mRNA_P-wetherbeei_contig10991.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10991.1.1
Unique NamemRNA_P-wetherbeei_contig10991.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10991.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10991contigP-wetherbeei_contig10991:372..1716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15709679
Model size888
Max annot lvl400682.PAC_15709679|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.65e-14
EggNOG OGs2F3H4@1|root,2T4GH@2759|Eukaryota,3AMYP@33154|Opisthokonta,3C10E@33208|Metazoa
Cds size888
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185893.3542323-CDS-P-wetherbeei_contig10991:371..9481683185893.3542323-CDS-P-wetherbeei_contig10991:371..948Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10991 372..948 -
1683185893.3621895-CDS-P-wetherbeei_contig10991:1405..17161683185893.3621895-CDS-P-wetherbeei_contig10991:1405..1716Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10991 1406..1716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10991.1.1prot_P-wetherbeei_contig10991.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10991 372..1716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10991.1.1

>prot_P-wetherbeei_contig10991.1.1 ID=prot_P-wetherbeei_contig10991.1.1|Name=mRNA_P-wetherbeei_contig10991.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=296bp
LTQIVIKKLVGDWRVDNKNFVAIVHDRCGVNIKAMETLGSYFEAVEIGCE
SHTLDFCCRKIVSAEILDNYVQFFTGLISHSHKAKEYIKAELGVSPPSVC
PTRCTYLGALGAALIKAKDTGALTRAFVTCLAAYHKPPARGDTRVPPLSH
LKVEAHAVIEFTKNIAEATYLLEGDGLVSLFTYDIIMGVATDINLCFPNI
EYVGLLQAIAEVSGGDPVLTEYFQRLARAVLTPAKDYFFNKVITELVPQL
KIFHGAALANPMLMHRVMPTIGATRDILISITKLASSSLLDAPQIE
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mRNA from alignment at P-wetherbeei_contig10991:372..1716-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10991.1.1 ID=mRNA_P-wetherbeei_contig10991.1.1|Name=mRNA_P-wetherbeei_contig10991.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1345bp|location=Sequence derived from alignment at P-wetherbeei_contig10991:372..1716- (Phaeothamnion wetherbeei SAG_119_79)
CTGACGCAGATCGTCATCAAGAAGCTTGTCGGCGACTGGCGTGTTGACAA
CAAGAACTTCGTCGCTATTGTCCACGACCGTTGCGGCGTCAACATAAAGG
CGATGGAGACGCTGGGCAGCTACTTCGAAGCGGTCGAAATCGGCTGCGAG
AGTCACACGCTCGACTTCTGCTGCCGGAAGATTGTCAGCGCCGAAATTCT
CGACAACTATGTTCAGTTCTTCACGGGGCTGATCTCGCACAGCCACAAGG
CCAAGGAATACATTAAGGCGGAACTCGGAGTTTCTCCTCCCAGTGTCTGC
