mRNA_P-wetherbeei_contig11037.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11037.2.1
Unique NamemRNA_P-wetherbeei_contig11037.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11037.2.1 vs. uniprot
Match: A0A1F4DFE6_9PROT (2-dehydropantoate 2-reductase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DFE6_9PROT)

HSP 1 Score: 142 bits (358), Expect = 4.740e-39
Identity = 77/125 (61.60%), Postives = 93/125 (74.40%), Query Frame = 1
Query:    1 WQKLVLNASGNTLAAMTRIDLGGLGTDPGLCELSVKVMREALAVAAAQGWDLTAEMDVEKLARRG--KPGQRPSMLQDVLQHRALEVDALLGQIQAFARELKIATPSIDVILPLLRGLDRGLRAA 369
            W+KLV NASGN L+A+T + LG +G D  L  +   +MRE LAV AA GWDL +EMDVE++A R   KP  R SMLQDVL  R LEV+A LGQIQAFARE  +A P+ID+ILPLLRGLDR LR++
Sbjct:  202 WRKLVSNASGNPLSALTGLMLGEIGADAELRRVMADMMRETLAVTAALGWDLRSEMDVERIAMRPGRKPDIRSSMLQDVLLKRPLEVEAQLGQIQAFAREAGVAVPTIDIILPLLRGLDRSLRSS 326          
BLAST of mRNA_P-wetherbeei_contig11037.2.1 vs. uniprot
Match: A0A0A1PNA5_9BACT (2-dehydropantoate 2-reductase n=1 Tax=bacterium YEK0313 TaxID=1522316 RepID=A0A0A1PNA5_9BACT)

HSP 1 Score: 124 bits (310), Expect = 6.610e-32
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 1
Query:    1 WQKLVLNASGNTLAAMTRIDLGGLGTDPGLCELSVKVMREALAVAAAQGWDLTAEMDVEKLARR--GKPGQRPSMLQDVLQHRALEVDALLGQIQAFARELKIATPSIDVILPLLRGLDRGLRA 366
            W+KL  N  GN L+A+TRI     GT PG+ E+S  ++ E + VA A GWDL  E D++ +A    G+ G R SMLQDV   R +EV+A++GQ+QAFARE  +ATP+IDVILPL+RGLD  +R+
Sbjct:  201 WEKLFRNVGGNPLSALTRIPTSDWGTAPGIGEVSRGMIAETVEVARALGWDLGEETDIDAIANPAPGRTGGRSSMLQDVEAGRPMEVEAIVGQVQAFAREAGVATPTIDVILPLMRGLDAAIRS 324          
BLAST of mRNA_P-wetherbeei_contig11037.2.1 vs. uniprot
Match: A0A4D7QKE5_9HYPH (2-dehydropantoate 2-reductase n=1 Tax=Phreatobacter sp. NMCR1094 TaxID=2570229 RepID=A0A4D7QKE5_9HYPH)

HSP 1 Score: 122 bits (305), Expect = 3.550e-31
Identity = 63/119 (52.94%), Postives = 83/119 (69.75%), Query Frame = 1
Query:    1 WQKLVLNASGNTLAAMTRIDLGGLGTDPGLCELSVKVMREALAVAAAQGWDLTAEMDVEKLA--RRGKPGQRPSMLQDVLQHRALEVDALLGQIQAFARELKIATPSIDVILPLLRGLD 351
            W+KL LN + N LAA+TR+ LG     PG+ +L V+++ E L VA + GWDLT  +D  K    R  K G RPSMLQDV   R +EV+A++GQ+QAF RE  +ATP+IDV+LP+LRGLD
Sbjct:  202 WEKLTLNIAANPLAALTRLPLGRWVEAPGISDLGVRMITETLEVAKSMGWDLTDVIDPAKAVPTRPNKSGGRPSMLQDVEAGRPMEVEAIVGQVQAFGRENGVATPAIDVVLPMLRGLD 320          
BLAST of mRNA_P-wetherbeei_contig11037.2.1 vs. uniprot
Match: A0A2S0NH17_9HYPH (2-dehydropantoate 2-reductase n=1 Tax=Phreatobacter cathodiphilus TaxID=1868589 RepID=A0A2S0NH17_9HYPH)

