mRNA_P-wetherbeei_contig11012.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11012.1.1
Unique NamemRNA_P-wetherbeei_contig11012.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11012.1.1 vs. uniprot
Match: A0A7S3ZPQ8_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPQ8_9STRA)

HSP 1 Score: 305 bits (781), Expect = 1.200e-101
Identity = 151/224 (67.41%), Postives = 188/224 (83.93%), Query Frame = 1
Query:    1 MNIFRFFGDLSHVASIVVLLLRLKAAKSAAGISLKTQELFLLVFVCRYLDLFTTYYSLYNSLMKVLYLSSTSYIVYMIRYQLPIKATYDRSQDSFLHVKFAVAPCAVIAFFTTVMWSGFRPLEVRERMIWEFSIWLEAVAIVPQLIVLQRFGEVENLTAHYVFLMGAYRALYILNWAYRANFERGYRHNWVVYIAGVVQTALFADFFYYYFLSKYRGGRLSLPS 672
            MNIFRF GD+SHV SI+VLLLRL+++KSA GISLKTQELFL+VFV RYLDLFTT+YSLYNS MKV Y++ST+YI++MIR+Q P K+ YD SQDSFLH+KFAVAPCA +A F  ++     P+++    +W FSI+LEA+AIVPQL VLQR+ EVENLT HYVF +GAYR LYILNW YR+ +E+ YRHNW+VY++G VQTAL+ DFFYYY +SKY GG+L+LP+
Sbjct:   74 MNIFRFAGDMSHVVSILVLLLRLRSSKSAVGISLKTQELFLIVFVTRYLDLFTTFYSLYNSFMKVAYIASTTYIIWMIRFQEPYKSKYDASQDSFLHIKFAVAPCAGLALFACLVKGELSPIDI----LWTFSIFLEALAIVPQLFVLQRYREVENLTGHYVFFLGAYRGLYILNWVYRSYYEQFYRHNWLVYVSGAVQTALYVDFFYYYVVSKYYGGKLTLPT 293          
BLAST of mRNA_P-wetherbeei_contig11012.1.1 vs. uniprot
Match: A0A835Z6E1_9STRA (ER lumen protein retaining receptor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E1_9STRA)

HSP 1 Score: 301 bits (770), Expect = 4.570e-101
Identity = 153/224 (68.30%), Postives = 192/224 (85.71%), Query Frame = 1
Query:    1 MNIFRFFGDLSHVASIVVLLLRLKAAKSAAGISLKTQELFLLVFVCRYLDLFTTYYSLYNSLMKVLYLSSTSYIVYMIRYQLPIKATYDRSQDSFLHVKFAVAPCAVIAFFTTVMWSGFRPLEVRERMIWEFSIWLEAVAIVPQLIVLQRFGEVENLTAHYVFLMGAYRALYILNWAYRANFERGYRHNWVVYIAGVVQTALFADFFYYYFLSKYRGGRLSLPS 672
            MNIFR  GDL H+ASI++LLL+L+A+K+A+GISLKTQELFL VFVCRYLDLFTT+YS+YNS+MKVLY++ T+ I++M+R Q PI+ TYD SQD+FLHVK+AVAPCA +A  T ++  GF   +VR+ + W FSI+LEA+AIVPQLIVLQR+ EVENLT HY+F +GAYRALYILNW YR+  ERGY+H++VVY AG+VQTAL+ DFFYYY +SKYRGG+ SLPS
Sbjct:    1 MNIFRLVGDLCHLASILLLLLKLRASKNASGISLKTQELFLAVFVCRYLDLFTTFYSVYNSVMKVLYIALTALIIHMMRAQSPIRGTYDASQDTFLHVKYAVAPCAALAALTMLV-QGF---DVRD-LFWNFSIYLEAIAIVPQLIVLQRYREVENLTGHYIFFLGAYRALYILNWIYRSFHERGYKHHYVVYFAGIVQTALYVDFFYYYAISKYRGGKFSLPS 219          
BLAST of mRNA_P-wetherbeei_contig11012.1.1 vs. uniprot
Match: F0YI66_AURAN (Uncharacterized protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI66_AURAN)

