mRNA_P-wetherbeei_contig1097.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1097.1.1
Unique NamemRNA_P-wetherbeei_contig1097.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1097.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1097contigP-wetherbeei_contig1097:203..1751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1549
Hectar predicted targeting categoryother localisation
Exons1
Cds size804
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185892.0593348-UTR-P-wetherbeei_contig1097:202..5311683185892.0593348-UTR-P-wetherbeei_contig1097:202..531Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1097 203..531 -
1683185892.079297-UTR-P-wetherbeei_contig1097:1335..17511683185892.079297-UTR-P-wetherbeei_contig1097:1335..1751Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1097 1336..1751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185892.0700924-CDS-P-wetherbeei_contig1097:531..13351683185892.0700924-CDS-P-wetherbeei_contig1097:531..1335Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1097 532..1335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1097.1.1prot_P-wetherbeei_contig1097.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1097 532..1335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1097.1.1

>prot_P-wetherbeei_contig1097.1.1 ID=prot_P-wetherbeei_contig1097.1.1|Name=mRNA_P-wetherbeei_contig1097.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=268bp
MFLPLTDENRFPNQDPPLLPAENGLVKAFTGATLPDTAAADGSGFESTST
SVATDAKAASTDAASPVSAPADALDEDEGFDGGFGGYGGRGYMTVADAMA
EFGAGFVTSAGRCFPADSRVLTPSGPRRLGDLKHGDLVTNHAGRPEKVLA
VAHAAANGGNLRGNRHKKGVRAGAAMMITLETAIGAITLHADHPVQDGSG
RMLVSDKKCRGLPPFGGSLSYFLPCFFSAFRFRPAFVLFAVGLQVSCFVL
LSFPLFPPSFRLLSLLL*
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mRNA from alignment at P-wetherbeei_contig1097:203..1751-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1097.1.1 ID=mRNA_P-wetherbeei_contig1097.1.1|Name=mRNA_P-wetherbeei_contig1097.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1549bp|location=Sequence derived from alignment at P-wetherbeei_contig1097:203..1751- (Phaeothamnion wetherbeei SAG_119_79)
GGAAACGGCAGCCAAATTGGAGCCCTCCCCGAGGCCAAAGACGAGCACAG
TCGGAACAGTGGCGGCGCGCCCCCAAGAGGATACGACGGTGAGTCCTTTG
TTGCACCCGTGAAAGAAATAGGATTTCTTCTCGGATTCAGCGAAGGACAG
AAGTCGGCGGTGGGGAAACTCCTTTCTTCTCTCACAATGACGCTAGGAAG
AGTTTCCTAAAAAGAGCCGCATCTCTAACCCCGGGGTTTACTCATCTGAA
CAGCAGCGGTTACGCTGCCGGCGGTTCACGAATGTCACGGCCGACCGCAA
CACTTGAGGCCCGCGGTGCCACCGCGTGCCGGCGAGAAGGAAAGACGAAC