HSP 1 Score: 121 bits (304), Expect = 5.180e-31
Identity = 64/125 (51.20%), Postives = 84/125 (67.20%), Query Frame = 1
Query:    1 WQKLVLNASGNTLAAMTRIDLGGLGTDPGLCELSVKVMREALAVAAAQGWDLTAEMD--VEKLARRGKPGQRPSMLQDVLQHRALEVDALLGQIQAFARELKIATPSIDVILPLLRGLDRGLRAA 369
            W+KLVLN + N L A+TR+ LG     P + +L V ++RE L VA + GWDLT  +D      A+ G+PG RPSMLQD    R +EV+A++GQ+QAF RE  +ATP+IDV+LPLLR LD   R A
Sbjct:  202 WEKLVLNIAANPLCALTRLPLGRWHEVPAIADLGVTLIRELLEVAKSLGWDLTHTVDPAASVPAKPGRPGGRPSMLQDAEAGRPMEVEAIVGQLQAFGRENGVATPAIDVVLPLLRALDASSREA 326          
BLAST of mRNA_P-wetherbeei_contig11037.2.1 vs. uniprot
Match: A0A6I1JFP4_9HYPH (2-dehydropantoate 2-reductase n=1 Tax=Xanthobacteraceae bacterium TaxID=2021379 RepID=A0A6I1JFP4_9HYPH)

HSP 1 Score: 116 bits (290), Expect = 5.200e-30
Identity = 59/122 (48.36%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    1 WQKLVLNASGNTLAAMTRIDLGGLGTDPGLCELSVKVMREALAVAAAQGWDLTAEMDVEKL--ARRGKPGQRPSMLQDVLQHRALEVDALLGQIQAFARELKIATPSIDVILPLLRGLDRGL 360
            W+KLVLN + N L A++R+ LG     PG+ EL + ++RE L VA + GWDLT  +D      AR G+PG +PSMLQD    R +EV+A++GQ+QAF RE  + TP++DV+LPLLR L+  +
Sbjct:   88 WEKLVLNIAANPLCALSRLPLGRWHEVPGIGELGIAMIREMLEVAKSLGWDLTESVDPAAAVPARPGRPGGKPSMLQDAEAGRPMEVEAIVGQLQAFGREHGVGTPAMDVVLPLLRALNAAV 209          
BLAST of mRNA_P-wetherbeei_contig11037.2.1 vs. uniprot
Match: A0A1X7Q9Q2_AZOLI (2-dehydropantoate 2-reductase n=5 Tax=Azospirillum TaxID=191 RepID=A0A1X7Q9Q2_AZOLI)

HSP 1 Score: 118 bits (295), Expect = 1.080e-29
Identity = 63/123 (51.22%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    1 WQKLVLNASGNTLAAMTRIDLGGLGTDPGLCELSVKVMREALAVAAAQGWDLTAEMDVEKLARRG--KPGQRPSMLQDVLQHRALEVDALLGQIQAFARELKIATPSIDVILPLLRGLDRGLR 363
            W KL++NA GN LAA+TR+       DP L EL  ++  E    A A G+DLT  +D +   R    +   RPSMLQDVL  RA EV+ LLGQ+QAFARE  + TP ID++LP+LRGLDR LR
Sbjct:  205 WLKLLVNAPGNPLAALTRLSAKDRAADPELAELGRRIADEVADTARALGYDLTQHVDADDTMRWAATRSETRPSMLQDVLHGRATEVECLLGQVQAFARERSVPTPVIDIVLPILRGLDRSLR 327          
BLAST of mRNA_P-wetherbeei_contig11037.2.1 vs. uniprot
Match: A0A2T4YXX5_9HYPH (2-dehydropantoate 2-reductase n=1 Tax=Phreatobacter oligotrophus TaxID=1122261 RepID=A0A2T4YXX5_9HYPH)

HSP 1 Score: 118 bits (295), Expect = 1.120e-29
Identity = 60/122 (49.18%), Postives = 84/122 (68.85%), Query Frame = 1
Query:    1 WQKLVLNASGNTLAAMTRIDLGGLGTDPGLCELSVKVMREALAVAAAQGWDLTAEMDVEKL--ARRGKPGQRPSMLQDVLQHRALEVDALLGQIQAFARELKIATPSIDVILPLLRGLDRGL 360
            W+KL LN + N L A++R+ LG     PG+  L + +++E LAVA A GWDLT+E+D      AR G+PG +PSMLQD    R +EV+A++GQ+QAF R+  + TP+IDV+LPLLR LD  +
Sbjct:  202 WEKLALNIAANPLCALSRLPLGRWHEVPGIGALGIGMIKEMLAVAKALGWDLTSEVDPAAALPARPGRPGGKPSMLQDAEAGRPMEVEAIVGQLQAFGRDHGVPTPAIDVVLPLLRALDAAV 323          
BLAST of mRNA_P-wetherbeei_contig11037.2.1 vs. uniprot
Match: UPI00166B1F77 (2-dehydropantoate 2-reductase n=1 Tax=Alsobacter metallidurans TaxID=340221 RepID=UPI00166B1F77)