HSP 1 Score: 298 bits (762), Expect = 7.800e-100
Identity = 146/224 (65.18%), Postives = 187/224 (83.48%), Query Frame = 1
Query:    1 MNIFRFFGDLSHVASIVVLLLRLKAAKSAAGISLKTQELFLLVFVCRYLDLFTTYYSLYNSLMKVLYLSSTSYIVYMIRYQLPIKATYDRSQDSFLHVKFAVAPCAVIAFFTTVMWSGFRPLEVRERMIWEFSIWLEAVAIVPQLIVLQRFGEVENLTAHYVFLMGAYRALYILNWAYRANFERGYRHNWVVYIAGVVQTALFADFFYYYFLSKYRGGRLSLPS 672
            MN+FRF GD+SHV SI+VL+LRL+ +KSA GISLKTQELFL+VF+ RYLDLFTT+YS+YNS MKV Y+++T+ I+YMIR++ P K+ YD+SQDSFLH KFAVAPCA++A F+ ++     P++V    +W FSI+LEA+AIVPQL VLQR+ EVENLT HYVF +GAYR LYILNW YR+ +E  YRHNW+VYI+G +QTAL+ DFFYYY +SKY GG+L+LP+
Sbjct:    1 MNLFRFAGDMSHVVSIIVLILRLRVSKSAVGISLKTQELFLIVFMTRYLDLFTTFYSMYNSFMKVAYITATASIIYMIRFKEPYKSKYDKSQDSFLHFKFAVAPCAMLALFSCLIKRELNPVDV----LWTFSIFLEALAIVPQLFVLQRYREVENLTGHYVFFLGAYRFLYILNWVYRSYYEPFYRHNWLVYISGAIQTALYVDFFYYYIVSKYYGGKLTLPT 220          
BLAST of mRNA_P-wetherbeei_contig11012.1.1 vs. uniprot
Match: A0A7S2BQB3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQB3_9STRA)

HSP 1 Score: 292 bits (748), Expect = 1.130e-97
Identity = 150/224 (66.96%), Postives = 180/224 (80.36%), Query Frame = 1
Query:    1 MNIFRFFGDLSHVASIVVLLLRLKAAKSAAGISLKTQELFLLVFVCRYLDLFTTYYSLYNSLMKVLYLSSTSYIVYMIRYQLPIKATYDRSQDSFLHVKFAVAPCAVIAFFTTVMWSGFRPLEVRERMIWEFSIWLEAVAIVPQLIVLQRFGEVENLTAHYVFLMGAYRALYILNWAYRANFERGYRHNWVVYIAGVVQTALFADFFYYYFLSKYRGGRLSLPS 672
            MNIFR  GDLSHV SI +LLLRL   K A GIS+KTQELFL+VFV RYLDLFTTYYSLYNS+MK+LY+S+TSYIVYMIRY+ P ++ YD SQDSFLH+KFAV PC ++A  T +    +  +E    ++W FSI+LEAVAIVPQLI LQRF EVENLT+HY+FL+G YRALYILNW YR+ +E  Y HNW+VYIAG+ QT L+ DFFYYY +SKY GG ++LPS
Sbjct:    3 MNIFRLAGDLSHVLSIFILLLRLITTKQATGISVKTQELFLIVFVTRYLDLFTTYYSLYNSVMKMLYISTTSYIVYMIRYKEPYRSKYDSSQDSFLHMKFAVLPCFLLAGITQLYRGEYEVIE----LLWCFSIYLEAVAIVPQLITLQRFREVENLTSHYIFLIGIYRALYILNWIYRSYYEPFYVHNWIVYIAGIAQTLLYMDFFYYYIISKYYGGNMTLPS 222          
BLAST of mRNA_P-wetherbeei_contig11012.1.1 vs. uniprot
Match: A0A1Z5KJM8_FISSO (ER lumen protein retaining receptor n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJM8_FISSO)

HSP 1 Score: 290 bits (741), Expect = 1.600e-96
Identity = 147/224 (65.62%), Postives = 185/224 (82.59%), Query Frame = 1
Query:    1 MNIFRFFGDLSHVASIVVLLLRLKAAKSAAGISLKTQELFLLVFVCRYLDLFTTYYSLYNSLMKVLYLSSTSYIVYMIRYQLPIKATYDRSQDSFLHVKFAVAPCAVIAFFTTVMWSGFRPLEVRERMIWEFSIWLEAVAIVPQLIVLQRFGEVENLTAHYVFLMGAYRALYILNWAYRANFERGYRHNWVVYIAGVVQTALFADFFYYYFLSKYRGGRLSLPS 672