ATGCCAATAAGAGTTTAAACCGGAAAAATCCGTTTCCTGATCTCAGCCGG
CGCCCGATTTTCCTAAATGTTCCTCCCGCTGACCGACGAAAACCGGTTCC
CCAACCAAGACCCACCTCTTTTGCCGGCAGAAAACGGCCTGGTCAAGGCC
TTCACTGGAGCCACGCTGCCCGACACAGCCGCGGCAGATGGAAGCGGTTT
CGAGAGCACGTCCACATCAGTTGCGACGGACGCCAAAGCCGCATCGACGG
ACGCTGCCAGCCCCGTCAGTGCGCCCGCTGACGCGCTCGATGAGGACGAA
GGTTTCGACGGCGGTTTCGGCGGTTATGGCGGCCGCGGTTACATGACCGT
GGCGGACGCCATGGCAGAATTTGGCGCCGGCTTCGTGACATCGGCCGGCC
GCTGCTTCCCGGCTGACAGCCGAGTCCTGACGCCGTCGGGTCCGCGCCGA
CTCGGCGACCTGAAGCACGGCGACTTGGTGACGAACCACGCCGGACGGCC
CGAAAAGGTTCTGGCGGTGGCGCACGCGGCGGCGAACGGCGGCAACCTTC
GGGGAAACCGGCATAAGAAGGGCGTCCGGGCGGGGGCGGCGATGATGATC
ACGCTTGAGACGGCAATCGGCGCCATCACGCTGCACGCAGACCACCCGGT
GCAGGATGGCAGCGGCCGGATGCTGGTGAGTGACAAAAAGTGCAGAGGTC
TTCCTCCTTTTGGTGGATCCCTCTCATACTTTCTTCCTTGCTTCTTTTCT
GCGTTTCGTTTCCGCCCTGCTTTTGTTCTTTTTGCCGTCGGATTACAGGT
CTCTTGCTTTGTACTTCTTTCTTTCCCCCTTTTTCCTCCTTCATTTCGGC
TTCTATCTCTCCTTCTTTAGCATAGCTTGGGCTCTTCCCTTCTGTTTTGG
GGCCTCGGGTTTCTTTGTCTTGGCGAGCCGTTGTTCGTTATCTAATTTCT
CCAGGCTTCCGCCCCCCGCGTTGGCAGCAAAAAGGGGTCTCATAATTATT
TCCGAGCCAAGAGGAAAAGGGATCAGTTGACGACCGGCCCGTTCCGACTC
TCAAACACATGCTCCCCGTGCTCCGACCGCCAGCTGCATTCTGCGGTGCT
TTCTGAGAGACACAGGCTTGGTCGCCCTTTTTTCCATCGTTTCTTTCTGT
TCGCTTCCTCTGCACCTAGGCTAAATACGCAAACAAACCTACCTTTCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1097:203..1751-

>mRNA_P-wetherbeei_contig1097.1.1 ID=mRNA_P-wetherbeei_contig1097.1.1|Name=mRNA_P-wetherbeei_contig1097.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=804bp|location=Sequence derived from alignment at P-wetherbeei_contig1097:203..1751- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCCTCCCGCTGACCGACGAAAACCGGTTCCCCAACCAAGACCCACC
TCTTTTGCCGGCAGAAAACGGCCTGGTCAAGGCCTTCACTGGAGCCACGC
TGCCCGACACAGCCGCGGCAGATGGAAGCGGTTTCGAGAGCACGTCCACA
TCAGTTGCGACGGACGCCAAAGCCGCATCGACGGACGCTGCCAGCCCCGT
CAGTGCGCCCGCTGACGCGCTCGATGAGGACGAAGGTTTCGACGGCGGTT
TCGGCGGTTATGGCGGCCGCGGTTACATGACCGTGGCGGACGCCATGGCA
GAATTTGGCGCCGGCTTCGTGACATCGGCCGGCCGCTGCTTCCCGGCTGA
CAGCCGAGTCCTGACGCCGTCGGGTCCGCGCCGACTCGGCGACCTGAAGC
ACGGCGACTTGGTGACGAACCACGCCGGACGGCCCGAAAAGGTTCTGGCG
GTGGCGCACGCGGCGGCGAACGGCGGCAACCTTCGGGGAAACCGGCATAA
GAAGGGCGTCCGGGCGGGGGCGGCGATGATGATCACGCTTGAGACGGCAA
TCGGCGCCATCACGCTGCACGCAGACCACCCGGTGCAGGATGGCAGCGGC
CGGATGCTGGTGAGTGACAAAAAGTGCAGAGGTCTTCCTCCTTTTGGTGG
ATCCCTCTCATACTTTCTTCCTTGCTTCTTTTCTGCGTTTCGTTTCCGCC
CTGCTTTTGTTCTTTTTGCCGTCGGATTACAGGTCTCTTGCTTTGTACTT
CTTTCTTTCCCCCTTTTTCCTCCTTCATTTCGGCTTCTATCTCTCCTTCT
TTAG
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