CCAACCCGCTGGTGAGTGACGGGATAAGCGCCCCGTCAGCCAGCCGCAGC
GGGGTCGAAACTGCCATGTGTTGCGTGTCAGCTGCCTGTGCATTGCGACA
CAGTATTGCCGGCGCAGGCGCGATGGCCAGCCGCTGCCGAGTTTACTGAT
AAGTAGTATGGAACGAGGTTTTCTGAGTTGCCTTCTGTGCCGTCTTCTTG
GTGACACTTGTTTCCCGGCCGTTGTTTTATGTGTGCTCATGGGCGGGCCA
TGTGGGAGTTGCGCTTGGGCGGTGGCAAAAAGCCGCCCTTCTCGTGCGTG
ATTCTGCTCTTTTTCACTTCCGCGTGTGCCTGCCTGTCGCTCATTCAACC
GAAGCATTGTCTGTTGTGCTCCCAAAACCCGGCACCCCCGTGCGTGCGTC
GGATTGCGCGATTTCTGCTGCCGGCCGCCAGGTGGTCACGGCGGGACCAG
ATCATGTGGATCTGCCAGTACCTACCTGGGCGCTCTCGGGGCGGCGCTCA
TCAAGGCCAAAGACACTGGCGCCCTCACGAGGGCCTTCGTCACCTGTCTC
GCCGCCTACCACAAACCGCCGGCGCGGGGGGACACGCGCGTTCCGCCTCT
TTCCCATCTCAAGGTGGAGGCCCATGCTGTAATCGAATTTACCAAGAATA
TCGCAGAGGCCACCTATCTGCTCGAAGGCGACGGGCTGGTGTCGCTCTTC
ACATACGACATCATTATGGGCGTCGCCACGGACATTAACCTCTGCTTTCC
CAATATCGAGTACGTTGGCCTATTGCAGGCCATCGCCGAGGTCTCCGGCG
GCGATCCCGTACTGACAGAGTACTTCCAGAGGCTTGCTCGGGCGGTGCTC
ACCCCTGCCAAAGACTACTTCTTCAACAAGGTCATCACTGAGCTCGTGCC
ACAGCTGAAGATCTTCCATGGTGCGGCGCTCGCCAACCCGATGCTCATGC
ATCGCGTCATGCCCACCATCGGTGCTACTCGCGACATTCTCATCTCCATC
ACCAAGCTCGCGTCGTCCAGCCTGCTTGACGCACCGCAGATAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10991:372..1716-

>mRNA_P-wetherbeei_contig10991.1.1 ID=mRNA_P-wetherbeei_contig10991.1.1|Name=mRNA_P-wetherbeei_contig10991.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=888bp|location=Sequence derived from alignment at P-wetherbeei_contig10991:372..1716- (Phaeothamnion wetherbeei SAG_119_79)
CTGACGCAGATCGTCATCAAGAAGCTTGTCGGCGACTGGCGTGTTGACAA
CAAGAACTTCGTCGCTATTGTCCACGACCGTTGCGGCGTCAACATAAAGG
CGATGGAGACGCTGGGCAGCTACTTCGAAGCGGTCGAAATCGGCTGCGAG
AGTCACACGCTCGACTTCTGCTGCCGGAAGATTGTCAGCGCCGAAATTCT
CGACAACTATGTTCAGTTCTTCACGGGGCTGATCTCGCACAGCCACAAGG
CCAAGGAATACATTAAGGCGGAACTCGGAGTTTCTCCTCCCAGTGTCTGC
CCAACCCGCTGTACCTACCTGGGCGCTCTCGGGGCGGCGCTCATCAAGGC
CAAAGACACTGGCGCCCTCACGAGGGCCTTCGTCACCTGTCTCGCCGCCT
ACCACAAACCGCCGGCGCGGGGGGACACGCGCGTTCCGCCTCTTTCCCAT
CTCAAGGTGGAGGCCCATGCTGTAATCGAATTTACCAAGAATATCGCAGA
GGCCACCTATCTGCTCGAAGGCGACGGGCTGGTGTCGCTCTTCACATACG
ACATCATTATGGGCGTCGCCACGGACATTAACCTCTGCTTTCCCAATATC
GAGTACGTTGGCCTATTGCAGGCCATCGCCGAGGTCTCCGGCGGCGATCC
CGTACTGACAGAGTACTTCCAGAGGCTTGCTCGGGCGGTGCTCACCCCTG
CCAAAGACTACTTCTTCAACAAGGTCATCACTGAGCTCGTGCCACAGCTG
AAGATCTTCCATGGTGCGGCGCTCGCCAACCCGATGCTCATGCATCGCGT
CATGCCCACCATCGGTGCTACTCGCGACATTCTCATCTCCATCACCAAGC
TCGCGTCGTCCAGCCTGCTTGACGCACCGCAGATAGAG
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