            MNIFR  GD+SHV SI+VLLLRL+ AK+A GIS++T ELFL+VF+ RYLDLFTT+YSLYNS+MK+LY+ ST+ I+Y I++Q PIK+TYD+SQDSFL+ +FAVAPCAV+A  T ++ SG       E ++W FSI+LE++AI+PQLIVLQR+ EVENLT +Y+F MGAYR LYILNW YRANFE  Y+H+WVVYI GV+QT L+ DFFYYYF SK  GGR +LP+
Sbjct:    3 MNIFRLAGDMSHVFSILVLLLRLRVAKNAQGISVRTHELFLIVFLTRYLDLFTTFYSLYNSIMKILYIVSTASIIYTIKFQEPIKSTYDKSQDSFLYWQFAVAPCAVLASVTHLIGSGISGFSFIE-LLWTFSIYLESIAILPQLIVLQRYREVENLTGNYIFFMGAYRFLYILNWIYRANFEAHYQHHWVVYICGVLQTLLYVDFFYYYFKSKKSGGRFTLPT 225          
BLAST of mRNA_P-wetherbeei_contig11012.1.1 vs. uniprot
Match: A0A7S1UWG6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWG6_9STRA)

HSP 1 Score: 290 bits (743), Expect = 1.620e-96
Identity = 145/224 (64.73%), Postives = 183/224 (81.70%), Query Frame = 1
Query:    1 MNIFRFFGDLSHVASIVVLLLRLKAAKSAAGISLKTQELFLLVFVCRYLDLFTTYYSLYNSLMKVLYLSSTSYIVYMIRYQLPIKATYDRSQDSFLHVKFAVAPCAVIAFFTTVMWSGFRPLEVRERMIWEFSIWLEAVAIVPQLIVLQRFGEVENLTAHYVFLMGAYRALYILNWAYRANFERGYRHNWVVYIAGVVQTALFADFFYYYFLSKYRGGRLSLPS 672
            MNIFR  GD+SHV SI+VLLLRL+ AK+A GIS++T ELFL VFV RYLDLFTT+YS YNS+MK+LY+ ST+ I+Y I++Q PIK+TYD++QD+FLH KFAVAPCA++AF T ++ SG    E+ E ++W FSI+LE++AI+PQLIVLQR+ EVENLT ++VF MGAYR LYILNW YRA+ E GY+H+WVVY  GV+QT L+ADFFYYY  S   GGR  LP+
Sbjct:   23 MNIFRLAGDMSHVFSIIVLLLRLRVAKNAQGISVRTHELFLCVFVTRYLDLFTTFYSFYNSIMKILYIGSTASIIYTIKFQEPIKSTYDKAQDTFLHWKFAVAPCAIVAFLTHMIGSGIAKFELME-LLWTFSIYLESIAILPQLIVLQRYREVENLTGNFVFFMGAYRFLYILNWIYRAHTEHGYKHHWVVYFCGVLQTLLYADFFYYYVKSVRSGGRFKLPT 245          
BLAST of mRNA_P-wetherbeei_contig11012.1.1 vs. uniprot
Match: A0A7R9ZM06_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZM06_9STRA)

HSP 1 Score: 290 bits (743), Expect = 3.520e-96
Identity = 143/223 (64.13%), Postives = 185/223 (82.96%), Query Frame = 1
Query:    1 MNIFRFFGDLSHVASIVVLLLRLKAAKSAAGISLKTQELFLLVFVCRYLDLFTTYYSLYNSLMKVLYLSSTSYIVYMIRYQLPIKATYDRSQDSFLHVKFAVAPCAVIAFFTTVMWSGFRPLEVRERMIWEFSIWLEAVAIVPQLIVLQRFGEVENLTAHYVFLMGAYRALYILNWAYRANFERGYRHNWVVYIAGVVQTALFADFFYYYFLSKYRGGRLSLP 669
            MNIFRF GD+SH+ SI+VLLLRL+ A++A GIS+++ ELFL VFV RYLDLF  +YS+YNS+MK++Y+ ST+ I+Y I+Y+ PIK+TYD+SQD+FLH +FAVAPCA+IAF T ++  G +  +  E ++W FSI+LEA+AI+PQLIVLQR+ EVENLT +Y+F MGAYRALYILNW YRAN E+GY+H+WVVY  GV+QT L+ADFFYYY  +K RG RL LP
