mRNA_P-wetherbeei_contig11213.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11213.4.1
Unique NamemRNA_P-wetherbeei_contig11213.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11213.4.1 vs. uniprot
Match: A0A496VAZ8_9GAMM (Uncharacterized protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A496VAZ8_9GAMM)

HSP 1 Score: 65.1 bits (157), Expect = 5.600e-10
Identity = 41/122 (33.61%), Postives = 61/122 (50.00%), Query Frame = 1
Query:   49 VAARHAFADLLALQGRTAIRTADRNPAALGPGDWARAQSRLERALRLDPGEPAIAEDAGRLHEL--RARVAPGPDPKSELSRALGYFRDSLAHRPTSPYTWANLAIVKSGLGEFDAELRGAI 408
            +AA    ADL A Q R  ++  +    AL    W    + L  A   +P  P + E  G+ + L  R+ V    +    L +AL Y+  +   RP S YTWAN+AI+KS LG++DA+   A+
Sbjct:   45 IAASWGLADLFAKQARYDMQQWEDQ--ALTTDSWKSIHATLTWAQSFEPDHPDLLESTGQAYYLLYRSGVMTAAEQLMALQQALDYYLKAAKQRPVSAYTWANIAILKSRLGQYDAQFLAAL 164          
BLAST of mRNA_P-wetherbeei_contig11213.4.1 vs. uniprot
Match: A0A534I062_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534I062_9GAMM)

HSP 1 Score: 60.5 bits (145), Expect = 1.680e-8
Identity = 40/110 (36.36%), Postives = 54/110 (49.09%), Query Frame = 1
Query:   49 VAARHAFADLLALQGRTAIRTADRNPAALGPGDWARAQSRLERALRLDPGEPAIAEDAGRLHELRARVAPGPDPKSELSR----ALGYFRDSLAHRPTSPYTWANLAIVK 366
            VAAR   AD+ A   ++ ++T       L   +W      L RAL L PG+P    + GRLH +            E+SR      GY+R +LA RPT P+ W NLA+VK
Sbjct:    8 VAARTGLADVYAEPAKSYLQTKRDAGEVLTRDEWQALYGSLTRALALAPGDPDNLSELGRLHRILLEA--DDLDAGEISRYGDAGAGYYRAALALRPTWPWDWGNLALVK 115          
BLAST of mRNA_P-wetherbeei_contig11213.4.1 vs. uniprot
Match: A0A534J851_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534J851_9GAMM)

HSP 1 Score: 57.4 bits (137), Expect = 2.800e-7
Identity = 37/110 (33.64%), Postives = 54/110 (49.09%), Query Frame = 1
Query:   49 VAARHAFADLLALQGRTAIRTADRNPAALGPGDWARAQSRLERALRLDPGEPAIAEDAGRLHELRARVAPGPDPKSELSR----ALGYFRDSLAHRPTSPYTWANLAIVK 366
            +AAR   AD+ A   ++ ++T       L   +W      L RAL L PG+P    + GRLH +            E+SR      GY++ +LA RPT P+ W +LA+VK
Sbjct:   10 IAARTGLADVYAESAKSYLQTKRDASEVLTRDEWQALYGSLTRALALAPGDPDNLSELGRLHRIFLEA--NDLDAGEISRYGDAGAGYYQAALALRPTWPWDWGDLALVK 117          
BLAST of mRNA_P-wetherbeei_contig11213.4.1 vs. uniprot
Match: A0A0A6P6X6_9GAMM (Uncharacterized protein n=1 Tax=Candidatus Thiomargarita nelsonii TaxID=1003181 RepID=A0A0A6P6X6_9GAMM)

HSP 1 Score: 56.6 bits (135), Expect = 5.710e-7
Identity = 30/91 (32.97%), Postives = 48/91 (52.75%), Query Frame = 1
Query:  142 GDWARAQSRLERALRLDPGEPAIAEDAGRLHELRARVAP--GPDPKSELSRALGYFRDSLAHRPTSPYTWANLAIVKSGLGEFDAELRGAI 408
            G W + Q+ L  A   +  +P   E+ G+ + L  R       +    LS AL Y+ D+   +P S YTWAN+AI+K+ L ++DA+   A+
Sbjct:   50 GHWQQTQTTLRVAQFFESAQPKFLEEMGKANYLLFRYGTITAAEKYMALSLALEYYVDAALQKPVSAYTWANIAILKNRLRQYDAQFITAL 140          
BLAST of mRNA_P-wetherbeei_contig11213.4.1 vs. uniprot
Match: A0A661BTL8_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BTL8_9GAMM)

