mRNA_P-wetherbeei_contig11018.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11018.2.1
Unique NamemRNA_P-wetherbeei_contig11018.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11018.2.1 vs. uniprot
Match: A0A6H5K0L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L0_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.380e-30
Identity = 76/232 (32.76%), Postives = 110/232 (47.41%), Query Frame = 1 
Query:  232 DFVMLKPGADCPICLVRRPGCPLCWSFPEGFRPSDFAYEGGMGRKA-------QAAXXXXXXXXXXXXXXXXXXXXXXXXXSGVGGXSGDGATGASALSGE-------------------SXGAGVDGQAAARPELHTDLTTPAALRLYRQVAQCFVTVFVKTVPCGGVARVTLATTAPVSLLYDMFLAASPEGCK----GSGGAYLSLPTVAGMYSLDNEDSAETDKMLGV 837
            DFV+ + G  CP+CLV +PGCP CW FPEG+ P DFAY G     +       +++                         +     + D     +A SG                      G G D +   +PELHTDLTT AA+ LYR +    + +FVK +PCG    + + ++ PVS L+D++ A + EGC     G   A++ LPT+ G+++LDN +  ETD  LGV
Sbjct:   42 DFVLHRRGKSCPVCLVGKPGCPCCWDFPEGYVPHDFAYLGPFEDSSASRPTSRRSSRSTVDGRGSVSSLPPVGDKTGSTPRTPAAAAAADRVETGAAASGSPPGRRVSLLMKGMHGVITTDKGEGADSEEKEKPELHTDLTTSAAITLYRSIVGSTIRIFVKVIPCGTATCLWMDSSWPVSYLFDLWRANAAEGCTCVFMGGIDAFMCLPTIPGLWNLDNRNLPETDTTLGV 273
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BLAST of mRNA_P-wetherbeei_contig11018.2.1 vs. uniprot
Match: A0A7S2MF12_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MF12_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 8.670e-19
Identity = 64/219 (29.22%), Postives = 90/219 (41.10%), Query Frame = 1 
Query:  181 VVHPACFGRMLAPRGHADFVMLKPGADCPICLVRRPGCPLCWSFPEGFRPSDFAYEGGMGRKAQAAXXXXXXXXXXXXXXXXXXXXXXXXXSGVGGXSGDGATGASALSGESXGAGVDGQAAARPELHTDLTTPAALRLYRQVAQCFVTVFVKTVPCGGVARVTLATTAPVSLLYDMFLAASPEGCKGSGGAYLSLPTVAGMYSLDNEDSAETDKMLGV 837
            V+HPA                L+P   CPICLVR+PGCP CW FP+GF P D+ ++G  G                                                        VD     +P++HTDLTT  AL+ +R +   +  V VKT+P G V  + +  T  V  L+ +F + S  G      A L +PTV G+Y LDN+   E++  L +
Sbjct:  131 VIHPA---------------WLRPEDICPICLVRKPGCPFCWEFPKGFAPVDYEHKGKKGEHDL----------------------------------------------------VD----TKPKIHTDLTTVGALQTFRHINSSYTNVLVKTIPAGPVIELRVLPTDNVGYLHHLFRSKSEFGMHDQ--ARLFIPTVNGIYCLDNDQVPESELTLAL 276
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11018.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0L0_9PHAE1.380e-3032.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2MF12_9STRA8.670e-1929.22Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11018contigP-wetherbeei_contig11018:64..1029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog157072.XP_008860954.1
Model size865
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000548
EggNOG OGs2CCMZ@1|root,2RTGX@2759|Eukaryota
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-07_006000.1
Cds size864
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185894.435205-CDS-P-wetherbeei_contig11018:63..7011683185894.435205-CDS-P-wetherbeei_contig11018:63..701Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11018 64..701 -
1683185894.4462547-CDS-P-wetherbeei_contig11018:803..10291683185894.4462547-CDS-P-wetherbeei_contig11018:803..1029Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11018 804..1029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11018.2.1prot_P-wetherbeei_contig11018.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11018 64..1029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11018.2.1