Sbjct:   48 MNIFRFLGDMSHLFSIIVLLLRLRVARNAQGISVRSHELFLCVFVTRYLDLFFRFYSIYNSVMKIIYIGSTASIIYTIKYKEPIKSTYDKSQDTFLHWRFAVAPCAIIAFATHMIAKGMKGFDAIE-LLWMFSIYLEAIAILPQLIVLQRYKEVENLTGNYIFFMGAYRALYILNWIYRANTEKGYKHHWVVYFCGVLQTLLYADFFYYYIKAKARGNRLQLP 269          
BLAST of mRNA_P-wetherbeei_contig11012.1.1 vs. uniprot
Match: A0A1E7FS83_9STRA (KDEL receptor A n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FS83_9STRA)

HSP 1 Score: 288 bits (738), Expect = 4.430e-96
Identity = 143/224 (63.84%), Postives = 183/224 (81.70%), Query Frame = 1
Query:    1 MNIFRFFGDLSHVASIVVLLLRLKAAKSAAGISLKTQELFLLVFVCRYLDLFTTYYSLYNSLMKVLYLSSTSYIVYMIRYQLPIKATYDRSQDSFLHVKFAVAPCAVIAFFTTVMWSGFRPLEVRERMIWEFSIWLEAVAIVPQLIVLQRFGEVENLTAHYVFLMGAYRALYILNWAYRANFERGYRHNWVVYIAGVVQTALFADFFYYYFLSKYRGGRLSLPS 672
            MNIFRF GD+SH+ SI+VLLLRL+ AK+A GIS+KT EL+LLVF+ RYLDLFTT+YS YNS+MK++Y+++T+ IVY I++Q PIK+TY++ QDSFLH +FA  PCAV+AF T ++ SG       E ++W FSI+LE + I+PQL+VLQR+ EVENLT +YVF MGAYRALYILNW YRAN E+ YRH+WVVYI G +QT L+ADFFYYY  SK +GG+ SLP+
Sbjct:    1 MNIFRFCGDMSHLFSIIVLLLRLRVAKNAQGISVKTHELYLLVFLTRYLDLFTTFYSAYNSVMKLVYIAATASIVYTIKFQEPIKSTYEKGQDSFLHWQFAAIPCAVLAFITHLIGSGIADFNFME-LLWTFSIYLECLTIMPQLVVLQRYREVENLTGNYVFFMGAYRALYILNWIYRANTEKNYRHHWVVYICGTIQTLLYADFFYYYLKSKAKGGKFSLPT 223          
BLAST of mRNA_P-wetherbeei_contig11012.1.1 vs. uniprot
Match: A0A7S2SR11_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR11_9STRA)

HSP 1 Score: 285 bits (729), Expect = 3.850e-94
Identity = 142/224 (63.39%), Postives = 176/224 (78.57%), Query Frame = 1
Query:    1 MNIFRFFGDLSHVASIVVLLLRLKAAKSAAGISLKTQELFLLVFVCRYLDLFTTYYSLYNSLMKVLYLSSTSYIVYMIRYQLPIKATYDRSQDSFLHVKFAVAPCAVIAFFTTVMWSGFRPLEVRERMIWEFSIWLEAVAIVPQLIVLQRFGEVENLTAHYVFLMGAYRALYILNWAYRANFERGYRHNWVVYIAGVVQTALFADFFYYYFLSKYRGGRLSLPS 672
            MN+FR  GDLSHV SI +LLLRL + + AAGISLKTQELFL+VF+CRYLDLFTT+ S YN++MK+LY+ ST YIVYMIRY+ P ++ YD SQD+F HVK  +APC V+A  T +    F   +    ++W FSI+LEA+AI+PQLIVL R+GEVENLT HY+F +GAYRALYILNW YR+ +E+GY HNW  YIAG  QTAL+ DFFYYY +SKY GG++ LPS
Sbjct:   47 MNVFRAAGDLSHVISIFMLLLRLISTQQAAGISLKTQELFLVVFLCRYLDLFTTFISWYNTIMKILYICSTGYIVYMIRYKEPFRSKYDVSQDTFAHVKIGIAPCMVLAMLTMLFQWSFDIFD----LLWIFSIYLEAIAILPQLIVLHRYGEVENLTGHYIFFLGAYRALYILNWIYRSYYEKGYHHNWPGYIAGACQTALYVDFFYYYIISKYYGGKMKLPS 266          
BLAST of mRNA_P-wetherbeei_contig11012.1.1 vs. uniprot