HSP 1 Score: 55.8 bits (133), Expect = 1.230e-6
Identity = 43/126 (34.13%), Postives = 61/126 (48.41%), Query Frame = 1
Query:   40 LAVVAARHAFADLLALQGRTAIRTADRNPAALGPGDWARAQSRLERALRLDPGEPAIAEDAGRLHELR-ARVAPGPDPKSELSRALGY--FRDSLAHRPTSPYTWANLAIVKSGLGEFDAELRGAI 408
            LA +AA  + AD+ A      +         L   DW   ++ L  AL+ DP  P I E      E R A +AP  + K+  SR   Y  ++ +++ RPT P+ W NLA+VK  LGE D E   A+
Sbjct:   20 LAYIAASWSLADIYARPSFITLEKWRSEKIKLDDDDWDELRANLSYALKHDPDNPNIHEYLALAIEGRYADIAP-KNEKAMPSRREAYTHYKQAISLRPTGPFAWVNLALVKYRLGETDDEFYYAL 144          
BLAST of mRNA_P-wetherbeei_contig11213.4.1 vs. uniprot
Match: A0A090AQT6_9GAMM (Uncharacterized protein n=1 Tax=Thioploca ingrica TaxID=40754 RepID=A0A090AQT6_9GAMM)

HSP 1 Score: 55.1 bits (131), Expect = 2.560e-6
Identity = 31/88 (35.23%), Postives = 49/88 (55.68%), Query Frame = 1
Query:  148 WARAQSRLERALRLDPGEPAIAEDAGRLHELRARVAPGPDPK-SELSRALGYFRDSLAHRPTSPYTWANLAIVKSGLGEFDAELRGAI 408
            W    ++L+ A  L+P  P + E   R+H L A    G   + + L +AL Y   ++  RP S YTWAN+A++KS L ++DA+   A+
Sbjct:   59 WQTTLTQLQWANDLEPEHPDLLELLARVHYLLAISNRGIKLQLTSLQQALDYNLKAIQQRPVSAYTWANVALLKSQLKQYDAQFETAL 146          
BLAST of mRNA_P-wetherbeei_contig11213.4.1 vs. uniprot
Match: A0A1F3YGZ1_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F3YGZ1_9PROT)

HSP 1 Score: 54.7 bits (130), Expect = 3.110e-6
Identity = 34/90 (37.78%), Postives = 47/90 (52.22%), Query Frame = 1
Query:  148 WARAQSRLERALRLDPGEPAIAEDAGRLHELRARV---APGPDPKSELSRALGYFRDSLAHRPTSPYTWANLAIVKSGLGEFDAELRGAI 408
            W R    L  ALRL P +P + ED G  +E  AR    A G +  +E   AL ++R +   RPT PYTW  +A++K  L + D E   A+
Sbjct:   66 WRRTVDELREALRLAPRDPNLWEDLGLAYEAGARKFVRAGGWNVYTEF--ALIHYRQAALLRPTWPYTWIRVALMKYQLNQLDDEFGRAL 153          
BLAST of mRNA_P-wetherbeei_contig11213.4.1 vs. uniprot
Match: UPI000849F700 (hypothetical protein n=1 Tax=Candidatus Marithrix sp. Canyon 246 TaxID=1827136 RepID=UPI000849F700)