HSP 1 Score: 117 bits (292), Expect = 2.880e-29
Identity = 67/123 (54.47%), Postives = 83/123 (67.48%), Query Frame = 1
Query:    1 WQKLVLNASGNTLAAMTRIDLGGLGTDPGLCELSVKVMREALAVAAAQGWDLTAEMDVEKLAR-RGK-PGQRPSMLQDVLQHRALEVDALLGQIQAFARELKIATPSIDVILPLLRGLDRGLR 363
            W KL+LNA GN L+A+TR+  G  G D GL E+   ++RE LAVA A GWDL  ++DVE + R +G   G RPSMLQD+L  R  EV ALL Q  AF  E  IATP +DV+ PL+RGLDR +R
Sbjct:  202 WLKLLLNAPGNPLSALTRLTAGERGADEGLFEVGKALVREVLAVAKATGWDLGDDVDVEGIVRPKGTLGGGRPSMLQDILAGRPTEVAALLEQPAAFGVEHGIATPVMDVVAPLVRGLDRAVR 324          
BLAST of mRNA_P-wetherbeei_contig11037.2.1 vs. uniprot
Match: A0A4D7B8Q9_9HYPH (2-dehydropantoate 2-reductase n=1 Tax=Phreatobacter stygius TaxID=1940610 RepID=A0A4D7B8Q9_9HYPH)

HSP 1 Score: 113 bits (282), Expect = 8.510e-28
Identity = 58/123 (47.15%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    1 WQKLVLNASGNTLAAMTRIDLGGLGTDPGLCELSVKVMREALAVAAAQGWDLTAEMDVEKLARR--GKPGQRPSMLQDVLQHRALEVDALLGQIQAFARELKIATPSIDVILPLLRGLDRGLR 363
            W+KL  N +GN L+A+TR+        PG+ E+   +++E + VA A GWD    +D E +     G+ G R SMLQDV   R +EV+A++GQ+QAFARE  +ATP+IDVILPLLRGLD  ++
Sbjct:  201 WEKLFRNVAGNPLSAITRVPTADWPRAPGIGEVGRGMIKETVEVARALGWDFADSVDAEAIVNPAPGRAGGRSSMLQDVEMGRPMEVEAIVGQVQAFAREAGVATPTIDVILPLLRGLDAAIQ 323          
BLAST of mRNA_P-wetherbeei_contig11037.2.1 vs. uniprot
Match: A0A6M5XXJ0_9BURK (2-dehydropantoate 2-reductase n=1 Tax=Ramlibacter sp. H242 TaxID=2732511 RepID=A0A6M5XXJ0_9BURK)