Match: A0A7S2XZQ8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZQ8_9STRA)

HSP 1 Score: 281 bits (718), Expect = 3.840e-93
Identity = 147/220 (66.82%), Postives = 176/220 (80.00%), Query Frame = 1
Query:    1 MNIFRFFGDLSHVASIVVLLLRLKAAKSAAGISLKTQELFLLVFVCRYLDLFTTYYSLYNSLMKVLYLSSTSYIVYMIRYQLPIKATYDRSQDSFLHVKFAVAPCAVIAFFTTVMWSGFRPLEVRERMIWEFSIWLEAVAIVPQLIVLQRFGEVENLTAHYVFLMGAYRALYILNWAYRANFERGYRHNWVVYIAGVVQTALFADFFYYYFLSKYRGGRL 660
            MN+FR  GDLSH ASI++LL RL+ +KSA GISLKTQELFL+VF+CRYLDLFTT+ SLYNS+MKVLY+SSTSYI+YM+R     KATYD+ QDSFLH+ FAV PC V+A  T ++  GF   E    M+W FSI+LEA AI+PQL+VLQR+ EVENLT +YVFL+G YRALYI+NW YRA  E  YRH++V Y AGVVQTAL+ DFFYYY LSK +GG L
Sbjct:    3 MNLFRLAGDLSHAASIIILLQRLRTSKSALGISLKTQELFLIVFLCRYLDLFTTFISLYNSVMKVLYISSTSYIIYMMRMLPTYKATYDKDQDSFLHIYFAVVPCLVLALITNLV-QGFDFTE----MLWIFSIYLEATAIIPQLVVLQRYREVENLTGNYVFLLGCYRALYIMNWVYRAYHEAHYRHSYVAYAAGVVQTALYVDFFYYYALSKAKGGTL 217          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11012.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3ZPQ8_9STRA1.200e-10167.41Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A835Z6E1_9STRA4.570e-10168.30ER lumen protein retaining receptor-domain-contain... [more]
F0YI66_AURAN7.800e-10065.18Uncharacterized protein n=2 Tax=Aureococcus anopha... [more]
A0A7S2BQB3_9STRA1.130e-9766.96Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1Z5KJM8_FISSO1.600e-9665.63ER lumen protein retaining receptor n=2 Tax=Fistul... [more]
A0A7S1UWG6_9STRA1.620e-9664.73Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7R9ZM06_9STRA3.520e-9664.13Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
A0A1E7FS83_9STRA4.430e-9663.84KDEL receptor A n=1 Tax=Fragilariopsis cylindrus C... [more]
A0A7S2SR11_9STRA3.850e-9463.39Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2XZQ8_9STRA3.840e-9366.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11012contigP-wetherbeei_contig11012:175..1515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009042152.1
Preferred nameERD2A
PFAMsER_lumen_recept
Model size675
Max annot lvl2759|Eukaryota
KEGG koko:K08235,ko:K10949
KEGG Pathwayko05110,map05110
Hectar predicted targeting categorysignal peptide