HSP 1 Score: 53.9 bits (128), Expect = 5.830e-6
Identity = 33/114 (28.95%), Postives = 53/114 (46.49%), Query Frame = 1
Query:   67 FADLLALQGRTAIRTADRNPAALGPGDWARAQSRLERALRLDPGEPAIAEDAGRLHELRARVAPGPDPKSELSRALGYFRDSLAHRPTSPYTWANLAIVKSGLGEFDAELRGAI 408
            FADL   Q    ++  ++    +    W    + L +A  L+P  P I E  G  +    R   G   K  L + L Y+  ++  +P S Y WAN+AI+K  L ++DA+   A+
Sbjct:   35 FADLFVKQANYDLQQWEKQ-GRISQDSWKSIHTMLAKARYLEPYNPEILESQGTAYYQLYRY--GAVKKIVLQQTLNYYLKAVQQKPVSAYIWANIAIIKFRLRQYDAQFLAAL 145          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11213.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A496VAZ8_9GAMM5.600e-1033.61Uncharacterized protein n=3 Tax=Gammaproteobacteri... [more]
A0A534I062_9GAMM1.680e-836.36Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A534J851_9GAMM2.800e-733.64Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A0A6P6X6_9GAMM5.710e-732.97Uncharacterized protein n=1 Tax=Candidatus Thiomar... [more]
A0A661BTL8_9GAMM1.230e-634.13Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A090AQT6_9GAMM2.560e-635.23Uncharacterized protein n=1 Tax=Thioploca ingrica ... [more]
A0A1F3YGZ1_9PROT3.110e-637.78Uncharacterized protein n=2 Tax=unclassified Betap... [more]
UPI000849F7005.830e-628.95hypothetical protein n=1 Tax=Candidatus Marithrix ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11213contigP-wetherbeei_contig11213:1782..2189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1232683.ADIMK_1456
Model size408
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue9.36e-06
EggNOG OGs2CHNF@1|root,32SWQ@2|Bacteria,1N1UZ@1224|Proteobacteria,1T1D5@1236|Gammaproteobacteria
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185902.5390444-CDS-P-wetherbeei_contig11213:1781..21891683185902.5390444-CDS-P-wetherbeei_contig11213:1781..2189Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11213 1782..2189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11213.4.1prot_P-wetherbeei_contig11213.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11213 1782..2189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11213.4.1

>prot_P-wetherbeei_contig11213.4.1 ID=prot_P-wetherbeei_contig11213.4.1|Name=mRNA_P-wetherbeei_contig11213.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
MATGTLAVAMLAALAVVAARHAFADLLALQGRTAIRTADRNPAALGPGDW
ARAQSRLERALRLDPGEPAIAEDAGRLHELRARVAPGPDPKSELSRALGY
FRDSLAHRPTSPYTWANLAIVKSGLGEFDAELRGAI
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mRNA from alignment at P-wetherbeei_contig11213:1782..2189+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11213.4.1 ID=mRNA_P-wetherbeei_contig11213.4.1|Name=mRNA_P-wetherbeei_contig11213.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig11213:1782..2189+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACAGGCACGCTGGCGGTCGCGATGCTGGCCGCGCTTGCCGTCGT GGCTGCGCGGCATGCGTTTGCGGACCTGCTGGCCTTGCAAGGGCGGACGG CGATCCGGACGGCGGACCGGAACCCGGCTGCGCTCGGGCCCGGGGACTGG GCGCGAGCGCAGTCGCGCCTGGAGCGCGCATTGCGGCTGGACCCGGGCGA ACCCGCGATCGCCGAGGACGCCGGTCGCCTGCACGAATTGCGCGCGCGGG TCGCTCCGGGCCCCGATCCGAAATCGGAACTGTCCCGCGCGCTCGGGTAT TTCCGCGACAGCCTCGCCCACCGGCCGACATCGCCGTACACCTGGGCCAA CCTCGCAATCGTGAAGTCCGGGCTTGGCGAGTTCGACGCCGAGCTCCGGG GCGCCATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11213:1782..2189+

>mRNA_P-wetherbeei_contig11213.4.1 ID=mRNA_P-wetherbeei_contig11213.4.1|Name=mRNA_P-wetherbeei_contig11213.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig11213:1782..2189+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACAGGCACGCTGGCGGTCGCGATGCTGGCCGCGCTTGCCGTCGT
GGCTGCGCGGCATGCGTTTGCGGACCTGCTGGCCTTGCAAGGGCGGACGG
CGATCCGGACGGCGGACCGGAACCCGGCTGCGCTCGGGCCCGGGGACTGG
GCGCGAGCGCAGTCGCGCCTGGAGCGCGCATTGCGGCTGGACCCGGGCGA
ACCCGCGATCGCCGAGGACGCCGGTCGCCTGCACGAATTGCGCGCGCGGG
TCGCTCCGGGCCCCGATCCGAAATCGGAACTGTCCCGCGCGCTCGGGTAT
TTCCGCGACAGCCTCGCCCACCGGCCGACATCGCCGTACACCTGGGCCAA
CCTCGCAATCGTGAAGTCCGGGCTTGGCGAGTTCGACGCCGAGCTCCGGG
GCGCCATC
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