mRNA_P-wetherbeei_contig11222.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11222.2.1
Unique NamemRNA_P-wetherbeei_contig11222.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig11222.2.1 vs. uniprot
Match: A0A835ZCA2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCA2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.800e-12
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:  292 GMMTSMWASVNLLTVWFGDDRIVKVAVRVAGAEFALGFLFILWHVRNGAWAVADNLG--PLICWPFVAVTCAYFGRQL 519
            G +T+  A++ L+ VWFGDDR VK AVR+ G +  LG L +L  +    WA     G   L+CWP     CA FGRQL
Sbjct:   97 GAVTAQIAALQLMMVWFGDDRTVKCAVRMLGTQLTLGSLALLRQLAKSGWAGLSPGGRAALVCWPVTIAACALFGRQL 174
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11222.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZCA2_9STRA2.800e-1244.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11222contigP-wetherbeei_contig11222:787..2071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1285
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_000470.1
Cds size228
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185902.9296165-UTR-P-wetherbeei_contig11222:786..10801683185902.9296165-UTR-P-wetherbeei_contig11222:786..1080Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11222 787..1080 +
1683185902.946631-UTR-P-wetherbeei_contig11222:1308..20711683185902.946631-UTR-P-wetherbeei_contig11222:1308..2071Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11222 1309..2071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185902.938397-CDS-P-wetherbeei_contig11222:1080..13081683185902.938397-CDS-P-wetherbeei_contig11222:1080..1308Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11222 1081..1308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11222.2.1prot_P-wetherbeei_contig11222.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11222 1081..1308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11222.2.1

>prot_P-wetherbeei_contig11222.2.1 ID=prot_P-wetherbeei_contig11222.2.1|Name=mRNA_P-wetherbeei_contig11222.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
MMTSMWASVNLLTVWFGDDRIVKVAVRVAGAEFALGFLFILWHVRNGAWA
VADNLGPLICWPFVAVTCAYFGRQL*
back to top

mRNA from alignment at P-wetherbeei_contig11222:787..2071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11222.2.1 ID=mRNA_P-wetherbeei_contig11222.2.1|Name=mRNA_P-wetherbeei_contig11222.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1285bp|location=Sequence derived from alignment at P-wetherbeei_contig11222:787..2071+ (Phaeothamnion wetherbeei SAG_119_79)
TAACACACCAACTTCGATTGGTGCATTTTTCCCTTTTGCATTTGGCTGTT
GATCTTCTCTTGTTTTTTACAGGTCGTTCTTTCTCCACTGGTCTTCCTTC
CTCCTTCGATCTTTGTGTCTCTAGCGGTCCCGCTGTCTTCGCCGGTCTTT
CTTGCTTTCTCCCGTAATGGTCTCTTCCTCGTCGTCGATCGTTTTCTTCC
CTCCTTCCTTTCTCCACTGATCTCCCTTCACGGGTTCTTCTTTCTTTTCT
TTCATGCTCTGTTCCTTCGCTGCAAATTCTCGGACTGCATAGGCATGATG
ACGTCCATGTGGGCATCCGTCAACCTCCTGACCGTGTGGTTCGGTGACGA
CCGCATTGTCAAGGTCGCCGTCCGCGTCGCCGGCGCCGAATTCGCACTCG
GCTTCCTCTTCATCCTGTGGCACGTCCGGAATGGAGCCTGGGCGGTCGCC
GACAACCTGGGGCCGCTGATCTGCTGGCCGTTCGTGGCAGTTACGTGCGC
GTACTTCGGGCGGCAGCTTTGAGGAAGCTAGCGAGGGGCGTCACTGAGGA
GGGCATCGTTGTTGCGGCTGGAGGGCGGTAGGCTGGCGTCGACGGCGGCT
TGGAGGTCAGCGATCTGCTCTGCCGCCGGCCTCTGCTGCTTCTGCTGTCC
GCTGCTCTCCTGGCGCCACTGCTGCGGTCGGAAAGTCAAATTGGTGGCTC
TGAGGAGGCTGCTCTGCCGGCAGCTTCTTGCCGATACAGCTGTTCTGGGT
GCCAGCACTGAGCAGCCGGGGGTAGCAGCTCTGAAGTCTTGCGTGGCAGC
TCTGAGAAATTGCGAGCAGCGGCAGCAGGAGCAGCTGCTGCTGCTGTTGC
TGCTGCTGCTGCGCTGAGGTCCTTCAGAGCGTCTCCGGTGAATGGGAATA
GGTGGTTTGTTTTCAGGAGGTTTGGTGTGTTGCGGCTGTAAGCTTTTTGT
GAGCGGCTGGTGGCGGCGGCGGCGGCGGCGGCAGAGTGAGTCATTGTAAT
TATTTAGCAGCGCGGGAGGTGGTGGCTGTTGCGGCGTTGCCGTACGCTGC
CGTGGACGCTAGCTTGTGGTGGCGGCGCGGTTGCTGCAGCGGACGCCCTG
GCAGCGGAGGCGGGGGTAGTGTGGTCGCACACTGAACGGCATTTGGCACT
TCCACATAGCTGGACCGATGGCTGCTTATTTAAAAAGAGGGATTAGGCAA
GGCAAAACGTTAGAACCGCGCAACAAATTGGATACGAATCCCCATGAAAA
AATGCAGAGACCAGAGGCCTGTGTGCTAGCGCCCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11222:787..2071+

>mRNA_P-wetherbeei_contig11222.2.1 ID=mRNA_P-wetherbeei_contig11222.2.1|Name=mRNA_P-wetherbeei_contig11222.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig11222:787..2071+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGACGTCCATGTGGGCATCCGTCAACCTCCTGACCGTGTGGTTCGG
TGACGACCGCATTGTCAAGGTCGCCGTCCGCGTCGCCGGCGCCGAATTCG
CACTCGGCTTCCTCTTCATCCTGTGGCACGTCCGGAATGGAGCCTGGGCG
GTCGCCGACAACCTGGGGCCGCTGATCTGCTGGCCGTTCGTGGCAGTTAC
GTGCGCGTACTTCGGGCGGCAGCTTTGA
back to top