GOsGO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005801,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0010204,GO:0012505,GO:0016020,GO:0023052,GO:0031347,GO:0031349,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0080134,GO:0098827
Exons4
Evalue1.1e-101
EggNOG OGsCOG5196@1|root,KOG3106@2759|Eukaryota
EC2.4.1.207
DescriptionER retention sequence binding
Cds size675
COG categoryU
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185894.2804127-CDS-P-wetherbeei_contig11012:174..4681683185894.2804127-CDS-P-wetherbeei_contig11012:174..468Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11012 175..468 -
1683185894.2900805-CDS-P-wetherbeei_contig11012:761..9501683185894.2900805-CDS-P-wetherbeei_contig11012:761..950Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11012 762..950 -
1683185894.2989879-CDS-P-wetherbeei_contig11012:1213..13141683185894.2989879-CDS-P-wetherbeei_contig11012:1213..1314Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11012 1214..1314 -
1683185894.3079998-CDS-P-wetherbeei_contig11012:1424..15151683185894.3079998-CDS-P-wetherbeei_contig11012:1424..1515Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11012 1425..1515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11012.1.1prot_P-wetherbeei_contig11012.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11012 175..1515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11012.1.1

>prot_P-wetherbeei_contig11012.1.1 ID=prot_P-wetherbeei_contig11012.1.1|Name=mRNA_P-wetherbeei_contig11012.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=225bp
MNIFRFFGDLSHVASIVVLLLRLKAAKSAAGISLKTQELFLLVFVCRYLD
LFTTYYSLYNSLMKVLYLSSTSYIVYMIRYQLPIKATYDRSQDSFLHVKF
AVAPCAVIAFFTTVMWSGFRPLEVRERMIWEFSIWLEAVAIVPQLIVLQR
FGEVENLTAHYVFLMGAYRALYILNWAYRANFERGYRHNWVVYIAGVVQT
ALFADFFYYYFLSKYRGGRLSLPS*
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mRNA from alignment at P-wetherbeei_contig11012:175..1515-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11012.1.1 ID=mRNA_P-wetherbeei_contig11012.1.1|Name=mRNA_P-wetherbeei_contig11012.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1341bp|location=Sequence derived from alignment at P-wetherbeei_contig11012:175..1515- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACATCTTTCGGTTCTTTGGCGACCTGAGCCATGTTGCATCCATCGT CGTGCTTTTGCTGCGCCTTAAGGCGGCGAAGAGCGCCGCAGGTGAGAAAG CCCTTGCCTTTTTAAAAATAAGAAATGCTTTCGTGGCGTCCTCGGCACCC