mRNA_P-wetherbeei_contig112.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig112.1.1
Unique NamemRNA_P-wetherbeei_contig112.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig112.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig112contigP-wetherbeei_contig112:2..864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2903.EOD11550
PFAMsLRR_6
Model size863
Max annot lvl2759|Eukaryota
KEGG koko:K15082
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.35e-08
EggNOG OGsKOG1947@1|root,KOG1947@2759|Eukaryota
DescriptionF-box LRR-repeat protein
Cds size441
COG categoryB
BRITEko00000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185901.5336936-UTR-P-wetherbeei_contig112:1..41683185901.5336936-UTR-P-wetherbeei_contig112:1..4Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig112 2..4 +
1683185901.5525503-UTR-P-wetherbeei_contig112:445..8641683185901.5525503-UTR-P-wetherbeei_contig112:445..864Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig112 446..864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185901.5442054-CDS-P-wetherbeei_contig112:4..4451683185901.5442054-CDS-P-wetherbeei_contig112:4..445Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig112 5..445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig112.1.1prot_P-wetherbeei_contig112.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig112 5..445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig112.1.1

>prot_P-wetherbeei_contig112.1.1 ID=prot_P-wetherbeei_contig112.1.1|Name=mRNA_P-wetherbeei_contig112.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
MAAATAAEAATAAQAKAAAACAAASVAAIGGDVCASLTRLSLRGLVDLRD
DAVAAMAASCAGNLRELDLNGAASITDASLVALRHYCAPSLREIDLSFCR
RISNGGLGQLVDASERLHTLRLWSCRQIDATFHEGHLREDLKIIRF*
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mRNA from alignment at P-wetherbeei_contig112:2..864+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig112.1.1 ID=mRNA_P-wetherbeei_contig112.1.1|Name=mRNA_P-wetherbeei_contig112.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=863bp|location=Sequence derived from alignment at P-wetherbeei_contig112:2..864+ (Phaeothamnion wetherbeei SAG_119_79)
GCAATGGCAGCGGCGACCGCCGCTGAAGCAGCCACGGCCGCACAAGCCAA
GGCGGCGGCGGCGTGCGCCGCCGCCTCCGTGGCGGCGATTGGTGGCGACG
TGTGTGCCAGCCTGACCCGCCTGTCGCTGCGCGGGCTGGTCGACCTCCGG
GACGATGCCGTCGCAGCTATGGCGGCGTCCTGCGCTGGGAACCTGCGCGA
GCTGGACCTGAACGGTGCCGCCTCCATCACGGACGCGTCGCTGGTGGCGC
TGCGCCACTACTGCGCGCCATCGCTGCGGGAGATCGATTTGTCATTTTGC
CGGCGCATCAGCAACGGCGGGCTCGGCCAGTTGGTGGATGCCAGCGAGCG
GTTGCACACGCTGCGGCTGTGGAGCTGTCGGCAGATCGACGCCACCTTCC
ACGAGGGACACCTGCGGGAAGATCTGAAGATCATTCGCTTCTGAATTTGT
CAAGCCGGAATCAAGGGTACGAATGGTTGTTCATGGTGGGTACGTGTTCA
ATGGGTGGCGGGTTGGCGAGCGATGTTTGGTTTCTTGGCATGGCGGCTTC
GATTGTCTTATGGGGCACTCGAACGTGACGGAGTGCGGTCAGGTGGCGAT
TTGGTAGCAAAAGCGGCCGCGGCGGCGATGCGACACCGGCCCCTGTGGCA
CTAACGGTGGGCGGTGGCGTTGCCTAGTGTGAGTGCGGTGGTGCTGGCGG
CGGCGGTGGTGCTGGCGGCGGCGGTGGCGGCGACGACCGGGCGGCCGCGG
TGGCAATTCGTGTGGCGTAAGGAAAAAGCGGCTCACGGGGGACCCGGGGT
GTCGGTGCGTCCCAAACCGCCAAAACAACCGTGCGTACATTATGTTGGGA
AAATATGTGGAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig112:2..864+

>mRNA_P-wetherbeei_contig112.1.1 ID=mRNA_P-wetherbeei_contig112.1.1|Name=mRNA_P-wetherbeei_contig112.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig112:2..864+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGCGGCGACCGCCGCTGAAGCAGCCACGGCCGCACAAGCCAAGGC
GGCGGCGGCGTGCGCCGCCGCCTCCGTGGCGGCGATTGGTGGCGACGTGT
GTGCCAGCCTGACCCGCCTGTCGCTGCGCGGGCTGGTCGACCTCCGGGAC
GATGCCGTCGCAGCTATGGCGGCGTCCTGCGCTGGGAACCTGCGCGAGCT
GGACCTGAACGGTGCCGCCTCCATCACGGACGCGTCGCTGGTGGCGCTGC
GCCACTACTGCGCGCCATCGCTGCGGGAGATCGATTTGTCATTTTGCCGG
CGCATCAGCAACGGCGGGCTCGGCCAGTTGGTGGATGCCAGCGAGCGGTT
GCACACGCTGCGGCTGTGGAGCTGTCGGCAGATCGACGCCACCTTCCACG
AGGGACACCTGCGGGAAGATCTGAAGATCATTCGCTTCTGA
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