>prot_P-wetherbeei_contig11018.2.1 ID=prot_P-wetherbeei_contig11018.2.1|Name=mRNA_P-wetherbeei_contig11018.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=288bp
GGGESSENGGGGSENGGGRGGGNGGGRIGAGWRVFPGTPVNRGAVRQGDF
DAGRAYDSGGVVHPACFGRMLAPRGHADFVMLKPGADCPICLVRRPGCPL
CWSFPEGFRPSDFAYEGGMGRKAQAAAAAPAVTGNGGKVTAAACLAAGGG
GSGVGGGSGDGATGASALSGESGGAGVDGQAAARPELHTDLTTPAALRLY
RQVAQCFVTVFVKTVPCGGVARVTLATTAPVSLLYDMFLAASPEGCKGSG
GAYLSLPTVAGMYSLDNEDSAETDKMLGVSDRGMGEA*
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mRNA from alignment at P-wetherbeei_contig11018:64..1029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11018.2.1 ID=mRNA_P-wetherbeei_contig11018.2.1|Name=mRNA_P-wetherbeei_contig11018.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=966bp|location=Sequence derived from alignment at P-wetherbeei_contig11018:64..1029- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGTGAAAGCAGCGAGAACGGCGGCGGTGGGAGCGAAAATGGCGG
AGGCCGTGGTGGCGGGAACGGCGGCGGTCGGATCGGCGCCGGCTGGCGCG
TGTTTCCTGGAACGCCGGTGAACCGCGGCGCCGTGCGACAGGGAGACTTC
GACGCCGGAAGGGCCTATGACAGTGGCGGTGTCGTCCACCCGGCCTGCTT
TGGCCGCATGCTGGCGCCGCGCGGACCTGACCCGTCCATCGTCGCCCCGG
CGCTCTTCGGCTACAAGCTCATCCGTAAGGCGGCGGCGGGACAGCGCGGC
GCCGCGGGGCTCGGCGCGGCGCCGATGCATGCTGACTTCGTGATGCTGAA
GCCCGGCGCCGACTGCCCCATCTGCTTGGTGCGACGGCCCGGCTGCCCGC
TCTGCTGGAGCTTTCCCGAGGGGTTTCGCCCGTCGGACTTTGCCTACGAA
GGCGGCATGGGGCGGAAGGCCCAAGCGGCGGCCGCCGCACCGGCTGTAAC
AGGAAACGGCGGCAAGGTGACGGCGGCGGCGTGCCTAGCAGCTGGTGGCG
GCGGCAGCGGCGTCGGCGGTGGGTCCGGTGACGGGGCGACCGGCGCGAGC
GCCCTCTCCGGTGAAAGCGGCGGCGCCGGCGTGGACGGACAGGCGGCAGC
GCGGCCGGAGCTGCACACGGACCTGACGACGCCGGCGGCGCTGCGGCTCT
ACCGACAGGTGGCGCAGTGCTTCGTGACGGTCTTCGTCAAGACGGTACCG
TGCGGCGGCGTCGCCCGCGTCACGCTCGCCACCACGGCACCCGTTTCGCT
GCTGTACGATATGTTCCTGGCGGCGTCGCCCGAAGGCTGTAAAGGTTCCG
GCGGGGCGTACCTTTCCCTGCCGACTGTGGCGGGCATGTACAGTCTGGAC
AACGAAGACTCGGCCGAGACCGACAAAATGCTCGGGGTGAGCGATAGGGG
GATGGGAGAAGCGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11018:64..1029-

>mRNA_P-wetherbeei_contig11018.2.1 ID=mRNA_P-wetherbeei_contig11018.2.1|Name=mRNA_P-wetherbeei_contig11018.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=864bp|location=Sequence derived from alignment at P-wetherbeei_contig11018:64..1029- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGTGAAAGCAGCGAGAACGGCGGCGGTGGGAGCGAAAATGGCGG
AGGCCGTGGTGGCGGGAACGGCGGCGGTCGGATCGGCGCCGGCTGGCGCG
TGTTTCCTGGAACGCCGGTGAACCGCGGCGCCGTGCGACAGGGAGACTTC
GACGCCGGAAGGGCCTATGACAGTGGCGGTGTCGTCCACCCGGCCTGCTT
TGGCCGCATGCTGGCGCCGCGCGGACATGCTGACTTCGTGATGCTGAAGC
CCGGCGCCGACTGCCCCATCTGCTTGGTGCGACGGCCCGGCTGCCCGCTC
TGCTGGAGCTTTCCCGAGGGGTTTCGCCCGTCGGACTTTGCCTACGAAGG
CGGCATGGGGCGGAAGGCCCAAGCGGCGGCCGCCGCACCGGCTGTAACAG
GAAACGGCGGCAAGGTGACGGCGGCGGCGTGCCTAGCAGCTGGTGGCGGC
GGCAGCGGCGTCGGCGGTGGGTCCGGTGACGGGGCGACCGGCGCGAGCGC
CCTCTCCGGTGAAAGCGGCGGCGCCGGCGTGGACGGACAGGCGGCAGCGC
GGCCGGAGCTGCACACGGACCTGACGACGCCGGCGGCGCTGCGGCTCTAC
CGACAGGTGGCGCAGTGCTTCGTGACGGTCTTCGTCAAGACGGTACCGTG
CGGCGGCGTCGCCCGCGTCACGCTCGCCACCACGGCACCCGTTTCGCTGC
TGTACGATATGTTCCTGGCGGCGTCGCCCGAAGGCTGTAAAGGTTCCGGC
GGGGCGTACCTTTCCCTGCCGACTGTGGCGGGCATGTACAGTCTGGACAA
CGAAGACTCGGCCGAGACCGACAAAATGCTCGGGGTGAGCGATAGGGGGA
TGGGAGAAGCGTAG
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