CATCGCCCATCTGATGCACTCCTTGCCGCGACTCTCTGCAATATCCGACA GGTATATCGTTAAAAACGCAAGAGCTCTTTTTGCTGGTATTCGTGTGTCG ATACCTCGACCTTTTTACAACGTACTACTCTCTCTACAACAGCCTGATGA AGGTGCGTTTGCGCTGCCTCACGGCCCGCTCCAGTTTTGGGGCAGCCTTT GGCAAGCAAGGAAGTAATGCGGGCTTCCCACTGCGCCGTTTGCTACTTCT TCGAATCTGGTAACCACCGAGCCGCTTCCACTGTCTTTGAGGTCCTTTGA TTCATGCAATCCTTTTCCGCCTCTCTTGCAGTACGAAATGCCTTTCCAAC CCCTTACAAACCACGCTTTCCGTTTTGTGACTGTGCAACGGCCCAAACCA AAACCCGAGACACAGGTGCTGTACCTGAGCAGCACGAGCTACATTGTCTA CATGATCCGCTATCAGCTGCCCATCAAGGCGACGTACGACCGCTCGCAGG ACTCCTTCCTGCACGTCAAGTTCGCCGTCGCCCCGTGCGCGGTCATCGCC TTCTTCACCACCGTTATGTGGAGCGGCTTCCGACCACTCGAGGTGCGCGA GCGTGTGTGCTGAGCGGTTTCGCTTGGATGGCGTCTTTTTGCCATTTGCC GGCAAACTGCCATCGCTTTGGACTCTGAGACGGCGTATTTTGATATGGAG ACCCGGTGCGAAAACACTCAAGTCAGCCGCCGCCTGGTCCCCCGTCCCCG AAGTGCGAGCCGGAGACGTCCATCCGGGAACCCGTCGGGAAGAAAGATTG CTAAACGGCAAGCTTGTTTTCCTGCATGCTGCGAAGCGAATTTCCCGACT GACCTTCTGGCGACCTATCCCGTTGTCGCCACCTCCCGCCGCGGCAGATG ATCTGGGAGTTCAGCATCTGGCTGGAGGCGGTAGCCATTGTGCCGCAGCT CATCGTGCTGCAGCGCTTCGGTGAGGTCGAAAACCTGACGGCGCACTACG TCTTTCTGATGGGGGCCTACCGCGCGCTCTACATCCTCAACTGGGCCTAC CGGGCCAACTTCGAGCGGGGCTATCGCCACAACTGGGTGGTGTACATCGC AGGCGTGGTGCAGACGGCGCTTTTCGCGGACTTCTTCTACTACTACTTCC TCAGCAAGTACCGCGGCGGAAGATTGAGCCTGCCGTCATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11012:175..1515-

>mRNA_P-wetherbeei_contig11012.1.1 ID=mRNA_P-wetherbeei_contig11012.1.1|Name=mRNA_P-wetherbeei_contig11012.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=675bp|location=Sequence derived from alignment at P-wetherbeei_contig11012:175..1515- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACATCTTTCGGTTCTTTGGCGACCTGAGCCATGTTGCATCCATCGT
CGTGCTTTTGCTGCGCCTTAAGGCGGCGAAGAGCGCCGCAGGTATATCGT
TAAAAACGCAAGAGCTCTTTTTGCTGGTATTCGTGTGTCGATACCTCGAC
CTTTTTACAACGTACTACTCTCTCTACAACAGCCTGATGAAGGTGCTGTA
CCTGAGCAGCACGAGCTACATTGTCTACATGATCCGCTATCAGCTGCCCA
TCAAGGCGACGTACGACCGCTCGCAGGACTCCTTCCTGCACGTCAAGTTC
GCCGTCGCCCCGTGCGCGGTCATCGCCTTCTTCACCACCGTTATGTGGAG
CGGCTTCCGACCACTCGAGGTGCGCGAGCGTATGATCTGGGAGTTCAGCA
TCTGGCTGGAGGCGGTAGCCATTGTGCCGCAGCTCATCGTGCTGCAGCGC
TTCGGTGAGGTCGAAAACCTGACGGCGCACTACGTCTTTCTGATGGGGGC
CTACCGCGCGCTCTACATCCTCAACTGGGCCTACCGGGCCAACTTCGAGC
GGGGCTATCGCCACAACTGGGTGGTGTACATCGCAGGCGTGGTGCAGACG
GCGCTTTTCGCGGACTTCTTCTACTACTACTTCCTCAGCAAGTACCGCGG
CGGAAGATTGAGCCTGCCGTCATAG
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