRRLCVEIQRLYRERRPLLGICFGHQIIAHALGGEVLR 195
            D  A DGFII GS SSA D+  W R L   IQ+L+ +R+ ++GICFGHQIIA ALGGEV +
Sbjct:   54 DIDAVDGFIITGSKSSAYDDKQWIRDLEALIQKLHAKRKKMVGICFGHQIIAKALGGEVSK 114          
BLAST of mRNA_P-wetherbeei_contig1125.5.1 vs. uniprot
Match: A0A1I2YMF8_9GAMM (GMP synthase-Glutamine amidotransferase n=2 Tax=Halomonas xianhensis TaxID=442341 RepID=A0A1I2YMF8_9GAMM)

HSP 1 Score: 71.6 bits (174), Expect = 1.490e-13
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   13 DYAAFDGFIIPGSVSSANDNVDWQRRLCVEIQRLYRERRPLLGICFGHQIIAHALGGEVLR 195
            D  A D ++I GS    ND  DW  RLC  ++ L+R  RPL+G+CFGHQ+IA ALGGEV++
Sbjct:   52 DTMAVDAWLITGSKFGVNDGSDWIDRLCSFVRELWRTGRPLVGVCFGHQLIAKALGGEVVK 112          
BLAST of mRNA_P-wetherbeei_contig1125.5.1 vs. uniprot
Match: A0A1Y5DX86_9GAMM (GMP synthase n=1 Tax=Marinomonas sp. 42_23_T18 TaxID=1856283 RepID=A0A1Y5DX86_9GAMM)

HSP 1 Score: 71.2 bits (173), Expect = 1.980e-13
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    4 EYPD-YAAFDGFIIPGSVSSANDNVDWQRRLCVEIQRLYRERRPLLGICFGHQIIAHALGGEVLR 195
            +YPD   AFDGF+  GS   A D++ W   L   +Q+LY+E+  L+GICFGHQIIA ALGG+V++
Sbjct:   48 QYPDDIHAFDGFVTTGSRHGAEDDLPWITELIGFVQKLYQEKVKLVGICFGHQIIAKALGGQVVK 112          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1125.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B6D7L0_9GAMM1.140e-1657.58CobB/CobQ-like glutamine amidotransferase domain p... [more]
A0A5C1SL61_9GAMM5.280e-1656.06Glutamine amidotransferase, class I n=1 Tax=Franci... [more]
A0A1S7LM84_MAGMO5.020e-1560.00GATase domain-containing protein n=1 Tax=Magnetoco... [more]
A0A7L5CC66_9GAMM1.340e-1454.55Type 1 glutamine amidotransferase n=3 Tax=Francise... [more]
A0Q523_FRATN1.820e-1454.55CobB/CobQ-like glutamine amidotransferase domain p... [more]
UPI000DA1AA335.300e-1455.93GMP synthase n=1 Tax=Salinicola halophilus TaxID=1... [more]
A0A6M3HUZ7_9GAMM9.830e-1451.52Type 1 glutamine amidotransferase n=2 Tax=Allofran... [more]
A0A3D1YN54_9GAMM1.380e-1359.02GMP synthase n=4 Tax=Proteobacteria TaxID=1224 Rep... [more]
A0A1I2YMF8_9GAMM1.490e-1352.46GMP synthase-Glutamine amidotransferase n=2 Tax=Ha... [more]
A0A1Y5DX86_9GAMM1.980e-1352.31GMP synthase n=1 Tax=Marinomonas sp. 42_23_T18 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1125contigP-wetherbeei_contig1125:7338..7671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog573569.F7308_0448
PFAMsGATase
Model size195
Max annot lvl72273|Thiotrichales
KEGG rclassRC00010,RC00204
KEGG koko:K01951
KEGG ReactionR01230,R01231,R08244
KEGG Pathwayko00230,ko00983,ko01100,map00230,map00983,map01100
KEGG ModuleM00050
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.69e-17
EggNOG OGsCOG0518@1|root,COG0518@2|Bacteria,1MV9U@1224|Proteobacteria,1S2MK@1236|Gammaproteobacteria,4613G@72273|Thiotrichales
EC6.3.5.2
DescriptionGlutamine amidotransferase class-I
Cds size195
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185904.1303608-CDS-P-wetherbeei_contig1125:7337..73731683185904.1303608-CDS-P-wetherbeei_contig1125:7337..7373Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1125 7338..7373 -
1683185904.1427963-CDS-P-wetherbeei_contig1125:7512..76711683185904.1427963-CDS-P-wetherbeei_contig1125:7512..7671Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1125 7513..7671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1125.5.1prot_P-wetherbeei_contig1125.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1125 7338..7671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1125.5.1

>prot_P-wetherbeei_contig1125.5.1 ID=prot_P-wetherbeei_contig1125.5.1|Name=mRNA_P-wetherbeei_contig1125.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
QEYPDYAAFDGFIIPGSVSSANDNVDWQRRLCVEIQRLYRERRPLLGICF
GHQIIAHALGGEVLR
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mRNA from alignment at P-wetherbeei_contig1125:7338..7671-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1125.5.1 ID=mRNA_P-wetherbeei_contig1125.5.1|Name=mRNA_P-wetherbeei_contig1125.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=334bp|location=Sequence derived from alignment at P-wetherbeei_contig1125:7338..7671- (Phaeothamnion wetherbeei SAG_119_79)
CAGGAGTATCCGGACTACGCCGCATTCGATGGCTTCATCATCCCGGGATC AGTGAGCAGCGCCAACGATAACGTCGACTGGCAGCGCCGCCTCTGCGTGG AGATCCAGCGGCTGTACCGGGAGCGCCGCCCGCTGCTGGGCATCTGCTTC GGCCACCAAGTGCGCCGGCTTGCCTCTTTGTCTCTTACTGTTTGCTACTC GGATGGAGCGGTTGCGCCTACGAGTTCACACAATGCGCTTGGAACAAATC CATTACTGCCCCATCGCCGCCGTCCTGCTCTCCGCACTGTTTCCACAGAT CATCGCGCATGCCCTCGGCGGCGAGGTGCTCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1125:7338..7671-

>mRNA_P-wetherbeei_contig1125.5.1 ID=mRNA_P-wetherbeei_contig1125.5.1|Name=mRNA_P-wetherbeei_contig1125.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig1125:7338..7671- (Phaeothamnion wetherbeei SAG_119_79)
CAGGAGTATCCGGACTACGCCGCATTCGATGGCTTCATCATCCCGGGATC
AGTGAGCAGCGCCAACGATAACGTCGACTGGCAGCGCCGCCTCTGCGTGG
AGATCCAGCGGCTGTACCGGGAGCGCCGCCCGCTGCTGGGCATCTGCTTC
GGCCACCAAATCATCGCGCATGCCCTCGGCGGCGAGGTGCTCCGC
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