HSP 1 Score: 110 bits (276), Expect = 3.760e-27
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 1
Query:    1 WQKLVLNASGNTLAAMTRIDLGGLGTDPGLCELSVKVMREALAVAAAQGWDLTAEMDVEKLARR--------GKPGQRPSMLQDVLQHRALEVDALLGQIQAFARELKIATPSIDVILPLLRGLDRGLR 363
            W KL+ NA  N+L A+TR+ +  L  +PGL  L  +V+ E  A+AAA G DL+      K A R          P  RPSMLQD LQ RA+EV+A+LGQ+Q FARE  +ATP +D+++PL+RGLDR  R
Sbjct:  167 WAKLLRNAPLNSLCALTRLPVDQLALEPGLQGLLEQVIDEIAAIAAADGVDLSDRATAAKAAPRLGAAVDGSAAPSIRPSMLQDALQGRAMEVEAILGQVQQFARERGVATPVLDLLVPLVRGLDRAAR 295          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11037.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4DFE6_9PROT4.740e-3961.602-dehydropantoate 2-reductase n=1 Tax=Betaproteoba... [more]
A0A0A1PNA5_9BACT6.610e-3251.612-dehydropantoate 2-reductase n=1 Tax=bacterium YE... [more]
A0A4D7QKE5_9HYPH3.550e-3152.942-dehydropantoate 2-reductase n=1 Tax=Phreatobacte... [more]
A0A2S0NH17_9HYPH5.180e-3151.202-dehydropantoate 2-reductase n=1 Tax=Phreatobacte... [more]
A0A6I1JFP4_9HYPH5.200e-3048.362-dehydropantoate 2-reductase n=1 Tax=Xanthobacter... [more]
A0A1X7Q9Q2_AZOLI1.080e-2951.222-dehydropantoate 2-reductase n=5 Tax=Azospirillum... [more]
A0A2T4YXX5_9HYPH1.120e-2949.182-dehydropantoate 2-reductase n=1 Tax=Phreatobacte... [more]
UPI00166B1F772.880e-2954.472-dehydropantoate 2-reductase n=1 Tax=Alsobacter m... [more]
A0A4D7B8Q9_9HYPH8.510e-2847.152-dehydropantoate 2-reductase n=1 Tax=Phreatobacte... [more]
A0A6M5XXJ0_9BURK3.760e-2748.062-dehydropantoate 2-reductase n=1 Tax=Ramlibacter ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11037contigP-wetherbeei_contig11037:1836..2207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1247726.MIM_c34960
Preferred namepanE
PFAMsApbA,ApbA_C
Model size372
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00726
KEGG koko:K00077
KEGG ReactionR02472
KEGG Pathwayko00770,ko01100,ko01110,map00770,map01100,map01110
KEGG ModuleM00119
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.53e-22
EggNOG OGsCOG1893@1|root,COG1893@2|Bacteria,1MX5M@1224|Proteobacteria,2VQG0@28216|Betaproteobacteria,3T41H@506|Alcaligenaceae
EC1.1.1.169
DescriptionCatalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
Cds size372
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185895.0547245-CDS-P-wetherbeei_contig11037:1835..22071683185895.0547245-CDS-P-wetherbeei_contig11037:1835..2207Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11037 1836..2207 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11037.2.1prot_P-wetherbeei_contig11037.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11037 1836..2207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11037.2.1

>prot_P-wetherbeei_contig11037.2.1 ID=prot_P-wetherbeei_contig11037.2.1|Name=mRNA_P-wetherbeei_contig11037.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
WQKLVLNASGNTLAAMTRIDLGGLGTDPGLCELSVKVMREALAVAAAQGW
DLTAEMDVEKLARRGKPGQRPSMLQDVLQHRALEVDALLGQIQAFARELK
IATPSIDVILPLLRGLDRGLRAA*
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mRNA from alignment at P-wetherbeei_contig11037:1836..2207-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11037.2.1 ID=mRNA_P-wetherbeei_contig11037.2.1|Name=mRNA_P-wetherbeei_contig11037.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig11037:1836..2207- (Phaeothamnion wetherbeei SAG_119_79)
TGGCAAAAGCTCGTGCTGAATGCGTCGGGCAACACGCTCGCCGCGATGAC GCGCATCGATCTCGGCGGGCTCGGCACCGACCCGGGCTTGTGCGAATTGT CGGTCAAGGTGATGCGCGAAGCACTCGCCGTCGCGGCGGCACAGGGCTGG GACCTCACCGCCGAAATGGACGTCGAGAAACTCGCCCGCCGCGGCAAGCC GGGCCAGCGCCCGTCGATGCTGCAGGACGTGCTGCAGCACCGCGCGCTCG AAGTCGATGCGCTCCTCGGCCAGATCCAGGCGTTCGCGCGCGAACTCAAA ATCGCGACGCCCAGCATAGACGTCATCCTGCCGCTGCTGCGCGGGCTCGA CCGCGGGCTGCGCGCAGCGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11037:1836..2207-

>mRNA_P-wetherbeei_contig11037.2.1 ID=mRNA_P-wetherbeei_contig11037.2.1|Name=mRNA_P-wetherbeei_contig11037.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig11037:1836..2207- (Phaeothamnion wetherbeei SAG_119_79)
TGGCAAAAGCTCGTGCTGAATGCGTCGGGCAACACGCTCGCCGCGATGAC
GCGCATCGATCTCGGCGGGCTCGGCACCGACCCGGGCTTGTGCGAATTGT
CGGTCAAGGTGATGCGCGAAGCACTCGCCGTCGCGGCGGCACAGGGCTGG
GACCTCACCGCCGAAATGGACGTCGAGAAACTCGCCCGCCGCGGCAAGCC
GGGCCAGCGCCCGTCGATGCTGCAGGACGTGCTGCAGCACCGCGCGCTCG
AAGTCGATGCGCTCCTCGGCCAGATCCAGGCGTTCGCGCGCGAACTCAAA
ATCGCGACGCCCAGCATAGACGTCATCCTGCCGCTGCTGCGCGGGCTCGA
CCGCGGGCTGCGCGCAGCGTAA
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